Spns1 (sphingolipid transporter 1)

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Gene: Spns1 (sphingolipid transporter 1) Rattus norvegicus

Analyze

Symbol:

Spns1

Name:

sphingolipid transporter 1

RGD ID:

1305613

Description:

Predicted to enable transmembrane transporter activity. Predicted to be involved in lysophospholipid transport. Predicted to act upstream of or within phospholipid efflux and regulation of lysosomal lumen pH. Predicted to be located in mitochondrial inner membrane. Predicted to be active in lysosome and membrane. Orthologous to human SPNS1 (SPNS lysolipid transporter 1, lysophospholipid); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; buspirone.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC361648; MGC125152; protein spinster homolog 1; RGD1305613; similar to spinster-like protein; spinster homolog 1; spinster homolog 1 (Drosophila); SPNS sphingolipid transporter 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPNS1 (SPNS lysolipid transporter 1, lysophospholipid)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Spns1 (SPNS lysolipid transporter 1, lysophospholipid)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Spns1 (SPNS lysolipid transporter 1, lysophospholipid)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPNS1 (SPNS lysolipid transporter 1, lysophospholipid)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPNS1 (SPNS lysolipid transporter 1, lysophospholipid)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Spns1 (SPNS lysolipid transporter 1, lysophospholipid)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SPNS1 (SPNS lysolipid transporter 1, lysophospholipid)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SPNS1 (SPNS lysolipid transporter 1, lysophospholipid)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Spns1 (SPNS lysolipid transporter 1, lysophospholipid)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Spns1 (SPNS lysolipid transporter 1, lysophospholipid)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SPNS1 (SPNS lysolipid transporter 1, lysophospholipid)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	spns1 (spinster homolog 1 (Drosophila))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	spin-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	spin-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	spin-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	spin-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	spin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	180,942,088 - 180,949,415 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	180,942,088 - 180,949,370 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	189,273,138 - 189,280,410 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	196,459,182 - 196,466,454 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	189,146,605 - 189,153,897 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	197,771,196 - 197,778,506 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	197,771,108 - 197,778,490 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	204,753,272 - 204,760,575 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	185,455,707 - 185,462,986 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	185,605,587 - 185,612,868 (-)	NCBI
Celera	1	178,603,008 - 178,610,289 (-)	NCBI		Celera
Cytogenetic Map	1	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

16p11.2 Deletion Syndrome (ISO)

Brody myopathy (ISO)

chromosome 16p11.2 deletion syndrome (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buspirone (EXP)

cadmium dichloride (EXP)

carbamazepine (ISO)

chlormequat chloride (EXP)

clofibrate (ISO)

copper atom (EXP)

copper(0) (EXP)

coumarin (ISO)

dexamethasone (ISO)

endosulfan (EXP)

fenthion (ISO)

flutamide (EXP)

formaldehyde (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

methidathion (ISO)

methyl methanesulfonate (ISO)

paracetamol (ISO)

quercetin (ISO)

rotenone (EXP)

sodium arsenate (ISO)

sunitinib (ISO)

temozolomide (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lysophospholipid transport (ISO)

phospholipid efflux (ISO)

regulation of lysosomal lumen pH (ISO)

signal transduction (IEA)

transmembrane transport (IEA)

Cellular Component

lysosome (ISO)

membrane (IBA,IEA)

mitochondrial inner membrane (IEA)

Molecular Function

protein binding (ISO)

transmembrane transporter activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17897319

Genomics

Comparative Map Data

Spns1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	180,942,088 - 180,949,415 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	180,942,088 - 180,949,370 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	189,273,138 - 189,280,410 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	196,459,182 - 196,466,454 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	189,146,605 - 189,153,897 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	197,771,196 - 197,778,506 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	197,771,108 - 197,778,490 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	204,753,272 - 204,760,575 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	185,455,707 - 185,462,986 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	185,605,587 - 185,612,868 (-)	NCBI
Celera	1	178,603,008 - 178,610,289 (-)	NCBI		Celera
Cytogenetic Map	1	q36	NCBI

SPNS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	28,974,778 - 28,984,765 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	16	28,974,221 - 28,984,548 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	28,986,099 - 28,995,864 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	28,893,650 - 28,903,365 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	27,941,112 - 27,950,884 (+)	NCBI		Celera
Cytogenetic Map	16	p11.2	NCBI
HuRef	16	26,853,970 - 26,863,742 (+)	NCBI		HuRef
CHM1_1	16	29,997,848 - 30,007,620 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	29,255,893 - 29,265,658 (+)	NCBI		T2T-CHM13v2.0

Spns1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	125,969,232 - 125,977,179 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	125,969,232 - 125,976,622 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	126,370,060 - 126,377,934 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	126,370,060 - 126,377,450 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	133,513,576 - 133,521,448 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	126,161,215 - 126,168,559 (-)	NCBI		MGSCv36	mm8
Celera	7	126,222,257 - 126,230,148 (-)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI

Spns1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955493	6,505,230 - 6,514,307 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955493	6,506,449 - 6,514,308 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPNS1
(Pan paniscus - bonobo/pygmy chimpanzee)

No map positions available.

SPNS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	18,450,019 - 18,458,456 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	18,412,219 - 18,459,438 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	20,026,942 - 20,035,385 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	18,584,718 - 18,593,162 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	18,547,797 - 18,593,173 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	18,384,202 - 18,392,645 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	18,298,985 - 18,307,428 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	18,615,403 - 18,623,857 (+)	NCBI		UU_Cfam_GSD_1.0

Spns1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	123,667,377 - 123,674,543 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	11,764,295 - 11,772,409 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936501	11,765,236 - 11,772,403 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPNS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	18,629,646 - 18,639,214 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	18,629,646 - 18,638,442 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	18,815,481 - 18,825,013 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPNS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	26,085,461 - 26,095,585 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	26,085,918 - 26,095,309 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	3,532,325 - 3,542,380 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spns1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	12,799,038 - 12,807,121 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624782	12,799,850 - 12,807,159 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Spns1
31 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	46
Interacting mature miRNAs:	47
Transcripts:	ENSRNOT00000024185
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642722	214537671	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	100357752	183970443	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	115540693	185145286	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350408	181759564	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	123350408	182418476	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	123350408	182418476	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	123350408	182418476	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
71118	Thym1	Thymus enlargement QTL 1	10.17	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
724550	Thym3	Thymus enlargement QTL 3	7.82	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	136830018	181830018	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	143506580	212458660	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	144017057	197814409	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	144267353	196383635	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	144267353	222987745	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	149448574	221264292	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	201278233	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	201278233	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	151162512	201278233	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	151162512	201278233	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	151162766	225824951	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	151646613	196646613	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	154561505	199561505	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	155866514	200866514	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	156677124	201278233	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	156677124	218753816	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	158633083	203633083	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	213533942	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	243914901	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164747424	209747424	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	164747424	209747424	Rat
737974	Bp161	Blood pressure QTL 161		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	164747558	181133855	Rat
2312558	Glom17	Glomerulus QTL 17	3.9	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	166532971	191278129	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	167909849	212909849	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169112897	197261052	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	169112897	197261052	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169537671	214537671	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	169537671	214537671	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	171310381	216310381	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	171629477	216629477	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	171629477	216629477	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	171629477	216629477	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	171629477	216629477	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	171629477	216629477	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	171629477	216629477	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	172609619	217609619	Rat
61326	Eae6	Experimental allergic encephalomyelitis QTL 6	5.3		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	172949660	181830018	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	173108781	218108781	Rat
631670	Iddm10	Insulin dependent diabetes mellitus QTL 10	1.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	174133260	196383635	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	174133260	219133260	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	176550523	221550523	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	176869060	221869060	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
1558658	Bw59	Body weight QTL 59	3.5	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	1	178784622	223784622	Rat
2325725	Eae31	Experimental allergic encephalomyelitis QTL 31			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	178810256	188377506	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	178810256	240830002	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
1302787	Stl25	Serum triglyceride level QTL 25	2.7	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	180359209	210702199	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	180359209	218108781	Rat

Markers in Region

RH134613

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	180,942,205 - 180,942,416 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	197,771,314 - 197,771,524	NCBI	Rnor6.0
Rnor_5.0	1	204,753,390 - 204,753,600	UniSTS	Rnor5.0
RGSC_v3.4	1	185,455,825 - 185,456,035	UniSTS	RGSC3.4
Celera	1	178,603,126 - 178,603,336	UniSTS
Cytogenetic Map	1	q36	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	35	57	41	16	41	6	9	74	35	37	11	6
Low		8			3		2	2			4		2
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001039208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC110048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU671623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA339235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK604160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000024185 ⟹ ENSRNOP00000024185

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	180,942,088 - 180,949,358 (-)	Ensembl
Rnor_6.0 Ensembl	1	197,771,108 - 197,778,490 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097605 ⟹ ENSRNOP00000081664

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	180,942,091 - 180,949,358 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102967 ⟹ ENSRNOP00000081861

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	180,942,393 - 180,949,370 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105544 ⟹ ENSRNOP00000087997

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	180,942,091 - 180,949,370 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112824 ⟹ ENSRNOP00000080759

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	180,942,088 - 180,949,358 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119722 ⟹ ENSRNOP00000089943

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	180,942,088 - 180,949,358 (-)	Ensembl

RefSeq Acc Id:

NM_001039208 ⟹ NP_001034297

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	180,942,088 - 180,949,367 (-)	NCBI
Rnor_6.0	1	197,771,196 - 197,778,475 (-)	NCBI
Rnor_5.0	1	204,753,272 - 204,760,575 (-)	NCBI
RGSC_v3.4	1	185,455,707 - 185,462,986 (-)	RGD
Celera	1	178,603,008 - 178,610,289 (-)	RGD

Sequence:

show sequence

ACATGACCTGCTCTTGGGCAACATGGCGGCAGTTGTAGTGCTGCTTTTGGACTGAGCAACAGCG
AGTGTGGCGCACTCATTCCCGGGGTGAGGAGTGCGTCAGCGTGAGAAGAGGGGCTGGGTCGTGG
TCTTCCTGCTCCTGTCCCAGCATCACCTGCATCTCACGTGTCCTCTCCTCTGTCGGAACCAGAG
GGAATGACGAAACCCAGGGCTTTTCGCAGTGGTGCACTGTGCATCGGAGCACGCTCCTAGGCGA
CGGTGGGCAAGTCTCCTCGAAGTCCTTTCTCCAACCTCCTTCCGTCGGAGGTGGGGCCGAGGCG
TGGGCGGTTGCGATTCCCCAGGGACCATGGCCGGATCCGACACGGCGCCGTTCCTCAGCCAAGC
AGATGACCCAGATGACGGGCCAGCGCCTGGGCATCCGGGGTTGCCAGGGCCCATGGGGAATCCC
AAGTCCGGGGAGCTCGAGGTCCCAGACTGTGAGGGGCTACAGCGCATCACTGGTTTATCTCGGG
GCCATTCGACCCTCATAGTGGTGGTGCTGTGCTACATCAACCTCCTGAACTACATGGATCGCTT
CACCGTGGCTGGGGTTCTTACAGACATCGAGCAGTTCTTTAACATCGGAGATGGTAGTACTGGC
CTCATCCAGACTGTGTTCATTTCCAGTTACATGGTGTTGGCACCAGTGTTTGGCTACCTGGGTG
ACAGGTACAATCGAAAGTACCTCATGTGCGGGGGCATTGCCTTCTGGTCCCTGGTGACACTGGG
GTCATCCTTCATCCCCAGAGAGCATTTCTGGCTGCTCCTCCTGACCCGGGGCCTGGTGGGGGTC
GGGGAGGCCAGTTACTCCACCATTGCGCCCACCCTGATCGCCGACCTCTTCGTGGCAGACCAGC
GGAGTCGGATGCTCAGCATCTTCTATTTTGCCATCCCTGTGGGCAGCGGTCTAGGTTACATTGC
TGGCTCCAAAGTGAAGGATTTGGCTGGAGACTGGCACTGGGCTTTACGGGTGACACCAGGTCTA
GGCGTGCTGGCCGTCCTGCTGCTGTTCCTGGTGGTACAAGAGCCCCCGAGAGGAGCTGTGGAAC
GCCACTCAGGTTCACCACCCCTGAGCCCCACCTCTTGGTGGGCAGATCTGAAGGCACTGGCACG
AAATCCTAGTTTCGTCCTGTCTTCCCTTGGCTTCACCGCTGTGGCCTTTGTCACGGGCTCCCTG
GCTCTCTGGGCCCCAGCATTCCTGCTGCGCTCCCGTGTTGTTCTGGGAGAGACTCCTCCCTGTC
TCCCTGGAGACTCATGCTCTTCCTCTGACAGTCTCATCTTTGGACTCATCACTTGCCTGACTGG
AGTCCTGGGTGTGGGCCTGGGTGTGGAAATCAGCCGCCGCCTTCGCCGCTTCAACCCTCGGGCT
GACCCACTGGTGTGTGCAGCCGGCCTCCTGGGTTCCTCGCCTTTCCTCTTCCTGTCCCTGGCCT
GTGCCCGAGGTAGCATCGTGGCCACCTATATTTTTATCTTTATTGGGGAGACCCTGTTGTCCAT
GAACTGGGCCATTGTGGCTGACATCCTGTTGTATGTGGTGATCCCAACTCGACGGTCCACAGCT
GAGGCCTTCCAGATAGTGCTGTCCCACTTGCTAGGTGATGCGGGGAGCCCTTACCTCATTGGTC
TAATCTCTGACCGCCTCCGAAGGAGCTGGCCCCCTTCCTTCCTGTCCGAGTTCCGGGCTCTGCA
GTTCTCTCTCATGCTCTGTGCTTTCGTCGGGGCCCTGGGTGGCGCGGCCTTCCTGGGCACCGCC
ATGTTCATTGAGAATGACCGCCGGCGGGCACAACTCCACGTGCAGGGTCTGTTGCATGAGACCG
AGCCCTCAGATGACCAGATTGTGGTACCTCAGCGAGGCCGTTCTACCCGAGTCCCTGTGTCCAG
TGTGCTCATCTGAGGAGCCGTTGCTCGAGCCCAGCCATAGATGTCACAGCTGGTCCTGGGCCCA
CCCCAAACGGTTCCCAGGCAGAAGCCCTCACCAGGCCCAGGTCCAAGAAGGAAGCCCTGGGATA
GATCCCAGCTCCCAGACACTACATGGGCAGCCCAGGGAAGAGATGGGTGTCCAGAAATGGGGGT
TGTCCTCTCTACTAGGGTAGCCCAAGGGGTTTGGTGCTATTTGTAACGGATGTAAATAAAATTT
GTAATCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017589399 ⟹ XP_017444888

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	180,942,088 - 180,949,415 (-)	NCBI
Rnor_6.0	1	197,771,196 - 197,778,504 (-)	NCBI

Sequence:

show sequence

GTGACTTTCTCCAGTAGGGCTCCGGTGTCACATGACCTGCTCTTGGGCAACATGGCGGCAGTTG
TAGTGCTGCTTTTGGACTGAGCAACAGCGAGTGTGGCGCACTCATTCCCGGGAGGGAATGACGA
AACCCAGGGCTTTTCGCAGTGGTGCACTGTGCATCGGAGCACGCTCCTAGGCGACGGTGGGCAA
GTCTCCTCGAAGTCCTTTCTCCAACCTCCTTCCGTCGGAGGTGGGGCCGAGGCGTGGGCGGTTG
CGATTCCCCAGGGACCATGGCCGGATCCGACACGGCGCCGTTCCTCAGCCAAGCAGATGACCCA
GATGACGGGCCAGCGCCTGGGCATCCGGGGTTGCCAGGGCCCATGGGGAATCCCAAGTCCGGGG
AGCTCGAGGTCCCAGACTGTGAGGGGCTACAGCGCATCACTGGTTTATCTCGGGGCCATTCGAC
CCTCATAGTGGTGGTGCTGTGCTACATCAACCTCCTGAACTACATGGATCGCTTCACCGTGGCT
GGGGTTCTTACAGACATCGAGCAGTTCTTTAACATCGGAGATGGTAGTACTGGCCTCATCCAGA
CTGTGTTCATTTCCAGTTACATGGTGTTGGCACCAGTGTTTGGCTACCTGGGTGACAGGTACAA
TCGAAAGTACCTCATGTGCGGGGGCATTGCCTTCTGGTCCCTGGTGACACTGGGGTCATCCTTC
ATCCCCAGAGAGCATTTCTGGCTGCTCCTCCTGACCCGGGGCCTGGTGGGGGTCGGGGAGGCCA
GTTACTCCACCATTGCGCCCACCCTGATCGCCGACCTCTTCGTGGCAGACCAGCGGAGTCGGAT
GCTCAGCATCTTCTATTTTGCCATCCCTGTGGGCAGCGGTCTAGGTTACATTGCTGGCTCCAAA
GTGAAGGATTTGGCTGGAGACTGGCACTGGGCTTTACGGGTGACACCAGGTCTAGGCGTGCTGG
CCGTCCTGCTGCTGTTCCTGGTGGTACAAGAGCCCCCGAGAGGAGCTGTGGAACGCCACTCAGG
TTCACCACCCCTGAGCCCCACCTCTTGGTGGGCAGATCTGAAGGCACTGGCACGAAATCCTAGT
TTCGTCCTGTCTTCCCTTGGCTTCACCGCTGTGGCCTTTGTCACGGGCTCCCTGGCTCTCTGGG
CCCCAGCATTCCTGCTGCGCTCCCGTGTTGTTCTGGGAGAGACTCCTCCCTGTCTCCCTGGAGA
CTCATGCTCTTCCTCTGACAGTCTCATCTTTGGACTCATCACTTGCCTGACTGGAGTCCTGGGT
GTGGGCCTGGGTGTGGAAATCAGCCGCCGCCTTCGCCGCTTCAACCCTCGGGCTGACCCACTGG
TGTGTGCAGCCGGCCTCCTGGGTTCCTCGCCTTTCCTCTTCCTGTCCCTGGCCTGTGCCCGAGG
TAGCATCGTGGCCACCTATATTTTTATCTTTATTGGGGAGACCCTGTTGTCCATGAACTGGGCC
ATTGTGGCTGACATCCTGTTGTATGTGGTGATCCCAACTCGACGGTCCACAGCTGAGGCCTTCC
AGATAGTGCTGTCCCACTTGCTAGGTGATGCGGGGAGCCCTTACCTCATTGGTCTAATCTCTGA
CCGCCTCCGAAGGAGCTGGCCCCCTTCCTTCCTGTCCGAGTTCCGGGCTCTGCAGTTCTCTCTC
ATGCTCTGTGCTTTCGTCGGGGCCCTGGGTGGCGCGGCCTTCCTGGGCACCGCCATGTTCATTG
AGAATGACCGCCGGCGGGCACAACTCCACGTGCAGGGTCTGTTGCATGAGACCGAGCCCTCAGA
TGACCAGATTGTGGTACCTCAGCGAGGCCGTTCTACCCGAGTCCCTGTGTCCAGTGTGCTCATC
TGAGGAGCCGTTGCTCGAGCCCAGCCATAGATGTCACAGCTGGTCCTGGGCCCACCCCAAACGG
TTCCCAGGCAGAAGCCCTCACCAGGCCCAGGTCCAAGAAGGAAGCCCTGGGATAGATCCCAGCT
CCCAGACACTACATGGGCAGCCCAGGGAAGAGATGGGTGTCCAGAAATGGGGGTTGTCCTCTCT
ACTAGGGTAGCCCAAGGGGTTTGGTGCTATTTGTAACGGATGTAAATAAAATTTGTAATCAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001034297	(Get FASTA)	NCBI Sequence Viewer
	XP_017444888	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI10049	(Get FASTA)	NCBI Sequence Viewer
	EDM17486	(Get FASTA)	NCBI Sequence Viewer
	Q2YDU8	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001034297 ⟸ NM_001039208

- UniProtKB:

Q2YDU8 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAGSDTAPFLSQADDPDDGPAPGHPGLPGPMGNPKSGELEVPDCEGLQRITGLSRGHSTLIVVV
LCYINLLNYMDRFTVAGVLTDIEQFFNIGDGSTGLIQTVFISSYMVLAPVFGYLGDRYNRKYLM
CGGIAFWSLVTLGSSFIPREHFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRMLSIFY
FAIPVGSGLGYIAGSKVKDLAGDWHWALRVTPGLGVLAVLLLFLVVQEPPRGAVERHSGSPPLS
PTSWWADLKALARNPSFVLSSLGFTAVAFVTGSLALWAPAFLLRSRVVLGETPPCLPGDSCSSS
DSLIFGLITCLTGVLGVGLGVEISRRLRRFNPRADPLVCAAGLLGSSPFLFLSLACARGSIVAT
YIFIFIGETLLSMNWAIVADILLYVVIPTRRSTAEAFQIVLSHLLGDAGSPYLIGLISDRLRRS
WPPSFLSEFRALQFSLMLCAFVGALGGAAFLGTAMFIENDRRRAQLHVQGLLHETEPSDDQIVV
PQRGRSTRVPVSSVLI

hide sequence

RefSeq Acc Id:	XP_017444888 ⟸ XM_017589399
- Peptide Label:	isoform X1
- UniProtKB:	Q2YDU8 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAGSDTAPFLSQADDPDDGPAPGHPGLPGPMGNPKSGELEVPDCEGLQRITGLSRGHSTLIVVV LCYINLLNYMDRFTVAGVLTDIEQFFNIGDGSTGLIQTVFISSYMVLAPVFGYLGDRYNRKYLM CGGIAFWSLVTLGSSFIPREHFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRMLSIFY FAIPVGSGLGYIAGSKVKDLAGDWHWALRVTPGLGVLAVLLLFLVVQEPPRGAVERHSGSPPLS PTSWWADLKALARNPSFVLSSLGFTAVAFVTGSLALWAPAFLLRSRVVLGETPPCLPGDSCSSS DSLIFGLITCLTGVLGVGLGVEISRRLRRFNPRADPLVCAAGLLGSSPFLFLSLACARGSIVAT YIFIFIGETLLSMNWAIVADILLYVVIPTRRSTAEAFQIVLSHLLGDAGSPYLIGLISDRLRRS WPPSFLSEFRALQFSLMLCAFVGALGGAAFLGTAMFIENDRRRAQLHVQGLLHETEPSDDQIVV PQRGRSTRVPVSSVLI hide sequence

RefSeq Acc Id:

ENSRNOP00000024185 ⟸ ENSRNOT00000024185

RefSeq Acc Id:

ENSRNOP00000081861 ⟸ ENSRNOT00000102967

RefSeq Acc Id:

ENSRNOP00000089943 ⟸ ENSRNOT00000119722

RefSeq Acc Id:

ENSRNOP00000087997 ⟸ ENSRNOT00000105544

RefSeq Acc Id:

ENSRNOP00000080759 ⟸ ENSRNOT00000112824

RefSeq Acc Id:

ENSRNOP00000081664 ⟸ ENSRNOT00000097605

Protein Domains

MFS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2YDU8-F1-model_v2	AlphaFold	Q2YDU8	1-528	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690397

Promoter ID:

EPDNEW_R920

Type:

multiple initiation site

Name:

Spns1_1

Description:

sphingolipid transporter 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	197,778,466 - 197,778,526	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305613	AgrOrtholog
BioCyc Gene	G2FUF-57455	BioCyc
Ensembl Genes	ENSRNOG00000017621	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000024185	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOP00000080759.1	UniProtKB/TrEMBL
	ENSRNOP00000081664.1	UniProtKB/TrEMBL
	ENSRNOP00000081861	ENTREZGENE
	ENSRNOP00000081861.1	UniProtKB/TrEMBL
	ENSRNOP00000087997.1	UniProtKB/TrEMBL
	ENSRNOP00000089943.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024185	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOT00000097605.1	UniProtKB/TrEMBL
	ENSRNOT00000102967	ENTREZGENE
	ENSRNOT00000102967.1	UniProtKB/TrEMBL
	ENSRNOT00000105544.1	UniProtKB/TrEMBL
	ENSRNOT00000112824.1	UniProtKB/TrEMBL
	ENSRNOT00000119722.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1250.20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7315879	IMAGE-MGC_LOAD
InterPro	MFS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MFS_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MFS_spinster-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MFS_trans_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:361648	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:125152	IMAGE-MGC_LOAD
NCBI Gene	361648	ENTREZGENE
PANTHER	PTHR23505	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	MFS_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Spns1	PhenoGen
PROSITE	MFS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF103473	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZQL7_RAT	UniProtKB/TrEMBL
	A0A8I5ZSY7_RAT	UniProtKB/TrEMBL
	A0A8I5ZT04_RAT	UniProtKB/TrEMBL
	A0A8I6A590_RAT	UniProtKB/TrEMBL
	A0A8I6ADI2_RAT	UniProtKB/TrEMBL
	Q2YDU8	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-05-12	Spns1	sphingolipid transporter 1	Spns1	SPNS sphingolipid transporter 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-05-11	Spns1	SPNS sphingolipid transporter 1	Spns1	spinster homolog 1 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-06-18	Spns1	spinster homolog 1 (Drosophila)	RGD1305613	similar to spinster-like protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1305613	similar to spinster-like protein	RGD1305613_predicted	similar to spinster-like protein (predicted)	Symbol and Name status set to approved	1299863	APPROVED
2005-01-20	RGD1305613_predicted	similar to spinster-like protein (predicted)	LOC361648_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361648_predicted	similar to spinster-like protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar