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Gene: Rnf40 (ring finger protein 40) Rattus norvegicus
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Symbol: Rnf40
Name: ring finger protein 40
Description: Exhibits syntaxin-1 binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-protein transferase activity. Involved in positive regulation of cellular protein metabolic process; response to peptide hormone; and ubiquitin-dependent protein catabolic process. Localizes to several cellular components, including axon terminus; cytosol; and extrinsic component of membrane. Biomarker of nephrogenic diabetes insipidus. Orthologous to human RNF40 (ring finger protein 40); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: BRE1-B; E3 ubiquitin-protein ligase BRE1B; protein staring; ring finger protein 40, E3 ubiquitin protein ligase; RING-type E3 ubiquitin transferase BRE1B; staring protein; syntaxin-1-interacting RING finger protein
Orthologs:
Homo sapiens (human) : RNF40 (ring finger protein 40)  HGNC  Alliance
Mus musculus (house mouse) : Rnf40 (ring finger protein 40)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Rnf40 (ring finger protein 40)
Pan paniscus (bonobo/pygmy chimpanzee) : RNF40 (ring finger protein 40)
Canis lupus familiaris (dog) : RNF40 (ring finger protein 40)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Rnf40 (ring finger protein 40)
Sus scrofa (pig) : RNF40 (ring finger protein 40)
Chlorocebus sabaeus (African green monkey) : RNF40 (ring finger protein 40)
Heterocephalus glaber (naked mole-rat) : Rnf40 (ring finger protein 40)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01199,037,472 - 199,052,823 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,037,544 - 199,052,172 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,060,115 - 206,075,465 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41186,876,103 - 186,890,731 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11187,025,983 - 187,040,612 (+)NCBI
Celera1179,854,408 - 179,869,050 (+)NCBICelera
Cytogenetic Map1q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Rnf40
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 628638
Created: 2003-02-27
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.