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Gene: Setd1a (SET domain containing 1A, histone lysine methyltransferase) Rattus norvegicus
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Symbol: Setd1a
Name: SET domain containing 1A, histone lysine methyltransferase
Description: Predicted to have several functions, including beta-catenin binding activity; euchromatin binding activity; and histone methyltransferase activity (H3-K4 specific). Predicted to be involved in several processes, including histone H3-K4 methylation; positive regulation of cell population proliferation; and regulation of hemopoiesis. Predicted to localize to Set1C/COMPASS complex; nuclear euchromatin; and nuclear speck. Orthologous to human SETD1A (SET domain containing 1A, histone lysine methyltransferase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 2,3,7,8-Tetrachlorodibenzofuran (ortholog); 3,4-methylenedioxymethamphetamine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC309001; RGD1311624; SET domain containing 1A; SET domain containing 1B; Setd1b; similar to KIAA0339 protein
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01199,222,584 - 199,247,993 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,225,100 - 199,247,988 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,244,879 - 206,270,421 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,059,427 - 187,085,331 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1180,039,709 - 180,062,738 (+)NCBICelera
Cytogenetic Map1q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Setd1a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311624
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.