Ms4a20 (membrane-spanning 4-domains, subfamily A, member 20) - Rat Genome Database

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Gene: Ms4a20 (membrane-spanning 4-domains, subfamily A, member 20) Rattus norvegicus
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Symbol: Ms4a20
Name: membrane-spanning 4-domains, subfamily A, member 20
RGD ID: 7639871
Description: INTERACTS WITH epoxiconazole (ortholog); titanium dioxide (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102557108; uncharacterized LOC102557108; uncharacterized protein LOC102557108; uncharacterized protein Ms4a20
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,176,490 - 217,223,881 (-)NCBIGRCr8
mRatBN7.21207,751,598 - 207,798,970 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,751,602 - 207,798,972 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01227,157,087 - 227,321,873 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1205,236,212 - 205,277,035 (-)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ms4a20Ratepoxiconazole increases expressionISOMs4a20 (Mus musculus)6480464epoxiconazole results in increased expression of MS4A20 mRNACTDPMID:35436446
Ms4a20Rattitanium dioxide decreases expressionISOMs4a20 (Mus musculus)6480464titanium dioxide results in decreased expression of MS4A20 mRNACTDPMID:35295148



Ms4a20
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,176,490 - 217,223,881 (-)NCBIGRCr8
mRatBN7.21207,751,598 - 207,798,970 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,751,602 - 207,798,972 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01227,157,087 - 227,321,873 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1205,236,212 - 205,277,035 (-)NCBICelera
Cytogenetic Map1q43NCBI
Ms4a20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391911,074,178 - 11,108,253 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1911,074,178 - 11,108,240 (-)EnsemblGRCm39 Ensembl
GRCm381911,096,814 - 11,130,889 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1911,096,816 - 11,130,876 (-)EnsemblGRCm38mm10GRCm38
MGSCv371911,171,306 - 11,205,368 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361910,776,947 - 10,810,999 (-)NCBIMGSCv36mm8
Celera1911,788,580 - 11,822,252 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map197.68NCBI

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Variants in Ms4a20
566 total Variants

1 to 10 of 89 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat

1 to 10 of 89 rows





1 to 16 of 16 rows
RefSeq Transcripts NM_001432886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001432891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039101338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063280076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

Ensembl Acc Id: ENSRNOT00000115925   ⟹   ENSRNOP00000090389
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1207,751,602 - 207,798,972 (-)Ensembl
RefSeq Acc Id: XM_017590305   ⟹   XP_017445794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,176,490 - 217,223,869 (-)NCBI
mRatBN7.21207,751,598 - 207,798,969 (-)NCBI
Rnor_6.01227,157,087 - 227,321,873 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590306   ⟹   XP_017445795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,176,490 - 217,223,865 (-)NCBI
mRatBN7.21207,751,598 - 207,798,970 (-)NCBI
Rnor_6.01227,157,087 - 227,321,873 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039101337   ⟹   XP_038957265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,176,490 - 217,223,881 (-)NCBI
mRatBN7.21207,751,598 - 207,798,966 (-)NCBI
RefSeq Acc Id: XM_039101338   ⟹   XP_038957266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,176,490 - 217,223,881 (-)NCBI
mRatBN7.21207,751,598 - 207,798,969 (-)NCBI
RefSeq Acc Id: XM_063280070   ⟹   XP_063136140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,176,490 - 217,223,859 (-)NCBI
RefSeq Acc Id: XM_063280076   ⟹   XP_063136146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,176,490 - 217,223,869 (-)NCBI
RefSeq Acc Id: XP_017445795   ⟸   XM_017590306
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017445794   ⟸   XM_017590305
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_038957266   ⟸   XM_039101338
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038957265   ⟸   XM_039101337
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000090389   ⟸   ENSRNOT00000115925


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 10 of 10 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-56390 BioCyc
Ensembl Genes ENSRNOG00000067110 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000115925 ENTREZGENE
  ENSRNOT00000115925.1 UniProtKB/TrEMBL
KEGG Report rno:102557108 UniProtKB/TrEMBL
NCBI Gene LOC102557108 ENTREZGENE
PhenoGen Ms4a20 PhenoGen
RatGTEx ENSRNOG00000067110 RatGTEx
UniProt A0A8I6A9Z0 ENTREZGENE, UniProtKB/TrEMBL
  A6I081 ENTREZGENE, UniProtKB/TrEMBL
1 to 10 of 10 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-18 Ms4a20  membrane-spanning 4-domains, subfamily A, member 20  LOC102557108  uncharacterized LOC102557108  Name and Symbol changed 629549 APPROVED
2013-12-18 LOC102557108  uncharacterized LOC102557108      Symbol and Name status set to provisional 70820 PROVISIONAL