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Gene: Cdca5 (cell division cycle associated 5) Rattus norvegicus

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Symbol:

Cdca5

Name:

cell division cycle associated 5

RGD ID:

1560863

Description:

Predicted to be involved in chromosome organization; double-strand break repair; and positive regulation of exit from mitosis. Predicted to be located in chromatin; cytoplasm; and nucleoplasm. Predicted to be active in nucleus. Orthologous to human CDCA5 (cell division cycle associated 5); INTERACTS WITH acetamide; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC684771; LOC499310; LOC684771; RGD1560863; similar to cell division cycle associated 5; sororin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	212,807,863 - 212,821,313 (+)	NCBI		GRCr8
mRatBN7.2	1	203,378,550 - 203,392,027 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	203,378,577 - 203,392,023 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	211,731,627 - 211,745,181 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	218,823,942 - 218,837,392 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	211,515,011 - 211,528,461 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	221,448,661 - 221,462,235 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	221,448,661 - 221,462,233 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	228,384,097 - 228,394,997 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	210,247,351 - 210,247,881 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	200,912,264 - 200,925,714 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISO)

COVID-19 (ISO)

glycogen storage disease V (ISO)

hepatocellular carcinoma (ISO)

intellectual disability (ISO)

leukocyte adhesion deficiency 3 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-palmitoylglycerol (ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

5-fluorouracil (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antimycin A (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

beta-naphthoflavone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

caffeine (ISO)

calcitriol (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

coumarin (ISO)

coumestrol (ISO)

cycloheximide (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

diazinon (EXP)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

diclofenac (ISO)

dioxygen (ISO)

doxorubicin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

folic acid (ISO)

FR900359 (ISO)

genistein (ISO)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

leflunomide (ISO)

menadione (ISO)

methyl methanesulfonate (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

nickel dichloride (EXP)

niclosamide (ISO)

ozone (ISO)

palbociclib (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

phytoestrogen (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

propanal (ISO)

quercetin (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

T-2 toxin (EXP)

tacrolimus hydrate (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (ISO)

trimellitic anhydride (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

double-strand break repair (IBA,ISO)

mitotic cell cycle (ISO)

mitotic chromosome condensation (ISO)

mitotic metaphase chromosome alignment (IBA,ISO)

mitotic sister chromatid cohesion (IBA,ISO)

positive regulation of exit from mitosis (IBA,ISO)

Cellular Component

chromatin (ISO)

cytoplasm (ISO)

nucleoplasm (ISO)

nucleus (IBA,ISO)

Molecular Function

protein binding (ISO)

protein-containing complex binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15837422	PMID:17349791	PMID:21111234	PMID:22833568	PMID:23548868	PMID:23920377

Genomics

Comparative Map Data

Cdca5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	212,807,863 - 212,821,313 (+)	NCBI		GRCr8
mRatBN7.2	1	203,378,550 - 203,392,027 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	203,378,577 - 203,392,023 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	211,731,627 - 211,745,181 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	218,823,942 - 218,837,392 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	211,515,011 - 211,528,461 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	221,448,661 - 221,462,235 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	221,448,661 - 221,462,233 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	228,384,097 - 228,394,997 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	210,247,351 - 210,247,881 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	200,912,264 - 200,925,714 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

CDCA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	65,061,093 - 65,084,040 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	65,066,300 - 65,084,164 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	64,844,925 - 64,851,512 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	64,601,503 - 64,608,100 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	64,601,502 - 64,608,100	NCBI
Celera	11	62,171,226 - 62,177,913 (-)	NCBI		Celera
Cytogenetic Map	11	q13.1	NCBI
HuRef	11	61,171,560 - 61,178,247 (-)	NCBI		HuRef
CHM1_1	11	64,728,627 - 64,735,313 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	65,054,375 - 65,077,318 (-)	NCBI		T2T-CHM13v2.0

Cdca5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	6,135,127 - 6,141,803 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	6,135,013 - 6,141,807 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	6,085,097 - 6,091,773 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	6,084,983 - 6,091,777 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	6,085,097 - 6,091,773 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	6,085,097 - 6,091,773 (+)	NCBI		MGSCv36	mm8
Celera	19	5,957,560 - 5,964,236 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.34	NCBI

Cdca5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955422	20,114,565 - 20,129,679 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDCA5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	52,115,081 - 52,129,223 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	52,115,203 - 52,120,817 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	50,723,160 - 50,736,970 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	53,156,720 - 53,170,506 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	18	52,251,940 - 52,258,937 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	51,825,978 - 51,839,752 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	52,620,789 - 52,634,766 (+)	NCBI		UU_Cfam_GSD_1.0

Cdca5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	7,842,550 - 7,856,508 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	4,284,958 - 4,291,874 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	4,285,007 - 4,291,875 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDCA5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	7,103,673 - 7,113,202 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	7,103,648 - 7,112,772 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	6,235,704 - 6,251,945 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDCA5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	9,151,503 - 9,157,412 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	9,151,712 - 9,157,456 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	106,533,173 - 106,538,620 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdca5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624767	21,321,286 - 21,327,780 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	181
Count of miRNA genes:	152
Interacting mature miRNAs:	162
Transcripts:	ENSRNOT00000072493
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1357335	Bw39	Body weight QTL 39	3.3		body mass (VT:0001259)	body weight (CMO:0000012)	1	207243873	252243873	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	186658830	266453731	Rat
2293674	Bss39	Bone structure and strength QTL 39	7.1	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	1	210980612	255980612	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	177339686	222339686	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	181059071	226059071	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	181059071	226059071	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	182039247	227039247	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	183564652	228564652	Rat
1600395	Niddm69	Non-insulin dependent diabetes mellitus QTL 69	4.14	0.0002	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	205233991	267096252	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	186658830	266453731	Rat
1600396	Niddm68	Non-insulin dependent diabetes mellitus QTL 68	4.97	0.0003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631838	Niddm36	Non-insulin dependent diabetes mellitus QTL 36		0.01	insulin secretion trait (VT:0003564)	calculated pancreatic islet insulin release measurement (CMO:0001217)	1	193964073	238964073	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	181059071	226059071	Rat
1600388	Niddm67	Non-insulin dependent diabetes mellitus QTL 67	5.84	0.000004	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	205233991	267096252	Rat
2293694	Bss38	Bone structure and strength QTL 38	7.05	0.0001	femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	1	210980612	255980612	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	139442053	223964440	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	181059071	226059071	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	181059071	226059071	Rat
1300145	Rf7	Renal function QTL 7	2.96		urine creatinine amount (VT:0010540)	urine creatinine level (CMO:0000125)	1	194575422	239575422	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	168063662	213063662	Rat
8655655	Arrd2	Age-related retinal degeneration QTL 2	7.79		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	193400541	238400541	Rat
1358898	Bp255	Blood pressure QTL 255	3.6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	200449456	256003563	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	182535316	227535316	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
731175	Uae20	Urinary albumin excretion QTL 20	3.5	0.0018	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	207163993	269633915	Rat
2300175	Bmd40	Bone mineral density QTL 40	15.4	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	1	210980612	255980612	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	181059071	226059071	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	153679879	232414077	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	160574007	235238518	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	181059071	226059071	Rat
2293655	Bss36	Bone structure and strength QTL 36	10.66	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	210980612	255980612	Rat
1298084	Thym4	Thymus enlargement QTL 4	10.68		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	207243873	252243873	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	181059071	226059071	Rat
2314011	Gluco56	Glucose level QTL 56			blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	209203273	254203273	Rat
8552891	Epfw5	Epididymal fat weight QTL 5	4.4		epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	1	202543537	247543537	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
1358292	Cm37	Cardiac mass QTL 37	6.2	8e-07	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	1	205674651	250674651	Rat
61376	Bp42	Blood pressure QTL 42	23.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	207243873	252243873	Rat
634313	Niddm43	Non-insulin dependent diabetes mellitus QTL 43			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	208479811	269633915	Rat
634312	Bp143	Blood pressure QTL 143	3	0.0002	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	203300512	229359342	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	180739993	225739993	Rat
724559	Pancm1	Pancreatic morphology QTL 1	7.1		islet of Langerhans morphology trait (VT:0005215)	pancreatic islet damage composite score (CMO:0001156)	1	191190115	223964326	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	172718770	228180370	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1358916	Kidm22	Kidney mass QTL 22	3.32		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	212738576	257738576	Rat
2312564	Glom18	Glomerulus QTL 18	2.4	0.003	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	194786607	262083703	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	188241285	250779312	Rat
2292218	Kidm35	Kidney mass QTL 35			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	208798288	253798288	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	139442053	223964440	Rat
1300168	Bp170	Blood pressure QTL 170	2.76		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	192995199	237995199	Rat
61403	Niddm4	Non-insulin dependent diabetes mellitus QTL 4			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	201464383	246464383	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	186298393	231298393	Rat
1641926	Teswt2	Testicular weight QTL 2	2.82		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	1	203675682	248675682	Rat
631658	Cm7	Cardiac mass QTL 7	5.32	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	1	205674651	250674651	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	185979875	230979875	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
1582206	Kidm33	Kidney mass QTL 33	6.9		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	1	197807365	233480676	Rat
2293700	Bmd27	Bone mineral density QTL 27	6.6	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	210980612	255980612	Rat
2293701	Bmd34	Bone mineral density QTL 34	8.3	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	1	210980612	255980612	Rat
8655855	Arrd3	Age-related retinal degeneration QTL 3	3.07		lens clarity trait (VT:0001304)	cataract incidence/prevalence measurement (CMO:0001585)	1	193400541	238400541	Rat
634338	Hcar4	Hepatocarcinoma resistance QTL 4	4.6		liver integrity trait (VT:0010547)	liver tumorous lesion number to liver area ratio (CMO:0001210)	1	202851915	223964440	Rat
6480783	Insul19	Insulin level QTL 19	4.33		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	203300512	213659238	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	173363824	227535316	Rat
1600374	Mcs17	Mammary carcinoma susceptibility QTL 17	3		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	207099883	252099883	Rat
1600363	Hc6	Hypercalciuria QTL 6	2.7		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	210980612	255980612	Rat
2293083	Iddm25	Insulin dependent diabetes mellitus QTL 25	4.18		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	191260175	236260175	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	111949780	228180370	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	185857683	270518180	Rat
2325727	Pia41	Pristane induced arthritis QTL 41			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	188241285	233241285	Rat
7394701	Uae46	Urinary albumin excretion QTL 46	3.6	0.0056	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	210980612	255980612	Rat

Markers in Region

RH127184

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Celera	1	200,918,021 - 200,918,270	UniSTS

RH127507

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	204,747,871 - 204,748,051 (-)	MAPPER	mRatBN7.2
mRatBN7.2	1	204,747,871 - 204,748,051 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	222,809,846 - 222,810,025	NCBI	Rnor6.0
Rnor_6.0	1	221,454,663 - 221,454,842	NCBI	Rnor6.0
Rnor_5.0	1	229,797,092 - 229,797,271	UniSTS	Rnor5.0
Rnor_5.0	1	228,390,099 - 228,390,278	UniSTS	Rnor5.0
RGSC_v3.4	1	210,246,255 - 210,246,434	UniSTS	RGSC3.4
Celera	1	202,274,760 - 202,274,939	UniSTS
Celera	1	200,918,138 - 200,918,317	UniSTS
RH 3.4 Map	1	1521.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	111	90	89	58	25	58	6	217	97	91	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001115042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC097411	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000072493 ⟹ ENSRNOP00000064620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	203,378,577 - 203,392,023 (+)	Ensembl
Rnor_6.0 Ensembl	1	221,448,661 - 221,462,233 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113195 ⟹ ENSRNOP00000081071

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	203,378,582 - 203,384,670 (+)	Ensembl

RefSeq Acc Id:

NM_001115042 ⟹ NP_001108514

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	212,807,863 - 212,821,313 (+)	NCBI
mRatBN7.2	1	203,378,577 - 203,392,027 (+)	NCBI
Rnor_6.0	1	221,448,661 - 221,462,235 (+)	NCBI
Rnor_5.0	1	228,384,097 - 228,394,997 (+)	NCBI
RGSC_v3.4	1	210,247,351 - 210,247,881 (-)	ENTREZGENE
Celera	1	200,912,264 - 200,925,714 (+)	ENTREZGENE

Sequence:

show sequence

GCCTTCTCGCTAGCCGGGCGGGTAATTTGAACGTTTGAAGCCGCAAACCTCCGGGTTGGCGCGA
GCCTAAGTAGGCGACCGCGGCGGAAACTGAGCCCGACCATAGACATGTCGGAGCGGCGAACACG
ATCCGGAGGGGCCGTCCAGCGGTCTGGGCCCAGAACTTCACTTACTAAGCCTTCAAAGTCGTCC
AAGCGGAAATCTGGCTCAGATCTCCCGAACACGTTCCCTGAAGTTTGGCCGAAGACAACTCCAG
CAGCTCCAGTCAGAAAAGCCATCATCTTGAAGAAGATTGTACCTCGTGCAGTAGAGGTCCCAGA
TGTCCACACACCAGTTCGCAGGAGTCCTAGGATCTCTTTTATCTTGGAAAAAGAGAACAACCCT
CCACTCAAGGTGCCCACTAAGGAGGACCTCTTCAAGACGTGTAGCGTCCCTGGCACTCCCTCCA
GCACCCCCGTGCTGTGCGCTCAGAATGTTAAGTCTAACTCTAGAGAAGTGGAGCCGGACACCAG
AGATTTGGAAATGTCTCAGAAAGTCAGGCGGTCCTACAGTCGGCTACAGAGCCTCCATTGTGCC
TCAACCTCCACCCCCGGCCGCCGATCCTTCTTTGGCTTTGAGAGACCTGAAGACTTGCCTGGAG
TCTCACCTGTCATTCGTTCAAAGTTAATGGAGACCCCAAAGGTGCCTGTGAAACACTTGGTTCC
AGATAGAACGCTCCCTGGAATCTCTCCCCCAATTGTGAAAGAGAAACGAAAGAAGAAGGTTCCT
GAGATCACGTCTTCCACAGCCAAGAAGATCGCCCTCTACAAGCAGATTTTGAAAACAGCCATGC
AGCCTACTGAGCCACAACTAGAAGAACCTAAGGACTCCGACGTGGAGCCATCTTCAGAGCAAAT
GTTGAACGAGCAGCCGGAACCCACTGTCACATTCCTGTTCACACTCCTGAACACTCCTGAGCCC
AGAGATGAAGAAACGGACACAGAGATATTGGAGAATCAGTTCGTGGATCAGGATGACTGGGGCC
CTAGGCGGACCTCAGAAGAAATACAGCTTTTGCAGATGGACTGCAATAGGCTTCAGGAAGCTCT
GTACGCTAACCAGAGGGAAAACCTGATCCTTGAAGAGAAGCTAGAAAACCTGCCTACCTTGTTG
TACGGGGACCTGGAGAACATTTTGATCAGTCCAGAGGAATCTAGGGTCACCCAGGACACAGATA
AAAACACCCAAGGCCAAGCAGAGGACATCTATGAGGAAGCAGAGGACATCCATGAGGAAGCAGA
GGACATCCAGGAGGAAGCAGGGGTTACCCAGGAGGAAGTCCAACCTCTTGCACAACCAAAGAGT
GTTTCTGGCCCGCGCTACTCCTTTGATGTTTCCATACCTTTGCCAGCATCCAGCGTATTCCCAG
AAGATTCATACAGGAATGCCCCACCAGTCAGCCCCTCTTTAAGCCCCAGCAATAAAGATCCCCA
CTGATTGCAGAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008760176 ⟹ XP_008758398

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	212,807,877 - 212,813,959 (+)	NCBI
mRatBN7.2	1	203,378,550 - 203,384,673 (+)	NCBI
Rnor_6.0	1	221,448,666 - 221,454,885 (+)	NCBI

Sequence:

show sequence

CTCGCTAGCCGGGCGGGTAATTTGAACGTTTGAAGCCGCAAACCTCCGGGTTGGCGCGAGCCTA
AGTAGGCGACCGCGGCGGAAACTGAGCCCGACCATAGACATGTCGGAGCGGCGAACACGATCCG
GAGGGGCCGTCCAGCGGTCTGGGCCCAGAACTTCACTTACTAAGCCTTCAAAGTCGTCCAAGCG
GAAATCTGGCTCAGATCTCCCGAACACGTTCCCTGAAGTTTGGCCGAAGACAACTCCAGCAGCT
CCAGTCAGAAAAGCCATCATCTTGAAGAAGATTGTACCTCGTGCAGTAGAGGTCCCAGATGTCC
ACACACCAGTTCGCAGGAGTCCTAGGATCTCTTTTATCTTGGAAAAAGAGAACAACCCTCCACT
CAAGGTGCCCACTAAGGAGGACCTCTTCAAGACGTGTAGCGTCCCTGGCACTCCCTCCAGCACC
CCCGTGCTGTGCGCTCAGAATGTTAAGTCTAACTCTAGAGAAGTGGAGCCGGACACCAGAGATT
TGGAAATGTCTCAGAAAGTCAGGCGGTCCTACAGTCGGCTACAGAGCCTCCATTGTGCCTCAAC
CTCCACCCCCGGCCGCCGATCCTTCTTTGGCTTTGAGAGACCTGAAGACTTGCCTGGAGTCTCA
CCTGTCATTCGTTCAAAGTTAATGGAGACCCCAAAGGTGCCTGTGAAACACTTGGTTCCAGATA
GAACGCTCCCTGGAATCTCTCCCCCAATTGTGAAAGAGAAACGAAAGAAGAAGGTTCCTGAGAT
CACGAAGTCAGAGCTGGATAAGTGGGCTGTGGCCATGAATGCTGAATTTGAAGCTGCTGAGCAG
TTTGAGCTTCTGATTGAATGAGATGACTGGGATGCCAATCATCACTGGGCTGAACTGGCTGACT
TCCCTCTTCCTGTACATACTGCGCCCTTTGAGTGAGCAGGATATATGGATTCCTCTTCACTAGC
CTTGTTATTCAGAATGGTGTTGCTGGCCCCTTATCTTGTGTCTAGTTACCCTGGACTTTCTACC
TCTACAGTGTTGGGAATGAGAAGCCATTTCTGCTTTAGCCAGAACTACTGTCAGGAACAGGTTT
AGCTGTGGCCGTCCCTGCTGCTGTGTCAAGCCACCAACCAGTAAAGAGGTTCTGTGTTCTGCTT
TGTTTCTGTAGAGAGAACTCAAAAGACTGGGGAGACAGTTAAATGCTCGAGGGAGGATCTGGAC
ATTGAGTCTGTGGAGTCCAGGATATGAAAGGAGAAGGGGGGCATAGTTGGTTTTTTAACACAGT
GACTGTCGTGTAGGAACCGGTCTGTGTCTGCTCTCTGCTGTTGACATTGGCGAAGGGTGTGCTG
CTGCTTACAGCTGAGAGAGTGCACTTGACAGTGTGGGCCTCAGTGCACCAACGTCAGGTTTATA
GTCTCTACTTTGACCTCTTTCCTCACCCACATGTTAAATACAAGCTGCGTGGTCTCAGCTCTGA
TATGATGTCACGTCACCTCTCACATGCTAGACAGCTGGAGCACTGATGGCAGATTTTGCTGTGA
GCTTAACTATTGTCATGTAAGACCATTGGGGTCTGGGAACACAAGTGGATGTATCATGGTTTCT
GCGGCTCCTGCCTGCCTGTCACCTCCTCAATTATGGTAAAAGCTATGGTTTAAAGGCCATTGGA
CTTCCAACATTTACAAGTTCATTAGAATAGAAGCTGCCAGAATGAGAACTCACGTAAGTACCTG
TTATACCAGGATGCTTTCAGTGGAAAGCTCCTGCAGGGTTTGTTCTCACCTGTTCCTGTGGACC
CCAAGCTGGATCACGCTGAATTGTTACCATCACTGCAGACCTGTCTGCCTTTGAGGAACTACCG
TGCAGCCTAAGGGAAGGGTGGCTTGATTTCAAATAAACTTTTTAGAATTTTGTA

hide sequence

RefSeq Acc Id:

XM_008760177 ⟹ XP_008758399

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	212,817,832 - 212,821,313 (+)	NCBI
mRatBN7.2	1	203,388,237 - 203,392,027 (+)	NCBI
Rnor_6.0	1	221,458,453 - 221,462,235 (+)	NCBI

Sequence:

show sequence

TGATTCTTTTTTTTTCCTTACGACAAAACAGCTCAGTAAGGTAGGATTTGCCTTGGCTCACAGT
CTGAGGGTATAGTCCACCACGCAGGGAGCAATGGCAGCAGGCGTTGAGGAATCTGGTCCTGTAG
CATTTGAGATGCAGGGAGAGATGAGTACCGTGCTCAGATCTCTTTCTGCTTTTCCTTCTCTCTT
GGACCCCAGCCCGTGCAGCAGTGTATTCTCCAAGAGTGGGTCTTCCTCTTCAGTTTACCCACTC
TAGGAACTTCTTCACAGGCATGCCAGGAAATTTGTCTCCTAGGTGATTGTAGATTGTCAAGGTG
ACAATATTGACCATTAACACTGGGTATCCCGTATTGTACTTGCTGAGGGCTTTACCATCTGGGC
TGGGCTTTGGTCGGGCAACACCAGTTCTGAGGACTCTGGCTTGCTGAATAGTGCTGTCTTCCAC
AGCCAAGAAGATCGCCCTCTACAAGCAGATTTTGAAAACAGCCATGCAGCCTACTGAGCCACAA
CTAGAAGAACCTAAGGACTCCGACGTGGAGCCATCTTCAGAGCAAATGTTGAACGAGCAGCCGG
AACCCACTGTCACATTCCTGTTCACACTCCTGAACACTCCTGAGCCCAGAGATGAAGAAACGGA
CACAGAGATATTGGAGAATCAGTTCGTGGATCAGGATGACTGGGGCCCTAGGCGGACCTCAGAA
GAAATACAGCTTTTGCAGATGGACTGCAATAGGCTTCAGGAAGCTCTGTACGCTAACCAGAGGG
AAAACCTGATCCTTGAAGAGAAGCTAGAAAACCTGCCTACCTTGTTGTACGGGGACCTGGAGAA
CATTTTGATCAGTCCAGAGGAATCTAGGGTCACCCAGGACACAGATAAAAACACCCAAGGCCAA
GCAGAGGACATCTATGAGGAAGCAGAGGACATCCATGAGGAAGCAGGACATCCAGGGGAAGCAG
GGGTTACCCAGGAGGAAGTCCAACCTCTTGCACAACCAAAGAGTGTTTCTGGCCCGCGCTACTC
CTTTGATGTTTCCATACCTTTGCCAGCATCCAGCGTATTCCCAGAAGATTCATACAGGAATGCC
CCACCAGTCAGCCCCTCTTTAAGCCCCAGCAATAAAGATCCCCACTGATTGCAGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001108514	(Get FASTA)	NCBI Sequence Viewer
	XP_008758398	(Get FASTA)	NCBI Sequence Viewer
	XP_008758399	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58664	(Get FASTA)	NCBI Sequence Viewer
	AAI58765	(Get FASTA)	NCBI Sequence Viewer
	EDM12566	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000064620.3
	ENSRNOP00000081071.1

RefSeq Acc Id:

NP_001108514 ⟸ NM_001115042

- UniProtKB:

B0BN32 (UniProtKB/TrEMBL), M0R5F5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSERRTRSGGAVQRSGPRTSLTKPSKSSKRKSGSDLPNTFPEVWPKTTPAAPVRKAIILKKIVP
RAVEVPDVHTPVRRSPRISFILEKENNPPLKVPTKEDLFKTCSVPGTPSSTPVLCAQNVKSNSR
EVEPDTRDLEMSQKVRRSYSRLQSLHCASTSTPGRRSFFGFERPEDLPGVSPVIRSKLMETPKV
PVKHLVPDRTLPGISPPIVKEKRKKKVPEITSSTAKKIALYKQILKTAMQPTEPQLEEPKDSDV
EPSSEQMLNEQPEPTVTFLFTLLNTPEPRDEETDTEILENQFVDQDDWGPRRTSEEIQLLQMDC
NRLQEALYANQRENLILEEKLENLPTLLYGDLENILISPEESRVTQDTDKNTQGQAEDIYEEAE
DIHEEAEDIQEEAGVTQEEVQPLAQPKSVSGPRYSFDVSIPLPASSVFPEDSYRNAPPVSPSLS
PSNKDPH

hide sequence

RefSeq Acc Id:	XP_008758398 ⟸ XM_008760176
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZR80 (UniProtKB/TrEMBL), A6HZD5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSERRTRSGGAVQRSGPRTSLTKPSKSSKRKSGSDLPNTFPEVWPKTTPAAPVRKAIILKKIVP RAVEVPDVHTPVRRSPRISFILEKENNPPLKVPTKEDLFKTCSVPGTPSSTPVLCAQNVKSNSR EVEPDTRDLEMSQKVRRSYSRLQSLHCASTSTPGRRSFFGFERPEDLPGVSPVIRSKLMETPKV PVKHLVPDRTLPGISPPIVKEKRKKKVPEITKSELDKWAVAMNAEFEAAEQFELLIE hide sequence

RefSeq Acc Id:	XP_008758399 ⟸ XM_008760177
- Peptide Label:	isoform X2
- UniProtKB:	A6HZD7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQPTEPQLEEPKDSDVEPSSEQMLNEQPEPTVTFLFTLLNTPEPRDEETDTEILENQFVDQDDW GPRRTSEEIQLLQMDCNRLQEALYANQRENLILEEKLENLPTLLYGDLENILISPEESRVTQDT DKNTQGQAEDIYEEAEDIHEEAGHPGEAGVTQEEVQPLAQPKSVSGPRYSFDVSIPLPASSVFP EDSYRNAPPVSPSLSPSNKDPH hide sequence

Ensembl Acc Id:

ENSRNOP00000064620 ⟸ ENSRNOT00000072493

Ensembl Acc Id:

ENSRNOP00000081071 ⟸ ENSRNOT00000113195

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R5F5-F1-model_v2	AlphaFold	M0R5F5	1-454	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690688

Promoter ID:

EPDNEW_R1212

Type:

initiation region

Name:

Cdca5_1

Description:

cell division cycle associated 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	221,448,730 - 221,448,790	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1560863	AgrOrtholog
BioCyc Gene	G2FUF-56620	BioCyc
Ensembl Genes	ENSRNOG00000046635	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000072493.3	UniProtKB/TrEMBL
	ENSRNOT00000113195.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7111047	IMAGE-MGC_LOAD
	IMAGE:8369770	IMAGE-MGC_LOAD
InterPro	Sororin	UniProtKB/TrEMBL
KEGG Report	rno:684771	UniProtKB/TrEMBL
MGC_CLONE	MGC:187653	IMAGE-MGC_LOAD
	MGC:188023	IMAGE-MGC_LOAD
NCBI Gene	Cdca5	ENTREZGENE
PANTHER	PTHR31092	UniProtKB/TrEMBL
	SORORIN	UniProtKB/TrEMBL
Pfam	Sororin	UniProtKB/TrEMBL
PhenoGen	Cdca5	PhenoGen
RatGTEx	ENSRNOG00000046635	RatGTEx
UniProt	A0A8I5ZR80	ENTREZGENE, UniProtKB/TrEMBL
	A6HZD5	ENTREZGENE, UniProtKB/TrEMBL
	A6HZD7	ENTREZGENE, UniProtKB/TrEMBL
	B0BN32	ENTREZGENE, UniProtKB/TrEMBL
	M0R5F5	ENTREZGENE
UniProt Secondary	M0R5F5	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-09-08	Cdca5	cell division cycle associated 5	LOC684771	similar to cell division cycle associated 5	Data merged from RGD:1586724	737654	APPROVED
2008-02-28	Cdca5	cell division cycle associated 5	RGD1560863_predicted	similar to cell division cycle associated 5 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC684771	similar to cell division cycle associated 5			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-07	RGD1560863_predicted	similar to cell division cycle associated 5 (predicted)	LOC499310	similar to cell division cycle associated 5	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC499310	similar to cell division cycle associated 5			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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