Cdca5 (cell division cycle associated 5) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cdca5 (cell division cycle associated 5) Ictidomys tridecemlineatus
Analyze
Symbol: Cdca5
Name: cell division cycle associated 5
RGD ID: 12660915
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN double-strand break repair (ortholog); mitotic cell cycle (ortholog); mitotic chromosome condensation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); familial temporal lobe epilepsy 8 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cell division cycle associated 5, transcript variant X1; cell division cycle associated 5, transcript variant X2; sororin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,842,550 - 7,856,508 (+)NCBI
SpeTri2.0NW_0049365994,285,007 - 4,291,875 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO)
cytoplasm  (ISO)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Cdca5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,842,550 - 7,856,508 (+)NCBI
SpeTri2.0NW_0049365994,285,007 - 4,291,875 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDCA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1165,066,300 - 65,084,164 (-)EnsemblGRCh38hg38GRCh38
GRCh381165,061,009 - 65,084,129 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371164,844,925 - 64,851,512 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,601,503 - 64,608,100 (-)NCBINCBI36hg18NCBI36
Build 341164,601,502 - 64,608,100NCBI
Celera1162,171,226 - 62,177,913 (-)NCBI
Cytogenetic Map11q13.1NCBI
HuRef1161,171,560 - 61,178,247 (-)NCBIHuRef
CHM1_11164,728,627 - 64,735,313 (-)NCBICHM1_1
Cdca5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,135,127 - 6,141,803 (+)NCBIGRCm39mm39
GRCm39 Ensembl196,135,013 - 6,141,807 (+)Ensembl
GRCm38196,085,097 - 6,091,773 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,084,983 - 6,091,777 (+)EnsemblGRCm38mm10GRCm38
MGSCv37196,085,097 - 6,091,773 (+)NCBIGRCm37mm9NCBIm37
MGSCv36196,085,097 - 6,091,773 (+)NCBImm8
Celera195,957,560 - 5,964,236 (+)NCBICelera
Cytogenetic Map19ANCBI
Cdca5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21203,378,550 - 203,392,027 (+)NCBI
Rnor_6.0 Ensembl1221,448,661 - 221,462,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01221,448,661 - 221,462,235 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01228,384,097 - 228,394,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,247,351 - 210,247,881 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1200,912,264 - 200,925,714 (+)NCBICelera
Cytogenetic Map1q43NCBI
Cdca5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542220,114,565 - 20,129,679 (+)NCBIChiLan1.0ChiLan1.0
CDCA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,115,081 - 52,129,223 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,115,203 - 52,120,817 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,723,160 - 50,736,970 (+)NCBI
ROS_Cfam_1.01853,156,720 - 53,170,506 (+)NCBI
UMICH_Zoey_3.11852,251,940 - 52,258,937 (+)NCBI
UNSW_CanFamBas_1.01851,825,978 - 51,839,752 (+)NCBI
UU_Cfam_GSD_1.01852,620,789 - 52,634,766 (+)NCBI
CDCA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,102,982 - 7,113,202 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,103,648 - 7,112,772 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,235,704 - 6,251,945 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDCA5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,151,503 - 9,157,412 (+)NCBI
ChlSab1.1 Ensembl19,151,712 - 9,157,456 (+)Ensembl
Vero_WHO_p1.0NW_023666038106,533,173 - 106,538,620 (+)NCBI
Cdca5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476721,321,286 - 21,327,780 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005333461   ⟹   XP_005333518
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,842,594 - 7,849,539 (+)NCBI
SpeTri2.0NW_0049365994,285,007 - 4,291,875 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021731792   ⟹   XP_021587467
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365994,285,007 - 4,290,366 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284141   ⟹   XP_040140075
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,842,550 - 7,856,508 (+)NCBI
RefSeq Acc Id: XM_040284142   ⟹   XP_040140076
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049477,842,550 - 7,856,508 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005333518 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140075 (Get FASTA)   NCBI Sequence Viewer  
  XP_040140076 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3284729 (Get FASTA)   NCBI Sequence Viewer  
  KAG3284730 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005333518   ⟸   XM_005333461
- Peptide Label: isoform X2
- UniProtKB: I3N7X7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021587467   ⟸   XM_021731792
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040140075   ⟸   XM_040284141
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040140076   ⟸   XM_040284142
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028787 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000020473 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029477 UniProtKB/TrEMBL
InterPro Sororin UniProtKB/TrEMBL
NCBI Gene Cdca5 ENTREZGENE
PANTHER PTHR31092 UniProtKB/TrEMBL
Pfam Sororin UniProtKB/TrEMBL
UniProt I3N7X7 ENTREZGENE, UniProtKB/TrEMBL