CDCA5 (cell division cycle associated 5) - Rat Genome Database

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Gene: CDCA5 (cell division cycle associated 5) Sus scrofa
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Symbol: CDCA5
Name: cell division cycle associated 5
RGD ID: 14157345
Description: ENCODES a protein that exhibits protein-containing complex binding (inferred); INVOLVED IN mitotic cell cycle (ortholog); ASSOCIATED WITH COVID-19 (ortholog); familial temporal lobe epilepsy 8 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN chromatin (inferred); chromosome (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sororin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,102,982 - 7,113,202 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,103,648 - 7,112,772 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,235,704 - 6,251,945 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)
chromosome  (IEA)
cytoplasm  (IEA)
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

Molecular Function

References

Genomics

Comparative Map Data
CDCA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,102,982 - 7,113,202 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,103,648 - 7,112,772 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,235,704 - 6,251,945 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDCA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1165,066,300 - 65,084,164 (-)EnsemblGRCh38hg38GRCh38
GRCh381165,061,009 - 65,084,129 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371164,844,925 - 64,851,512 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,601,503 - 64,608,100 (-)NCBINCBI36hg18NCBI36
Build 341164,601,502 - 64,608,100NCBI
Celera1162,171,226 - 62,177,913 (-)NCBI
Cytogenetic Map11q13.1NCBI
HuRef1161,171,560 - 61,178,247 (-)NCBIHuRef
CHM1_11164,728,627 - 64,735,313 (-)NCBICHM1_1
Cdca5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,135,127 - 6,141,803 (+)NCBIGRCm39mm39
GRCm39 Ensembl196,135,013 - 6,141,807 (+)Ensembl
GRCm38196,085,097 - 6,091,773 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,084,983 - 6,091,777 (+)EnsemblGRCm38mm10GRCm38
MGSCv37196,085,097 - 6,091,773 (+)NCBIGRCm37mm9NCBIm37
MGSCv36196,085,097 - 6,091,773 (+)NCBImm8
Celera195,957,560 - 5,964,236 (+)NCBICelera
Cytogenetic Map19ANCBI
Cdca5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21203,378,550 - 203,392,027 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1203,378,577 - 203,392,023 (+)Ensembl
Rnor_6.01221,448,661 - 221,462,235 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,448,661 - 221,462,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,384,097 - 228,394,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,247,351 - 210,247,881 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1200,912,264 - 200,925,714 (+)NCBICelera
Cytogenetic Map1q43NCBI
Cdca5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542220,114,565 - 20,129,679 (+)NCBIChiLan1.0ChiLan1.0
CDCA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,115,081 - 52,129,223 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,115,203 - 52,120,817 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,723,160 - 50,736,970 (+)NCBI
ROS_Cfam_1.01853,156,720 - 53,170,506 (+)NCBI
UMICH_Zoey_3.11852,251,940 - 52,258,937 (+)NCBI
UNSW_CanFamBas_1.01851,825,978 - 51,839,752 (+)NCBI
UU_Cfam_GSD_1.01852,620,789 - 52,634,766 (+)NCBI
Cdca5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,842,550 - 7,856,508 (+)NCBI
SpeTri2.0NW_0049365994,285,007 - 4,291,875 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDCA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,151,503 - 9,157,412 (+)NCBI
ChlSab1.1 Ensembl19,151,712 - 9,157,456 (+)Ensembl
Vero_WHO_p1.0NW_023666038106,533,173 - 106,538,620 (+)NCBI
Cdca5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476721,321,286 - 21,327,780 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 2 5 1 3
Below cutoff 1 1 3 2 13 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000027221   ⟹   ENSSSCP00000022613
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,102,982 - 7,112,772 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000049864   ⟹   ENSSSCP00000045055
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,103,679 - 7,113,202 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000076895   ⟹   ENSSSCP00000066038
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,103,672 - 7,111,664 (+)Ensembl
RefSeq Acc Id: XM_003122566   ⟹   XP_003122614
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.127,103,648 - 7,112,772 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003122614 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003122614   ⟸   XM_003122566
- UniProtKB: I3LEX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000045055   ⟸   ENSSSCT00000049864
RefSeq Acc Id: ENSSSCP00000022613   ⟸   ENSSSCT00000027221
RefSeq Acc Id: ENSSSCP00000066038   ⟸   ENSSSCT00000076895


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013008 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070021370 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000022613 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000045055 UniProtKB/TrEMBL
  ENSSSCP00000066038 UniProtKB/TrEMBL
  ENSSSCP00070035754 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000027221 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000049864 UniProtKB/TrEMBL
  ENSSSCT00000076895 UniProtKB/TrEMBL
  ENSSSCT00070042511 UniProtKB/TrEMBL
InterPro Sororin UniProtKB/TrEMBL
KEGG Report ssc:100519128 UniProtKB/TrEMBL
NCBI Gene CDCA5 ENTREZGENE
PANTHER PTHR31092 UniProtKB/TrEMBL
Pfam Sororin UniProtKB/TrEMBL
UniProt A0A287AMB4_PIG UniProtKB/TrEMBL
  A0A480JPV6_PIG UniProtKB/TrEMBL
  A0A4X1V334_PIG UniProtKB/TrEMBL
  A0A5G2QVT1_PIG UniProtKB/TrEMBL
  I3LEX4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86468 ENTREZGENE