CDCA5 (cell division cycle associated 5) - Rat Genome Database

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Gene: CDCA5 (cell division cycle associated 5) Sus scrofa
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Symbol: CDCA5
Name: cell division cycle associated 5
RGD ID: 14157345
Description: ENCODES a protein that exhibits protein-containing complex binding (inferred); INVOLVED IN cell division (inferred); double-strand break repair (inferred); mitotic cell cycle (inferred); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); COVID-19 (ortholog); familial temporal lobe epilepsy 8 (ortholog); FOUND IN chromatin (inferred); chromosome (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sororin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,102,982 - 7,113,202 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,103,648 - 7,112,772 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,235,704 - 6,251,945 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)
chromosome  (IEA)
cytoplasm  (IEA)
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

Molecular Function

References

Genomics

Comparative Map Data
CDCA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,102,982 - 7,113,202 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,103,648 - 7,112,772 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,235,704 - 6,251,945 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDCA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,061,093 - 65,084,040 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1165,066,300 - 65,084,164 (-)EnsemblGRCh38hg38GRCh38
GRCh371164,844,925 - 64,851,512 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,601,503 - 64,608,100 (-)NCBINCBI36hg18NCBI36
Build 341164,601,502 - 64,608,100NCBI
Celera1162,171,226 - 62,177,913 (-)NCBI
Cytogenetic Map11q13.1NCBI
HuRef1161,171,560 - 61,178,247 (-)NCBIHuRef
CHM1_11164,728,627 - 64,735,313 (-)NCBICHM1_1
T2T-CHM13v2.01165,070,734 - 65,077,318 (-)NCBI
Cdca5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,135,127 - 6,141,803 (+)NCBIGRCm39mm39
GRCm39 Ensembl196,135,013 - 6,141,807 (+)Ensembl
GRCm38196,085,097 - 6,091,773 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,084,983 - 6,091,777 (+)EnsemblGRCm38mm10GRCm38
MGSCv37196,085,097 - 6,091,773 (+)NCBIGRCm37mm9NCBIm37
MGSCv36196,085,097 - 6,091,773 (+)NCBImm8
Celera195,957,560 - 5,964,236 (+)NCBICelera
Cytogenetic Map19ANCBI
Cdca5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21203,378,550 - 203,392,027 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1203,378,577 - 203,392,023 (+)Ensembl
Rnor_6.01221,448,661 - 221,462,235 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,448,661 - 221,462,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,384,097 - 228,394,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,247,351 - 210,247,881 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1200,912,264 - 200,925,714 (+)NCBICelera
Cytogenetic Map1q43NCBI
Cdca5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542220,114,565 - 20,129,679 (+)NCBIChiLan1.0ChiLan1.0
CDCA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,115,081 - 52,129,223 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,115,203 - 52,120,817 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,723,160 - 50,736,970 (+)NCBI
ROS_Cfam_1.01853,156,720 - 53,170,506 (+)NCBI
UMICH_Zoey_3.11852,251,940 - 52,258,937 (+)NCBI
UNSW_CanFamBas_1.01851,825,978 - 51,839,752 (+)NCBI
UU_Cfam_GSD_1.01852,620,789 - 52,634,766 (+)NCBI
Cdca5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,842,550 - 7,856,508 (+)NCBI
SpeTri2.0NW_0049365994,285,007 - 4,291,875 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDCA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,151,503 - 9,157,412 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl19,151,712 - 9,157,456 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038106,533,173 - 106,538,620 (+)NCBIVero_WHO_p1.0
Cdca5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476721,321,286 - 21,327,780 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 2 5 1 3
Below cutoff 1 1 3 2 13 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000027221   ⟹   ENSSSCP00000022613
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,102,982 - 7,112,772 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000049864   ⟹   ENSSSCP00000045055
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,103,679 - 7,113,202 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000076895   ⟹   ENSSSCP00000066038
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl27,103,672 - 7,111,664 (+)Ensembl
RefSeq Acc Id: XM_003122566   ⟹   XP_003122614
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.127,103,648 - 7,112,772 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003122614 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003122614   ⟸   XM_003122566
- UniProtKB: I3LEX4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000045055   ⟸   ENSSSCT00000049864
RefSeq Acc Id: ENSSSCP00000022613   ⟸   ENSSSCT00000027221
RefSeq Acc Id: ENSSSCP00000066038   ⟸   ENSSSCT00000076895


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000013008 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00015076627 UniProtKB/TrEMBL
  ENSSSCG00025072093 UniProtKB/TrEMBL
  ENSSSCG00030016799 UniProtKB/TrEMBL
  ENSSSCG00035077252 UniProtKB/TrEMBL
  ENSSSCG00045018648 UniProtKB/TrEMBL
  ENSSSCG00050039493 UniProtKB/TrEMBL
  ENSSSCG00055025028 UniProtKB/TrEMBL
  ENSSSCG00060053653 UniProtKB/TrEMBL
  ENSSSCG00065030308 UniProtKB/TrEMBL
  ENSSSCG00070021370 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000022613 UniProtKB/TrEMBL
  ENSSSCP00000045055 UniProtKB/TrEMBL
  ENSSSCP00000066038 UniProtKB/TrEMBL
  ENSSSCP00015043100 UniProtKB/TrEMBL
  ENSSSCP00015043146 UniProtKB/TrEMBL
  ENSSSCP00025043580 UniProtKB/TrEMBL
  ENSSSCP00025043624 UniProtKB/TrEMBL
  ENSSSCP00025043662 UniProtKB/TrEMBL
  ENSSSCP00030010430 UniProtKB/TrEMBL
  ENSSSCP00030010431 UniProtKB/TrEMBL
  ENSSSCP00030010435 UniProtKB/TrEMBL
  ENSSSCP00035045115 UniProtKB/TrEMBL
  ENSSSCP00035045138 UniProtKB/TrEMBL
  ENSSSCP00035045166 UniProtKB/TrEMBL
  ENSSSCP00045021945 UniProtKB/TrEMBL
  ENSSSCP00045021998 UniProtKB/TrEMBL
  ENSSSCP00045022041 UniProtKB/TrEMBL
  ENSSSCP00050022379 UniProtKB/TrEMBL
  ENSSSCP00050022380 UniProtKB/TrEMBL
  ENSSSCP00055039479 UniProtKB/TrEMBL
  ENSSSCP00055039569 UniProtKB/TrEMBL
  ENSSSCP00055039628 UniProtKB/TrEMBL
  ENSSSCP00060031519 UniProtKB/TrEMBL
  ENSSSCP00060031524 UniProtKB/TrEMBL
  ENSSSCP00060031527 UniProtKB/TrEMBL
  ENSSSCP00065017330 UniProtKB/TrEMBL
  ENSSSCP00065017334 UniProtKB/TrEMBL
  ENSSSCP00070035754 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000027221 UniProtKB/TrEMBL
  ENSSSCT00000049864 UniProtKB/TrEMBL
  ENSSSCT00000076895 UniProtKB/TrEMBL
  ENSSSCT00015103419 UniProtKB/TrEMBL
  ENSSSCT00015103492 UniProtKB/TrEMBL
  ENSSSCT00025099079 UniProtKB/TrEMBL
  ENSSSCT00025099164 UniProtKB/TrEMBL
  ENSSSCT00025099248 UniProtKB/TrEMBL
  ENSSSCT00030023246 UniProtKB/TrEMBL
  ENSSSCT00030023254 UniProtKB/TrEMBL
  ENSSSCT00030023270 UniProtKB/TrEMBL
  ENSSSCT00035105153 UniProtKB/TrEMBL
  ENSSSCT00035105205 UniProtKB/TrEMBL
  ENSSSCT00035105254 UniProtKB/TrEMBL
  ENSSSCT00045031700 UniProtKB/TrEMBL
  ENSSSCT00045031767 UniProtKB/TrEMBL
  ENSSSCT00045031821 UniProtKB/TrEMBL
  ENSSSCT00050053284 UniProtKB/TrEMBL
  ENSSSCT00050053289 UniProtKB/TrEMBL
  ENSSSCT00055049407 UniProtKB/TrEMBL
  ENSSSCT00055049509 UniProtKB/TrEMBL
  ENSSSCT00055049578 UniProtKB/TrEMBL
  ENSSSCT00060073067 UniProtKB/TrEMBL
  ENSSSCT00060073078 UniProtKB/TrEMBL
  ENSSSCT00060073088 UniProtKB/TrEMBL
  ENSSSCT00065040916 UniProtKB/TrEMBL
  ENSSSCT00065040924 UniProtKB/TrEMBL
  ENSSSCT00070042511 UniProtKB/TrEMBL
InterPro Sororin UniProtKB/TrEMBL
KEGG Report ssc:100519128 UniProtKB/TrEMBL
NCBI Gene CDCA5 ENTREZGENE
PANTHER PTHR31092 UniProtKB/TrEMBL
Pfam Sororin UniProtKB/TrEMBL
UniProt A0A287AMB4_PIG UniProtKB/TrEMBL
  A0A480JPV6_PIG UniProtKB/TrEMBL
  A0A4X1V334_PIG UniProtKB/TrEMBL
  A0A5G2QVT1_PIG UniProtKB/TrEMBL
  A0A8D0VRN6_PIG UniProtKB/TrEMBL
  A0A8D1YFK9_PIG UniProtKB/TrEMBL
  I3LEX4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86468 ENTREZGENE