Cdca5 (cell division cycle associated 5) - Rat Genome Database

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Gene: Cdca5 (cell division cycle associated 5) Heterocephalus glaber
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Symbol: Cdca5
Name: cell division cycle associated 5
RGD ID: 18907728
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN mitotic cell cycle (ortholog); mitotic chromosome condensation (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); COVID-19 (ortholog); glycogen storage disease V (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sororin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476721,321,286 - 21,327,780 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO)
chromosome  (IEA)
cytoplasm  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Cdca5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476721,321,286 - 21,327,780 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CDCA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,061,093 - 65,084,040 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,066,300 - 65,084,164 (-)EnsemblGRCh38hg38GRCh38
GRCh371164,844,925 - 64,851,512 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,601,503 - 64,608,100 (-)NCBINCBI36Build 36hg18NCBI36
Build 341164,601,502 - 64,608,100NCBI
Celera1162,171,226 - 62,177,913 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,171,560 - 61,178,247 (-)NCBIHuRef
CHM1_11164,728,627 - 64,735,313 (-)NCBICHM1_1
T2T-CHM13v2.01165,054,375 - 65,077,318 (-)NCBIT2T-CHM13v2.0
Cdca5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,135,127 - 6,141,803 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,135,013 - 6,141,807 (+)EnsemblGRCm39 Ensembl
GRCm38196,085,097 - 6,091,773 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,084,983 - 6,091,777 (+)EnsemblGRCm38mm10GRCm38
MGSCv37196,085,097 - 6,091,773 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36196,085,097 - 6,091,773 (+)NCBIMGSCv36mm8
Celera195,957,560 - 5,964,236 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Cdca5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,807,863 - 212,821,313 (+)NCBIGRCr8
mRatBN7.21203,378,550 - 203,392,027 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,378,577 - 203,392,023 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,731,627 - 211,745,181 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,823,942 - 218,837,392 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,515,011 - 211,528,461 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,448,661 - 221,462,235 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,448,661 - 221,462,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,384,097 - 228,394,997 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41210,247,351 - 210,247,881 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1200,912,264 - 200,925,714 (+)NCBICelera
Cytogenetic Map1q43NCBI
Cdca5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542220,114,565 - 20,129,679 (+)NCBIChiLan1.0ChiLan1.0
CDCA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,115,081 - 52,129,223 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,115,203 - 52,120,817 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,723,160 - 50,736,970 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,156,720 - 53,170,506 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11852,251,940 - 52,258,937 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,825,978 - 51,839,752 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,620,789 - 52,634,766 (+)NCBIUU_Cfam_GSD_1.0
Cdca5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,842,550 - 7,856,508 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,284,958 - 4,291,874 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,285,007 - 4,291,875 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDCA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,103,673 - 7,113,202 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,103,648 - 7,112,772 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,235,704 - 6,251,945 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDCA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,151,503 - 9,157,412 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,151,712 - 9,157,456 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,533,173 - 106,538,620 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004852430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01047676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004852430   ⟹   XP_004852487
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476721,321,286 - 21,327,780 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004852487 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004852487   ⟸   XM_004852430
- UniProtKB: G5B6M2 (UniProtKB/TrEMBL),   A0AAX6PI27 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
InterPro Sororin UniProtKB/TrEMBL
NCBI Gene Cdca5 ENTREZGENE
PANTHER SORORIN UniProtKB/TrEMBL
  SORORIN UniProtKB/TrEMBL
Pfam Sororin UniProtKB/TrEMBL
UniProt A0AAX6PI27 ENTREZGENE, UniProtKB/TrEMBL
  G5B6M2 ENTREZGENE, UniProtKB/TrEMBL