Sptbn2 (spectrin, beta, non-erythrocytic 2) - Rat Genome Database

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Gene: Sptbn2 (spectrin, beta, non-erythrocytic 2) Rattus norvegicus
Analyze
Symbol: Sptbn2
Name: spectrin, beta, non-erythrocytic 2
RGD ID: 3751
Description: Predicted to enable actin filament binding activity. Predicted to be a structural constituent of postsynapse. Involved in cellular response to ethanol and synaptic vesicle exocytosis. Located in Golgi membrane; cytoplasmic vesicle; and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 14 and spinocerebellar ataxia type 5. Orthologous to human SPTBN2 (spectrin beta, non-erythrocytic 2); INTERACTS WITH (+)-schisandrin B; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: beta SpIII sigma 1; beta-III spectrin; beta-spectrin 3; glutamate transporter EAAT4-associated protein 41; spectrin beta 3; spectrin beta chain, brain 2; spectrin beta chain, non-erythrocytic 2; spectrin, non-erythroid beta chain 2; spectrin-like protein GTRAP41; SPNB-3; Spnb3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,432,373 - 211,473,016 (+)NCBIGRCr8
mRatBN7.21202,002,970 - 202,045,343 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,002,970 - 202,044,283 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,356,032 - 210,396,701 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,448,385 - 217,489,036 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,139,403 - 210,180,054 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,964,429 - 220,006,811 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,964,429 - 220,005,068 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,828,798 - 226,870,783 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,318,258 - 207,358,896 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11207,471,710 - 207,512,349 (+)NCBI
Celera1199,543,481 - 199,584,122 (+)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP)
benzo[b]fluoranthene  (EXP)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Butylparaben  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (EXP)
DDE  (EXP)
decabromodiphenyl ether  (ISO)
dibenz[a,h]anthracene  (EXP)
dibenzo[a,l]pyrene  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
enzacamene  (EXP)
enzyme inhibitor  (ISO)
epoxiconazole  (EXP)
ethanol  (ISO)
fluoranthene  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
linuron  (EXP)
maneb  (ISO)
manganese(II) chloride  (EXP)
Mesaconitine  (EXP)
methapyrilene  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (EXP)
perfluorononanoic acid  (ISO)
pirinixic acid  (ISO)
prochloraz  (EXP)
procymidone  (EXP)
propiconazole  (ISO)
rac-lactic acid  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
triclosan  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
undecane  (EXP)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. beta III spectrin binds to the Arp1 subunit of dynactin. Holleran EA, etal., J Biol Chem 2001 Sep 28;276(39):36598-605.
4. Modulation of the neuronal glutamate transporter EAAT4 by two interacting proteins. Jackson M, etal., Nature 2001 Mar 1;410(6824):89-93.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Characterization of a new beta-spectrin gene which is predominantly expressed in brain. Ohara O, etal., Brain Res Mol Brain Res 1998 Jun 15;57(2):181-92.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. A novel brain-specific isoform of beta spectrin: isolation and its interaction with Munc13. Sakaguchi G, etal., Biochem Biophys Res Commun 1998 Jul 30;248(3):846-51.
12. Fragmentation of the Golgi apparatus. A role for beta III spectrin and synthesis of phosphatidylinositol 4,5-bisphosphate. Siddhanta A, etal., J Biol Chem 2003 Jan 17;278(3):1957-65.
13. A widely expressed betaIII spectrin associated with Golgi and cytoplasmic vesicles. Stankewich MC, etal., Proc Natl Acad Sci U S A. 1998 Nov 24;95(24):14158-63.
Additional References at PubMed
PMID:3531427   PMID:10477754   PMID:16025302   PMID:16641100   PMID:18796539   PMID:20114050   PMID:20131911   PMID:20231455   PMID:21705333   PMID:22090485   PMID:22664934   PMID:23233669  
PMID:25270371   PMID:25468996   PMID:28576936   PMID:29476059   PMID:30053369   PMID:32357304  


Genomics

Comparative Map Data
Sptbn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,432,373 - 211,473,016 (+)NCBIGRCr8
mRatBN7.21202,002,970 - 202,045,343 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,002,970 - 202,044,283 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,356,032 - 210,396,701 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,448,385 - 217,489,036 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,139,403 - 210,180,054 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,964,429 - 220,006,811 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,964,429 - 220,005,068 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01226,828,798 - 226,870,783 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,318,258 - 207,358,896 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11207,471,710 - 207,512,349 (+)NCBI
Celera1199,543,481 - 199,584,122 (+)NCBICelera
Cytogenetic Map1q43NCBI
SPTBN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,682,497 - 66,744,682 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,682,496 - 66,744,670 (-)EnsemblGRCh38hg38GRCh38
GRCh371166,449,968 - 66,496,687 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,209,299 - 66,245,446 (-)NCBINCBI36Build 36hg18NCBI36
Build 341166,209,298 - 66,245,446NCBI
Celera1163,779,325 - 63,815,933 (-)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1162,780,849 - 62,816,939 (-)NCBIHuRef
CHM1_11166,336,472 - 66,372,624 (-)NCBICHM1_1
T2T-CHM13v2.01166,678,745 - 66,725,466 (-)NCBIT2T-CHM13v2.0
Sptbn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,761,236 - 4,804,006 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl194,761,195 - 4,802,388 (+)EnsemblGRCm39 Ensembl
GRCm38194,711,208 - 4,753,978 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,711,167 - 4,752,360 (+)EnsemblGRCm38mm10GRCm38
MGSCv37194,711,223 - 4,752,352 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36194,711,223 - 4,752,352 (+)NCBIMGSCv36mm8
Celera194,582,341 - 4,623,299 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.1NCBI
Sptbn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,659,489 - 18,699,338 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,659,489 - 18,699,338 (+)NCBIChiLan1.0ChiLan1.0
SPTBN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,911,052 - 67,955,088 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,953,825 - 68,997,850 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01162,042,617 - 62,086,634 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11165,365,588 - 65,409,207 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,365,588 - 65,409,207 (-)Ensemblpanpan1.1panPan2
SPTBN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,631,053 - 50,670,428 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,631,909 - 50,669,916 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,240,573 - 49,279,278 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01851,662,893 - 51,701,379 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1851,662,852 - 51,701,369 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11850,774,519 - 50,803,374 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,344,628 - 50,383,072 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,134,515 - 51,173,008 (+)NCBIUU_Cfam_GSD_1.0
Sptbn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,448,050 - 6,486,151 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365992,890,817 - 2,928,499 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365992,890,404 - 2,928,502 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPTBN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,695,836 - 5,739,415 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,683,414 - 5,739,418 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SPTBN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,543,035 - 7,588,125 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,556,953 - 7,590,720 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038104,830,187 - 104,874,969 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sptbn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476719,694,241 - 19,734,650 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476719,694,471 - 19,734,653 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sptbn2
153 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:365
Count of miRNA genes:196
Interacting mature miRNAs:232
Transcripts:ENSRNOT00000026573
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1195804352257091168Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
1558658Bw59Body weight QTL 593.50.0003body mass (VT:0001259)body weight (CMO:0000012)1178784622223784622Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1184550676229550676Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1171629477216629477Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1123556856242907031Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1195804352257091168Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1201554356246554356Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1169537671214537671Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1171629477216629477Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1185145134221264292Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1158633083203633083Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1183970203243914901Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1191019702246062233Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1173108781218108781Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1201554356246554356Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1171629477216629477Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1181133855226133855Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1171629477216629477Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1201554356246554356Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1197814409242814409Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
2314011Gluco56Glucose level QTL 56blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1199773958202166723Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1193113876238113876Rat
1359018Hrtrt20Heart rate QTL 203.08heart pumping trait (VT:2000009)heart rate (CMO:0000002)1185356336202902618Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1196248093241248093Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1197814409242814409Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1182623426219932796Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1171310381216310381Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1181759564214537555Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1176869060221869060Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1164747424209747424Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1185356336231689108Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1199368955224569684Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1169537671214537671Rat
1331790Bp201Blood pressure QTL 2013.127arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1198211513225126682Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393213533942Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
10059590Kidm44Kidney mass QTL 443.420.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1191033875236033875Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1197697768238755659Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1196248093241248093Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1176550523221550523Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1188377360224054420Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1183970203243914901Rat
634338Hcar4Hepatocarcinoma resistance QTL 44.6liver integrity trait (VT:0010547)liver tumorous lesion number to liver area ratio (CMO:0001210)1193422268214537671Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1180359209218108781Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1197670404242670404Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1181829673224569684Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
1358191Ept10Estrogen-induced pituitary tumorigenesis QTL 103.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)1192825253243914732Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1201554356246554356Rat

Markers in Region
AI228952  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21202,043,295 - 202,043,497 (+)MAPPERmRatBN7.2
Rnor_6.01220,004,759 - 220,004,960NCBIRnor6.0
Rnor_5.01226,869,417 - 226,869,618UniSTSRnor5.0
RGSC_v3.41207,358,587 - 207,358,788UniSTSRGSC3.4
Celera1199,583,805 - 199,584,006UniSTS
RH 3.4 Map11557.0UniSTS
Cytogenetic Map1q42UniSTS
UniSTS:224954  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21202,010,865 - 202,011,013 (+)MAPPERmRatBN7.2
Rnor_6.01219,972,325 - 219,972,472NCBIRnor6.0
Rnor_5.01226,836,837 - 226,836,984UniSTSRnor5.0
RGSC_v3.41207,326,153 - 207,326,300UniSTSRGSC3.4
Celera1199,551,370 - 199,551,517UniSTS
Cytogenetic Map1q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 40 113 91 90 59 25 59 6 208 87 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000088288   ⟹   ENSRNOP00000070189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,002,970 - 202,044,283 (+)Ensembl
Rnor_6.0 Ensembl1219,964,429 - 220,005,068 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099903   ⟹   ENSRNOP00000086115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1202,012,031 - 202,043,613 (+)Ensembl
RefSeq Acc Id: NM_019167   ⟹   NP_062040
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,432,373 - 211,473,016 (+)NCBI
mRatBN7.21202,002,970 - 202,043,613 (+)NCBI
Rnor_6.01219,964,429 - 220,005,076 (+)NCBI
Rnor_5.01226,828,798 - 226,870,783 (+)NCBI
RGSC_v3.41207,318,258 - 207,358,896 (+)RGD
Celera1199,543,481 - 199,584,122 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760092   ⟹   XP_008758314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,439,780 - 211,473,008 (+)NCBI
mRatBN7.21202,012,476 - 202,045,343 (+)NCBI
Rnor_6.01219,974,092 - 220,006,282 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760094   ⟹   XP_008758316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,433,278 - 211,473,008 (+)NCBI
mRatBN7.21202,003,871 - 202,043,605 (+)NCBI
Rnor_6.01219,965,296 - 220,006,811 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103158   ⟹   XP_038959086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81211,439,778 - 211,473,008 (+)NCBI
mRatBN7.21202,012,476 - 202,045,343 (+)NCBI
RefSeq Acc Id: NP_062040   ⟸   NM_019167
- UniProtKB: Q9QWN8 (UniProtKB/Swiss-Prot),   Q9ES68 (UniProtKB/Swiss-Prot),   O88197 (UniProtKB/Swiss-Prot),   A6HYY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758316   ⟸   XM_008760094
- Peptide Label: isoform X2
- UniProtKB: Q9QWN8 (UniProtKB/Swiss-Prot),   Q9ES68 (UniProtKB/Swiss-Prot),   O88197 (UniProtKB/Swiss-Prot),   A6HYY4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758314   ⟸   XM_008760092
- Peptide Label: isoform X1
- UniProtKB: Q9QWN8 (UniProtKB/Swiss-Prot),   Q9ES68 (UniProtKB/Swiss-Prot),   O88197 (UniProtKB/Swiss-Prot),   A0A8I6A0L7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070189   ⟸   ENSRNOT00000088288
RefSeq Acc Id: XP_038959086   ⟸   XM_039103158
- Peptide Label: isoform X3
- UniProtKB: Q9QWN8 (UniProtKB/Swiss-Prot),   Q9ES68 (UniProtKB/Swiss-Prot),   O88197 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000086115   ⟸   ENSRNOT00000099903
Protein Domains
Calponin-homology (CH)   PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QWN8-F1-model_v2 AlphaFold Q9QWN8 1-2388 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690628
Promoter ID:EPDNEW_R1152
Type:multiple initiation site
Name:Sptbn2_1
Description:spectrin, beta, non-erythrocytic 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01219,964,362 - 219,964,422EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3751 AgrOrtholog
BioCyc Gene G2FUF-56744 BioCyc
Ensembl Genes ENSRNOG00000058842 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000088288.2 UniProtKB/TrEMBL
  ENSRNOT00000099903.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.58.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_dom-spectrin-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin_bsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29211 UniProtKB/TrEMBL
NCBI Gene 29211 ENTREZGENE
PANTHER SPECTRIN BETA CHAIN, NON-ERYTHROCYTIC 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00307 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sptbn2 PhenoGen
PIRSF Spectrin_beta_subunit UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS SPECTRINPH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ACTININ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50021 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000058842 RatGTEx
SMART SM00033 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPEC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spectrin repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF47576 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A0L7 ENTREZGENE, UniProtKB/TrEMBL
  A6HYY4 ENTREZGENE, UniProtKB/TrEMBL
  F1MA36_RAT UniProtKB/TrEMBL
  O88197 ENTREZGENE
  Q9ES68 ENTREZGENE
  Q9QWN8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O88197 UniProtKB/Swiss-Prot
  Q9ES68 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-18 Sptbn2  spectrin, beta, non-erythrocytic 2  Spnb3  spectrin beta 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Spnb3  spectrin beta 3    beta-spectrin 3  Name updated 1299863 APPROVED
2002-06-10 Spnb3  beta-spectrin 3      Name updated 70584 APPROVED
2001-12-17 Spnb3  beta-spectrin 3      --select from list or type below-- 69665 APPROVED
2001-12-17 Spnb3  beta-spectrin 3      Symbol updated 69665 APPROVED
2001-12-06 Sptbn2  beta-spectrin 3      Symbol updated to reflect Human and Mouse nomenclature 69665 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localizes to vesicles and the Golgi