D1Rat112 Marker Search Result - Rat Genome Database

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Marker: D1Rat112

Symbol: D1Rat112
Previously known as: oxsts6541; R036-A01; R0036-A01; 
RGD ID: 36580
Expected Size: 141 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21201,284,552 - 201,284,693 (+)MAPPERmRatBN7.2
Rnor_6.01219,238,476 - 219,238,616NCBIRnor6.0
Rnor_5.01226,109,127 - 226,109,267UniSTSRnor5.0
RGSC_v3.41206,574,205 - 206,574,346RGDRGSC3.4
RGSC_v3.41206,574,206 - 206,574,346UniSTSRGSC3.4
RGSC_v3.11206,727,659 - 206,727,799RGD
Celera1198,829,611 - 198,829,751UniSTS
RH 3.4 Map11559.5UniSTS
RH 3.4 Map11559.5RGD
RH 2.0 Map11122.4RGD
FHH x ACI Map196.59RGD
Cytogenetic Map1q42UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   WKY.SHRSP-(D1Rat112-D1Wox29)/Izm   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Bp89   Bw59   Gluco56  
Genes:   Tbx10  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CATTCAATGCCCCTCAGATT
Reverse Primer GTGTGTGCAAGGTGGGATC
 
Template 
ATGCTGCAGGTCGATCTAGAGGATCCCCACATATATTACAAGAGTCTGCTACTGGGAACTAACT
GATTTCACAAAGAAACAGTGTTTCAGTTCGTTATAACATTGCTCTATCTTGAGTAACAAGCTTA
TTACATGCGAATCCTATTGGGAACCTACTGAAATCACCATGATACTTAGATTCCATTCCTATAA
TGTTGCTCTATATTGAAATGCAAACTCATACAAGCATGTCCCATTGGGAACTCACTGAATTCGC
CATGAAATTTTGATTCCATTCGTGAAAATTTTCTATATCCCGAACAGTCCACTTATTACTACTG
CGGCCTATTGGGAACTAACCGAATTCACCATGTTACTCAGCTTCGGTTCACCAAATTTTGATAA
ATCTTTAAAAGTACGGAACTGTGCAAGGTGTGTGCAAGGTGGGATCCNCCCAACTGCGCGCGNC
NTTNNTTGTTGTGTGTTTGTNTGTGTGNGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGN
NATGTTTCCAGCTTCAGACTGGAATCTGAGGGGCATTGAATGGATGGCAGGGAGAGGCAGGGNN
CTGTCACANCC

Region

Nucleotide Sequences
GenBank Nucleotide CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100302803 UniSTS
  100379293 UniSTS
  369118 UniSTS
  688822 UniSTS