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Gene: Banf1 (BAF nuclear assembly factor 1) Rattus norvegicus
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Symbol: Banf1
Name: BAF nuclear assembly factor 1
Description: Exhibits identical protein binding activity. Predicted to be involved in several processes, including DNA integration; chromosome condensation; and negative regulation of viral genome replication. Localizes to condensed chromosome and nucleus. Human ortholog(s) of this gene implicated in progeria. Orthologous to human BANF1 (BAF nuclear assembly factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Baf; barrier to autointegration factor; barrier to autointegration factor 1; barrier-to-autointegration factor; Bcrp1; breakpoint cluster region protein 1; Breakpoint cluster region protein, uterine leiomyoma, 1; L2bp1; L2bp1/Baf; Lap2 binding protein 1; LAP2-binding protein 1; MGC105365
Orthologs:
Homo sapiens (human) : BANF1 (BAF nuclear assembly factor 1)  HGNC  Alliance
Mus musculus (house mouse) : Banf1 (BAF nuclear assembly factor 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Banf1 (BAF nuclear assembly factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : BANF1 (BAF nuclear assembly factor 1)
Canis lupus familiaris (dog) : BANF1 (BAF nuclear assembly factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Banf1 (BAF nuclear assembly factor 1)
Sus scrofa (pig) : BANF1 (BAF nuclear assembly factor 1)
Chlorocebus sabaeus (African green monkey) : BANF1 (BAF nuclear assembly factor 1)
Heterocephalus glaber (naked mole-rat) : Banf1 (BAF nuclear assembly factor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01220,744,195 - 220,746,224 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,744,195 - 220,746,224 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,673,526 - 227,675,555 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,008,344 - 208,010,342 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11208,161,797 - 208,163,795 (-)NCBI
Celera1200,207,485 - 200,209,514 (-)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Banf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 620662
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.