Vps51 (VPS51 subunit of GARP complex)

Gene: Vps51 (VPS51 subunit of GARP complex) Rattus norvegicus

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Symbol:

Vps51

Name:

VPS51 subunit of GARP complex

Description:

INVOLVED IN autophagy (ortholog); endocytic recycling (ortholog); lysosomal transport (ortholog); ASSOCIATED WITH esophageal atresia (ortholog); malignant glioma (ortholog); Pontocerebellar Hypoplasia Type 13 (ortholog); FOUND IN recycling endosome; trans-Golgi network; EARP complex (ortholog); INTERACTS WITH Brodifacoum; aflatoxin B1 (ortholog); carbon nanotube (ortholog)

Type:

protein-coding

Also known as:

chromosome 11 open reading frame 2-like; LOC100361915; vacuolar protein sorting 51 (S. cerevisiae); vacuolar protein sorting 51 homolog; vacuolar protein sorting 51 homolog (S. cerevisiae); VPS51 GARP complex subunit

Orthologs:

Homo sapiens (human) : VPS51 (VPS51 subunit of GARP complex) HGNC Alliance
Mus musculus (house mouse) : Vps51 (VPS51 GARP complex subunit) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps51 (VPS51 subunit of GARP complex)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS51 (VPS51 subunit of GARP complex)
Canis lupus familiaris (dog) : VPS51 (VPS51 subunit of GARP complex)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps51 (VPS51 subunit of GARP complex)
Sus scrofa (pig) : VPS51 (VPS51 subunit of GARP complex)
Chlorocebus sabaeus (African green monkey) : VPS51 (VPS51 subunit of GARP complex)
Heterocephalus glaber (naked mole-rat) : Vps51 (VPS51 subunit of GARP complex)

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Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

NCBI Annotation Information:

Genome Annotation Status: not in current annotation release

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0 Ensembl	1	221,430,648 - 221,440,467 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	228,365,957 - 228,376,416 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	208,705,273 - 208,712,115 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	1	200,894,134 - 200,904,582 (-)	NCBI		Celera
Cytogenetic Map	1		NCBI

Annotation (Toggle Annotation Detail/Summary View)

Disease Annotations

Gene-Chemical Interaction Annotations

Gene Ontology Annotations

References - curated

References - uncurated

Genomics

Comparative Map Data

Position Markers

miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences

Transcriptome

Additional Information

External Database Links

Nomenclature History

More on Vps51
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	2319165
Created:	2010-05-05
Species:	Rattus norvegicus
Last Modified:	2020-06-09
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - ClinVar

Imported Annotations - OMIM