Gene: Patl1 (PAT1 homolog 1, processing body mRNA decay factor) Rattus norvegicus
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Symbol: Patl1
Name: PAT1 homolog 1, processing body mRNA decay factor
Description: ENCODES a protein that exhibits poly(G) binding (ortholog); poly(U) RNA binding (ortholog); RNA binding (ortholog); INVOLVED IN cytoplasmic mRNA processing body assembly (ortholog); deadenylation-dependent decapping of nuclear-transcribed mRNA (ortholog); PARTICIPATES IN microRNA pathway; RNA degradation pathway; FOUND IN CCR4-NOT complex (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); P-body (ortholog); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; (-)-demecolcine (ortholog); 17alpha-ethynylestradiol (ortholog)
AGR Description: Predicted to have poly(G) binding activity and poly(U) RNA binding activity; predicted to be involved in cytoplasmic mRNA processing body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA; predicted to colocalize with the CCR4-NOT complex; orthologous to human PATL1 (PAT1 homolog 1, processing body mRNA decay factor).
Merged Description: Predicted to have poly(G) binding activity and poly(U) RNA binding activity; predicted to be involved in cytoplasmic mRNA processing body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA; predicted to colocalize with the CCR4-NOT complex; orthologous to human PATL1 (PAT1 homolog 1, processing body mRNA decay factor); PARTICIPATES IN microRNA pathway; RNA degradation pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; (-)-demecolcine (ortholog); 17alpha-ethynylestradiol (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC361736; PAT1-like protein 1; Pat1b; protein associated with topoisomerase II homolog 1; protein associated with topoisomerase II homolog 1 (yeast); protein PAT1 homolog 1; protein PAT1 homolog b; RGD1305514; similar to expressed sequence AV312086
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01228,337,756 - 228,369,719 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01235,401,989 - 235,433,952 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,755,170 - 214,787,272 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11214,912,909 - 214,945,743 (+)NCBI
Celera1206,298,832 - 206,330,574 (+)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Patl1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1305514
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.