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Gene: Clcf1 (cardiotrophin-like cytokine factor 1) Rattus norvegicus
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Symbol: Clcf1
Name: cardiotrophin-like cytokine factor 1
Description: Predicted to contribute to ciliary neurotrophic factor receptor binding activity. Predicted to be involved in several processes, including positive regulation of B cell activation; positive regulation of astrocyte differentiation; and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to localize to the CNTFR-CLCF1 complex and CRLF-CLCF1 complex. Human ortholog(s) of this gene implicated in cold-induced sweating syndrome 2. Orthologous to human CLCF1 (cardiotrophin like cytokine factor 1); PARTICIPATES IN cytokine mediated signaling pathway; Jak-Stat signaling pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: B-cell stimulating factor 3; Bsf3; cardiotrophin-like cytokine; Clc; LOC365395; MGC112574; NNT-1; novel neurotrophin-1
Orthologs:
Homo sapiens (human) : CLCF1 (cardiotrophin like cytokine factor 1)  HGNC  Alliance
Mus musculus (house mouse) : Clcf1 (cardiotrophin-like cytokine factor 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Clcf1 (cardiotrophin like cytokine factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CLCF1 (cardiotrophin like cytokine factor 1)
Canis lupus familiaris (dog) : CLCF1 (cardiotrophin like cytokine factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Clcf1 (cardiotrophin like cytokine factor 1)
Sus scrofa (pig) : CLCF1 (cardiotrophin like cytokine factor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01219,468,866 - 219,472,445 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,468,675 - 219,472,654 (+)Ensembl
Rnor_5.01226,338,540 - 226,342,119 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41206,802,745 - 206,806,332 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11206,956,450 - 206,958,891 (+)NCBI
Celera1199,058,438 - 199,062,024 (+)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Clcf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1303171
Created: 2004-12-03
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.