Prdx5 (peroxiredoxin 5) - Rat Genome Database

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Gene: Prdx5 (peroxiredoxin 5) Rattus norvegicus
Analyze
Symbol: Prdx5
Name: peroxiredoxin 5
RGD ID: 71007
Description: Predicted to enable several functions, including cysteine-type endopeptidase inhibitor activity involved in apoptotic process; identical protein binding activity; and peroxidase activity. Predicted to be involved in several processes, including cell redox homeostasis; negative regulation of transcription by RNA polymerase III; and regulation of apoptotic process. Located in mitochondrion and peroxisome. Orthologous to human PRDX5 (peroxiredoxin 5); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3-bis(4-hydroxyphenyl)propionitrile.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: antioxidant enzyme B166; Aoeb166; peroxiredoxin V; peroxiredoxin-5, mitochondrial; peroxisomal antioxidant enzyme; PLP; prx-V; thioredoxin peroxidase PMP20; thioredoxin reductase; thioredoxin-dependent peroxiredoxin 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,529,042 - 213,532,787 (-)NCBIGRCr8
mRatBN7.21204,099,826 - 204,103,589 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,099,826 - 204,114,268 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,450,032 - 212,453,015 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,545,095 - 219,548,082 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,236,145 - 212,239,134 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,164,462 - 222,167,447 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,164,462 - 222,167,447 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,155,316 - 229,158,301 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,583,414 - 209,586,399 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11209,741,843 - 209,744,829 (-)NCBI
Celera1201,633,781 - 201,636,766 (-)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
Prdx5Ratbrucellosis  ISOPrdx5 (Mus musculus)41404681mRNA:increased expression:spleen (mouse)RGD 
Prdx5RatChronic Hepatitis C  ISOPRDX5 (Homo sapiens)9068941mRNA:decreased expression:liver and blood (human)RGDPMID:32103340 and REF_RGD_ID:41404682
Prdx5Ratcommon cold  ISOPRDX5 (Homo sapiens)41404684associated with asthma and protein:increased expression:sputum (human)RGD 
Prdx5Ratsarcoidosis  ISOPRDX5 (Homo sapiens)9068941protein:increased expression:alveolus of lung (human)RGDPMID:22837380 and REF_RGD_ID:41404683
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Original Reference(s)
Prdx5Ratintellectual disability  ISOPRDX5 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Prdx5Ratleukocyte adhesion deficiency 3  ISOPRDX5 (Homo sapiens)8554872ClinVar Annotator: match by term: Leukocyte adhesion deficiency 3ClinVarPMID:28492532
Prdx5Ratmultiple endocrine neoplasia type 1  ISOPRDX5 (Homo sapiens)8554872ClinVar Annotator: match by term: Multiple endocrine neoplasia and type 1ClinVarPMID:17065424 more ...
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Original Reference(s)
Prdx5Ratalopecia areata  ISOPRDX5 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20596022
Prdx5RatStomach Neoplasms  ISOPRDX5 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19424620

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Original Reference(s)
Prdx5Rat(1->4)-beta-D-glucan multiple interactionsISOPrdx5 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of PRDX5 mRNACTDPMID:36331819
Prdx5Rat17beta-estradiol multiple interactionsEXP 6480464[Medroxyprogesterone Acetate co-treated with Estradiol] affects the expression of PRDX5CTDPMID:21159850
Prdx5Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of PRDX5 proteinCTDPMID:22070562
Prdx5Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOPRDX5 (Homo sapiens)64804642 more ...CTDPMID:31675489
Prdx5Rat2,2'-Methylenebis(4-methyl-6-tert-butylphenol) multiple interactionsISOPRDX5 (Homo sapiens)6480464[CYP3A4 protein affects the susceptibility to 2 and 2'-methylenebis(4-methyl-6-tert-butylphenol)] which affects the expression of PRDX5 mRNACTDPMID:38160208
Prdx5Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of PRDX5 mRNACTDPMID:21215274
Prdx5Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of PRDX5 mRNACTDPMID:33387578
Prdx5Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of PRDX5 mRNACTDPMID:34747641
Prdx5Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOPrdx5 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of PRDX5 mRNACTDPMID:21570461 and PMID:24680724
Prdx5Rat2,3-bis(4-hydroxyphenyl)propionitrile increases expressionEXP 64804642 and 3-bis(4-hydroxyphenyl)-propionitrile results in increased expression of PRDX5 proteinCTDPMID:22070562
Prdx5Rat2,4,6-tribromophenol decreases expressionISOPRDX5 (Homo sapiens)64804642 more ...CTDPMID:31675489
Prdx5Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOPrdx5 (Mus musculus)64804642 more ...CTDPMID:38648751
Prdx5Rat2,6-dimethoxyphenol multiple interactionsISOPRDX5 (Homo sapiens)6480464[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in decreased expression of and affects the localization of PRDX5 proteinCTDPMID:38598786
Prdx5Rat3,3',5,5'-tetrabromobisphenol A decreases expressionISOPRDX5 (Homo sapiens)6480464tetrabromobisphenol A results in decreased expression of PRDX5 proteinCTDPMID:31675489
Prdx5Rat4,4'-sulfonyldiphenol increases expressionISOPrdx5 (Mus musculus)6480464bisphenol S results in increased expression of PRDX5 mRNACTDPMID:39298647
Prdx5Rat5-aza-2'-deoxycytidine increases expressionISOPRDX5 (Homo sapiens)6480464Decitabine results in increased expression of PRDX5 mRNACTDPMID:20231622
Prdx5Rat5-aza-2'-deoxycytidine affects expressionISOPRDX5 (Homo sapiens)6480464Decitabine affects the expression of PRDX5 mRNACTDPMID:23300844
Prdx5Ratacetamide decreases expressionEXP 6480464acetamide results in decreased expression of PRDX5 mRNACTDPMID:31881176
Prdx5Ratactinomycin D multiple interactionsISOPRDX5 (Homo sapiens)6480464[Dactinomycin co-treated with nutlin 3] results in increased secretion of PRDX5 proteinCTDPMID:38460933
Prdx5Ratall-trans-retinoic acid increases expressionISOPRDX5 (Homo sapiens)6480464Tretinoin results in increased expression of PRDX5 mRNACTDPMID:33167477

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Biological Process
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Original Reference(s)
Prdx5Ratcell redox homeostasis involved_inIBAFB:FBgn0038570 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Prdx5Ratcellular oxidant detoxification involved_inIEAGO:00046011600115GO_REF:0000108GOCGO_REF:0000108
Prdx5Ratcellular oxidant detoxification involved_inIEAGO:00162091600115GO_REF:0000108GOCGO_REF:0000108
Prdx5Ratcellular oxidant detoxification involved_inIEAGO:01408241600115GO_REF:0000108GOCGO_REF:0000108
Prdx5Ratcellular oxidant detoxification involved_inIEAGO:00083791600115GO_REF:0000108GOCGO_REF:0000108
Prdx5Ratcellular response to oxidative stress involved_inIEAInterPro:IPR0379441600115GO_REF:0000002InterProGO_REF:0000002
Prdx5Ratcellular response to oxidative stress involved_inIBAPANTHER:PTN001625584 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Prdx5Ratcellular response to reactive oxygen species involved_inISOPRDX5 (Homo sapiens)1624291 PMID:18262354RGDPMID:18262354
Prdx5Ratcellular response to reactive oxygen species involved_inIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
Prdx5Rathydrogen peroxide catabolic process involved_inISOPRDX5 (Homo sapiens) and UniProtKB:P30044-21624291 PMID:10514471RGDPMID:10514471
Prdx5Rathydrogen peroxide catabolic process involved_inIBAFB:FBgn0038570 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Prdx5Ratnegative regulation of apoptotic process involved_inISOPRDX5 (Homo sapiens)1624291 PMID:18262354RGDPMID:18262354
Prdx5Ratnegative regulation of apoptotic process involved_inIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
Prdx5Ratnegative regulation of oxidoreductase activity involved_inISOPRDX5 (Homo sapiens) and UniProtKB:P30044-21624291 PMID:15280035RGDPMID:15280035
Prdx5Ratnegative regulation of transcription by RNA polymerase III involved_inIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
Prdx5Ratnegative regulation of transcription by RNA polymerase III involved_inISOPRDX5 (Homo sapiens)1624291 PMID:10095767RGDPMID:10095767
Prdx5Ratpositive regulation of collagen biosynthetic process involved_inISOPRDX5 (Homo sapiens) and UniProtKB:P30044-21624291 PMID:15276323RGDPMID:15276323
Prdx5Ratreactive nitrogen species metabolic process involved_inISOPRDX5 (Homo sapiens) and UniProtKB:P30044-21624291 PMID:15280035RGDPMID:15280035
Prdx5Ratregulation of apoptosis involved in tissue homeostasis involved_inISOPRDX5 (Homo sapiens) and UniProtKB:P30044-21624291 PMID:15276323RGDPMID:15276323
Prdx5Ratresponse to oxidative stress involved_inISOPRDX5 (Homo sapiens)1624291 PMID:10521424RGDPMID:10521424
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Cellular Component
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Original Reference(s)
Prdx5Ratcytoplasm located_inISOPRDX5 (Homo sapiens)1624291 PMID:15785239RGDPMID:15785239
Prdx5Ratcytoplasm located_inIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
Prdx5Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Prdx5Ratcytoplasm is_active_inIBAFB:FBgn0038570 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Prdx5Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Prdx5Ratcytoplasm located_inISOPRDX5 (Homo sapiens) and UniProtKB:P30044-21624291 PMID:10514471RGDPMID:10514471
Prdx5Ratcytoplasmic vesicle located_inIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
Prdx5Ratcytoplasmic vesicle located_inISOPRDX5 (Homo sapiens)1624291 PMID:10095767RGDPMID:10095767
Prdx5Ratcytosol located_inIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
Prdx5Ratcytosol located_inISOPRDX5 (Homo sapiens)1624291 PMID:18262354RGDPMID:18262354
Prdx5Ratmitochondrion located_inISOPRDX5 (Homo sapiens)1624291 PMID:10521424 more ...RGDPMID:10521424 more ...
Prdx5Ratmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
Prdx5Ratmitochondrion located_inIEAUniProtKB-SubCell:SL-01731600115GO_REF:0000044UniProtGO_REF:0000044
Prdx5Ratmitochondrion is_active_inIBAFB:FBgn0038570 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Prdx5Ratmitochondrion located_inIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
Prdx5Ratmitochondrion located_inIDA 1580664PMID:14561759HGNC-UCL 
Prdx5Ratmitochondrion located_inISOPRDX5 (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Prdx5Ratnucleus located_inISOPRDX5 (Homo sapiens)1624291 PMID:10095767 and PMID:15785239RGDPMID:10095767 and PMID:15785239
Prdx5Ratnucleus located_inIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
Prdx5Ratperinuclear region of cytoplasm located_inIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
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Molecular Function
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Original Reference(s)
Prdx5Ratantioxidant activity enablesISOPRDX5 (Homo sapiens) and UniProtKB:P30044-21624291 PMID:10514471RGDPMID:10514471
Prdx5Ratantioxidant activity enablesIEAUniProtKB-KW:KW-00491600115GO_REF:0000043UniProtGO_REF:0000043
Prdx5Ratcysteine-type endopeptidase inhibitor activity involved in apoptotic process enablesIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
Prdx5Ratcysteine-type endopeptidase inhibitor activity involved in apoptotic process enablesISOPRDX5 (Homo sapiens)1624291 PMID:18262354RGDPMID:18262354
Prdx5Ratidentical protein binding enablesISOPRDX5 (Homo sapiens) and UniProtKB:P30044-21624291UniProtKB:P30044-2 and PMID:15046979RGDPMID:15046979
Prdx5Ratoxidoreductase activity enablesIEAInterPro:IPR0137401600115GO_REF:0000002InterProGO_REF:0000002
Prdx5Ratoxidoreductase activity enablesIEAUniProtKB-KW:KW-05601600115GO_REF:0000043UniProtGO_REF:0000043
Prdx5Ratperoxidase activity enablesISOPRDX5 (Homo sapiens)1624291 PMID:10521424RGDPMID:10521424
Prdx5Ratperoxidase activity enablesIEAUniProtKB-KW:KW-05751600115GO_REF:0000043UniProtGO_REF:0000043
Prdx5Ratperoxidase activity enablesIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
Prdx5Ratperoxynitrite reductase activity enablesISOPRDX5 (Homo sapiens) and UniProtKB:P30044-21624291 PMID:15280035RGDPMID:15280035
Prdx5Ratprotein binding enablesISOPRDX5 (Homo sapiens)1624291UniProtKB:P00441 more ...RGDPMID:10514471 more ...
Prdx5Ratprotein binding enablesISOPrdx5 (Mus musculus)1624291UniProtKB:P08228 and PMID:29128334RGDPMID:29128334
Prdx5RatRNA polymerase III transcription regulatory region sequence-specific DNA binding enablesIEAUniProtKB:P30044 and ensembl:ENSP000002654621600115GO_REF:0000107EnsemblGO_REF:0000107
Prdx5RatRNA polymerase III transcription regulatory region sequence-specific DNA binding enablesISOPRDX5 (Homo sapiens)1624291 PMID:10095767RGDPMID:10095767
Prdx5Ratsignaling receptor binding enablesISOPRDX5 (Homo sapiens) and UniProtKB:P30044-21624291UniProtKB:P50542 and PMID:10514471RGDPMID:10514471
Prdx5Ratthioredoxin peroxidase activity enablesISOPRDX5 (Homo sapiens)1624291 PMID:15280035RGDPMID:15280035
Prdx5Ratthioredoxin peroxidase activity enablesIBAPANTHER:PTN001625584 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Prdx5Ratthioredoxin peroxidase activity enablesIEAInterPro:IPR0379441600115GO_REF:0000002InterProGO_REF:0000002
Prdx5Ratthioredoxin peroxidase activity enablesISOPRDX5 (Homo sapiens) and UniProtKB:P30044-21624291 PMID:10751410RGDPMID:10751410
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Reference Title
Reference Citation
1. Peroxiredoxin V contributes to antioxidant defense of lung epithelial cells. Avila PC, etal., Lung. 2008 Mar-Apr;186(2):103-14. doi: 10.1007/s00408-007-9066-2. Epub 2008 Jan 25.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Brucella infection regulates peroxiredoxin-5 protein expression to facilitate intracellular survival by reducing the production of nitric oxide and reactive oxygen species. Hu H, etal., Biochem Biophys Res Commun. 2019 Aug 13;516(1):82-88. doi: 10.1016/j.bbrc.2019.06.026. Epub 2019 Jun 10.
4. Proteomic analysis of rat liver peroxisome: presence of peroxisome-specific isozyme of Lon protease. Kikuchi M, etal., J Biol Chem. 2004 Jan 2;279(1):421-8. Epub 2003 Oct 15.
5. Cloning and characterization of AOEB166, a novel mammalian antioxidant enzyme of the peroxiredoxin family. Knoops B, etal., J Biol Chem 1999 Oct 22;274(43):30451-8.
6. Gene Data Set MGD Curation, June 12, 2002
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
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PMID:10095767   PMID:10514471   PMID:10751410   PMID:14651853   PMID:14662316   PMID:15046979   PMID:15276323   PMID:15280035   PMID:15489334   PMID:15785239   PMID:17519234   PMID:17707404  
PMID:18262354   PMID:18614015   PMID:19056867   PMID:19199708   PMID:19351539   PMID:20178365   PMID:20451279   PMID:21385867   PMID:23106098   PMID:23376485   PMID:23533145   PMID:23580065  
PMID:24044889   PMID:26316108   PMID:26872211   PMID:31375973   PMID:31861721   PMID:32357304  



Prdx5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,529,042 - 213,532,787 (-)NCBIGRCr8
mRatBN7.21204,099,826 - 204,103,589 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1204,099,826 - 204,114,268 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,450,032 - 212,453,015 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,545,095 - 219,548,082 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01212,236,145 - 212,239,134 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,164,462 - 222,167,447 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,164,462 - 222,167,447 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01229,155,316 - 229,158,301 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,583,414 - 209,586,399 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11209,741,843 - 209,744,829 (-)NCBI
Celera1201,633,781 - 201,636,766 (-)NCBICelera
Cytogenetic Map1q43NCBI
PRDX5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,318,121 - 64,321,811 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,318,121 - 64,321,811 (+)EnsemblGRCh38hg38GRCh38
GRCh371164,085,593 - 64,089,283 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361163,842,145 - 63,845,859 (+)NCBINCBI36Build 36hg18NCBI36
Build 341163,842,144 - 63,845,858NCBI
Celera1161,411,653 - 61,415,367 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,413,301 - 60,417,036 (+)NCBIHuRef
CHM1_11163,968,573 - 63,972,308 (+)NCBICHM1_1
T2T-CHM13v2.01164,308,102 - 64,311,792 (+)NCBIT2T-CHM13v2.0
Prdx5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,884,065 - 6,887,474 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,884,065 - 6,887,474 (-)EnsemblGRCm39 Ensembl
GRCm38196,906,697 - 6,910,106 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,906,697 - 6,910,106 (-)EnsemblGRCm38mm10GRCm38
MGSCv37196,981,309 - 6,984,135 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36196,973,863 - 6,976,689 (-)NCBIMGSCv36mm8
Celera196,683,601 - 6,686,426 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.08NCBI
Prdx5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,761,495 - 20,766,976 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,763,822 - 20,766,976 (-)NCBIChiLan1.0ChiLan1.0
PRDX5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,545,189 - 65,548,848 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11166,590,326 - 66,593,993 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01159,675,138 - 59,678,804 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,020,097 - 63,023,624 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,020,097 - 63,023,624 (+)Ensemblpanpan1.1panPan2
PRDX5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,750,977 - 52,754,432 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1851,358,049 - 51,361,693 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,796,390 - 53,800,034 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11852,888,242 - 52,891,882 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,474,829 - 52,478,470 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01853,258,704 - 53,262,348 (-)NCBIUU_Cfam_GSD_1.0
Prdx5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,452,065 - 8,455,009 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,894,409 - 4,897,223 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,894,409 - 4,897,426 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRDX5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,798,670 - 7,802,952 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,798,672 - 7,801,955 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,864,489 - 6,867,774 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRDX5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,912,947 - 9,917,439 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,912,898 - 9,917,361 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038107,253,189 - 107,257,819 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prdx5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,995,681 - 21,997,149 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,995,542 - 21,998,609 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Prdx5
18 total Variants

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:101
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000028687, ENSRNOT00000050964
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 84 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1197814409242814409Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302375Bw83Body weight QTL 834.870.0002body mass (VT:0001259)body weight (CMO:0000012)1197697768242697768Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1201554356246554356Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat

1 to 10 of 84 rows
RH142172  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81213,532,927 - 213,533,227 (+)Marker Load Pipeline
mRatBN7.21204,103,718 - 204,104,018 (+)MAPPERmRatBN7.2
Rnor_6.01222,168,348 - 222,168,647NCBIRnor6.0
Rnor_5.01229,159,202 - 229,159,501UniSTSRnor5.0
RGSC_v3.41209,587,300 - 209,587,599UniSTSRGSC3.4
Celera1201,637,667 - 201,637,966UniSTS
RH 3.4 Map11522.1UniSTS
Cytogenetic Map1q43UniSTS
RH127892  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21204,099,882 - 204,100,067 (+)MAPPERmRatBN7.2
Rnor_6.01222,164,512 - 222,164,696NCBIRnor6.0
Rnor_5.01229,155,366 - 229,155,550UniSTSRnor5.0
RGSC_v3.41209,583,464 - 209,583,648UniSTSRGSC3.4
Celera1201,633,831 - 201,634,015UniSTS
RH 3.4 Map11524.5UniSTS
Cytogenetic Map1q43UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 23 of 23 rows
RefSeq Transcripts NM_001433764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC098622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF110732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 23 of 23 rows

Ensembl Acc Id: ENSRNOT00000028687   ⟹   ENSRNOP00000028687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1204,099,826 - 204,102,836 (-)Ensembl
Rnor_6.0 Ensembl1222,164,462 - 222,167,447 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104624   ⟹   ENSRNOP00000081085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1204,099,826 - 204,114,268 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110859   ⟹   ENSRNOP00000082685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1204,099,833 - 204,102,818 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111281   ⟹   ENSRNOP00000090599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1204,099,833 - 204,102,857 (-)Ensembl
RefSeq Acc Id: NM_053610   ⟹   NP_446062
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,529,042 - 213,532,027 (-)NCBI
mRatBN7.21204,099,833 - 204,102,818 (-)NCBI
Rnor_6.01222,164,462 - 222,167,447 (-)NCBI
Rnor_5.01229,155,316 - 229,158,301 (-)NCBI
RGSC_v3.41209,583,414 - 209,586,399 (-)RGD
Celera1201,633,781 - 201,636,766 (-)RGD
Sequence:
RefSeq Acc Id: XM_039105128   ⟹   XP_038961056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,529,042 - 213,532,787 (-)NCBI
mRatBN7.21204,099,826 - 204,103,589 (-)NCBI
RefSeq Acc Id: XM_039105162   ⟹   XP_038961090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,529,042 - 213,532,315 (-)NCBI
mRatBN7.21204,099,826 - 204,102,991 (-)NCBI
RefSeq Acc Id: XM_039105211   ⟹   XP_038961139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,529,042 - 213,532,352 (-)NCBI
mRatBN7.21204,099,828 - 204,103,207 (-)NCBI
RefSeq Acc Id: XM_039105308   ⟹   XP_038961236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,529,042 - 213,532,442 (-)NCBI
mRatBN7.21204,099,826 - 204,103,214 (-)NCBI
RefSeq Acc Id: XM_063288110   ⟹   XP_063144180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81213,529,042 - 213,532,118 (-)NCBI
1 to 5 of 10 rows
1 to 5 of 10 rows
RefSeq Acc Id: NP_446062   ⟸   NM_053610
- Peptide Label: precursor
- UniProtKB: Q9R063 (UniProtKB/Swiss-Prot),   Q68G22 (UniProtKB/Swiss-Prot),   A6HZI8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028687   ⟸   ENSRNOT00000028687
RefSeq Acc Id: XP_038961056   ⟸   XM_039105128
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038961236   ⟸   XM_039105308
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038961090   ⟸   XM_039105162
- Peptide Label: isoform X2
Redoxin   Thioredoxin

Name Modeler Protein Id AA Range Protein Structure
AF-Q9R063-F1-model_v2 AlphaFold Q9R063 1-213 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13690707
Promoter ID:EPDNEW_R1230
Type:initiation region
Name:Prdx5_1
Description:peroxiredoxin 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01222,167,401 - 222,167,461EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-56583 BioCyc
Ensembl Genes ENSRNOG00000021125 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000028687 ENTREZGENE
Gene3D-CATH Glutaredoxin UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7193191 IMAGE-MGC_LOAD
InterPro PRX5-like UniProtKB/Swiss-Prot
  Redoxin UniProtKB/Swiss-Prot
  Thioredoxin-like_sf UniProtKB/Swiss-Prot
  Thioredoxin_domain UniProtKB/Swiss-Prot
KEGG Report rno:113898 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93296 IMAGE-MGC_LOAD
NCBI Gene 113898 ENTREZGENE
PANTHER PEROXIREDOXIN-5, MITOCHONDRIAL UniProtKB/Swiss-Prot
  PTHR10430 UniProtKB/Swiss-Prot
Pfam Redoxin UniProtKB/Swiss-Prot
PhenoGen Prdx5 PhenoGen
PROSITE THIOREDOXIN_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000021125 RatGTEx
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot
UniProt A0A0G2JSS8_RAT UniProtKB/TrEMBL
  A0A8I5ZR89_RAT UniProtKB/TrEMBL
  A0A8I5ZXJ7_RAT UniProtKB/TrEMBL
  A0A8I6A9W7_RAT UniProtKB/TrEMBL
  A6HZI8 ENTREZGENE, UniProtKB/TrEMBL
  A6HZI9 ENTREZGENE, UniProtKB/TrEMBL
  A6HZJ0_RAT UniProtKB/TrEMBL
  A6HZJ1_RAT UniProtKB/TrEMBL
  PRDX5_RAT UniProtKB/Swiss-Prot
  Q68G22 ENTREZGENE
  Q9R063 ENTREZGENE
UniProt Secondary Q68G22 UniProtKB/Swiss-Prot
1 to 31 of 31 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Prdx5  peroxiredoxin 5      Symbol and Name status set to approved 1299863 APPROVED
2003-05-22 Prdx5  peroxiredoxin 5  Prdx  peroxiredoxin  Symbol updated to reflect Human and Mouse nomenclature 629527 PROVISIONAL
2002-07-09 Prdx6  peroxiredoxin 6      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

Note Type Note Reference
gene_protein 213 amino acids 70622
gene_regulation induced by acute inflammation 70622