Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Vps13a (vacuolar protein sorting 13 homolog A) Rattus norvegicus
Analyze
Symbol: Vps13a
Name: vacuolar protein sorting 13 homolog A
Description: Predicted to be involved in several processes, including flagellated sperm motility; lysosomal protein catabolic process; and sperm mitochondrion organization. Predicted to localize to several cellular components, including bounding membrane of organelle; lipid droplet; and sperm midpiece. Human ortholog(s) of this gene implicated in choreaacanthocytosis and choreatic disease. Orthologous to human VPS13A (vacuolar protein sorting 13 homolog A); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: chorein; LOC309243; LOC361737; RGD1311340; similar to chorein isoform B; vacuolar protein sorting 13 homolog A (S. cerevisiae); vacuolar protein sorting 13A; vacuolar protein sorting 13A (yeast); vacuolar protein sorting-associated protein 13A
Orthologs:
Homo sapiens (human) : VPS13A (vacuolar protein sorting 13 homolog A)  HGNC  Alliance
Mus musculus (house mouse) : Vps13a (vacuolar protein sorting 13A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps13a (vacuolar protein sorting 13 homolog A)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS13A (vacuolar protein sorting 13 homolog A)
Canis lupus familiaris (dog) : VPS13A (vacuolar protein sorting 13 homolog A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps13a (vacuolar protein sorting 13 homolog A)
Sus scrofa (pig) : VPS13A (vacuolar protein sorting 13 homolog A)
Chlorocebus sabaeus (African green monkey) : VPS13A (vacuolar protein sorting 13 homolog A)
Heterocephalus glaber (naked mole-rat) : Vps13a (vacuolar protein sorting 13 homolog A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01235,352,513 - 235,813,597 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1235,653,121 - 235,813,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01242,670,357 - 243,128,666 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41219,987,826 - 220,221,494 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11220,153,337 - 220,385,366 (-)NCBI
Celera1211,235,485 - 211,455,239 (-)NCBICelera
Cytogenetic Map1q43-q51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Vps13a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311340
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-06-09
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.