LOC102546835 (uncharacterized LOC102546835) - Rat Genome Database

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Gene: LOC102546835 (uncharacterized LOC102546835) Rattus norvegicus
Analyze
Symbol: LOC102546835
Name: uncharacterized LOC102546835
RGD ID: 7697895
Description:
Type: ncrna
RefSeq Status: MODEL
Previously known as: LOC103690135; uncharacterized LOC103690135
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81125,100,329 - 125,138,004 (-)NCBIGRCr8
mRatBN7.21115,475,057 - 115,720,360 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01122,757,008 - 122,854,408 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01123,957,173 - 123,991,095 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01124,295,240 - 124,296,223 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1107,884,289 - 107,993,715 (-)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102546835
1351 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)194494440117601394Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
61346Rf2Renal disease susceptibility QTL 23.7urine protein amount (VT:0005160)urine protein level (CMO:0000591)199267916144267916Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)199267916144267916Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
2303591Gluco41Glucose level QTL 412blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1102168504147168504Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1102268556147268556Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1102813953151162766Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1103111621148111621Rat
631569Bp93Blood pressure QTL 930.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847121834139Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847151047847Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001835370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_010060313
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,100,330 - 125,138,002 (-)NCBI
RefSeq Acc Id: XR_010060314
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,100,329 - 125,138,003 (-)NCBI
RefSeq Acc Id: XR_010060316
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,100,330 - 125,138,003 (-)NCBI
RefSeq Acc Id: XR_010060317
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,120,497 - 125,138,003 (-)NCBI
RefSeq Acc Id: XR_010060319
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,120,497 - 125,138,002 (-)NCBI
RefSeq Acc Id: XR_010060320
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81125,120,497 - 125,138,004 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-59133 BioCyc
NCBI Gene LOC102546835 ENTREZGENE
PhenoGen LOC102546835 PhenoGen
RNAcentral URS0000CCE297 RNACentral
  URS0000CCE521 RNACentral
  URS0000CCE728 RNACentral
  URS0000CCEB63 RNACentral
  URS0000CCECEC RNACentral
  URS0000CCF0CA RNACentral
  URS0000CCF13A RNACentral
  URS0000CCF4F7 RNACentral
  URS0000CCF8F5 RNACentral
  URS0000CCFCB4 RNACentral
  URS0000CCFDB4 RNACentral
  URS0000CCFDDC RNACentral
  URS0000CCFEB4 RNACentral
  URS0000CCFFE4 RNACentral
  URS0000CD01B2 RNACentral
  URS0000CD0711 RNACentral
  URS0000CD07C2 RNACentral
  URS0000CD0AB1 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC102546835  uncharacterized LOC102546835  LOC103690135  uncharacterized LOC103690135  Data merged from RGD:9188755 737654 PROVISIONAL
2014-08-25 LOC103690135  uncharacterized LOC103690135      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-18 LOC102546835  uncharacterized LOC102546835      Symbol and Name status set to provisional 70820 PROVISIONAL