Lins1 (lines homolog 1) - Rat Genome Database

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Gene: Lins1 (lines homolog 1) Rattus norvegicus
Analyze
Symbol: Lins1
Name: lines homolog 1
RGD ID: 1308792
Description: Predicted to be involved in cognition. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 27. Orthologous to human LINS1 (lines homolog 1); INTERACTS WITH amphetamine; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: lines homolog (Drosophila); lines homolog 1 (Drosophila); lines homolog 2; lines homolog 2 (Drosophila); Lins; Lins2; LOC308704; RGD1308792; similar to WINS1 protein with Drosophila Lines (Lin) homologous domain
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81129,677,815 - 129,705,399 (+)NCBIGRCr8
mRatBN7.21120,267,586 - 120,295,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1120,267,693 - 120,293,607 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1128,265,667 - 128,291,649 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,437,099 - 135,463,081 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01128,241,271 - 128,267,234 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01127,599,647 - 127,625,583 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1127,604,197 - 127,625,577 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01128,674,717 - 128,701,711 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41121,162,852 - 121,169,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11121,241,784 - 121,247,350 (+)NCBI
Celera1112,470,441 - 112,496,377 (+)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cognition  (ISO)

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23773660  


Genomics

Comparative Map Data
Lins1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81129,677,815 - 129,705,399 (+)NCBIGRCr8
mRatBN7.21120,267,586 - 120,295,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1120,267,693 - 120,293,607 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1128,265,667 - 128,291,649 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01135,437,099 - 135,463,081 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01128,241,271 - 128,267,234 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01127,599,647 - 127,625,583 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1127,604,197 - 127,625,577 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01128,674,717 - 128,701,711 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41121,162,852 - 121,169,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11121,241,784 - 121,247,350 (+)NCBI
Celera1112,470,441 - 112,496,377 (+)NCBICelera
Cytogenetic Map1q22NCBI
LINS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3815100,566,924 - 100,602,184 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl15100,559,369 - 100,603,230 (-)EnsemblGRCh38hg38GRCh38
GRCh3715101,107,129 - 101,142,389 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361598,926,958 - 98,959,927 (-)NCBINCBI36Build 36hg18NCBI36
Celera1577,522,681 - 77,555,652 (-)NCBICelera
Cytogenetic Map15q26.3NCBI
HuRef1577,231,194 - 77,263,814 (-)NCBIHuRef
CHM1_115100,949,360 - 100,983,431 (-)NCBICHM1_1
T2T-CHM13v2.01598,321,577 - 98,357,861 (-)NCBIT2T-CHM13v2.0
Lins1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39766,339,565 - 66,367,004 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl766,339,637 - 66,367,004 (+)EnsemblGRCm39 Ensembl
GRCm38766,689,817 - 66,717,256 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl766,689,889 - 66,717,256 (+)EnsemblGRCm38mm10GRCm38
MGSCv37773,852,990 - 73,859,542 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36766,587,054 - 66,593,606 (+)NCBIMGSCv36mm8
Celera764,161,477 - 64,168,020 (+)NCBICelera
Cytogenetic Map7CNCBI
cM Map736.08NCBI
Lins1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541627,586,257 - 27,595,117 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541627,585,172 - 27,609,780 (-)NCBIChiLan1.0ChiLan1.0
LINS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21690,160,094 - 90,194,720 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11593,859,699 - 93,895,045 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01579,293,426 - 79,328,691 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11598,583,906 - 98,616,407 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1598,583,906 - 98,616,407 (-)Ensemblpanpan1.1panPan2
LINS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1340,415,599 - 40,437,075 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl340,415,163 - 40,436,966 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha343,107,942 - 43,128,495 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0340,816,058 - 40,837,558 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl340,816,412 - 40,837,546 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1340,349,850 - 40,371,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0340,580,455 - 40,601,936 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0340,787,712 - 40,809,208 (+)NCBIUU_Cfam_GSD_1.0
LINS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1139,168,785 - 139,191,163 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11139,168,859 - 139,191,238 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21155,373,215 - 155,395,580 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LINS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12919,036,427 - 19,065,361 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2919,036,305 - 19,044,244 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605927,478,584 - 27,507,513 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lins1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247684,134,796 - 4,145,137 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247684,122,981 - 4,143,202 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lins1
104 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:130
Interacting mature miRNAs:138
Transcripts:ENSRNOT00000018463
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
61346Rf2Renal disease susceptibility QTL 23.7urine protein amount (VT:0005160)urine protein level (CMO:0000591)199267916144267916Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)199267916144267916Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
2303591Gluco41Glucose level QTL 412blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1102168504147168504Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1102268556147268556Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1102813953151162766Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1103111621148111621Rat
631569Bp93Blood pressure QTL 930.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847121834139Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847151047847Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
2313060Bss71Bone structure and strength QTL 712.60.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1118944747163944747Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat

Markers in Region
RH143330  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21120,293,198 - 120,293,465 (+)MAPPERmRatBN7.2
Rnor_6.01127,625,174 - 127,625,440NCBIRnor6.0
Rnor_5.01128,700,310 - 128,700,576UniSTSRnor5.0
RGSC_v3.41121,168,690 - 121,168,956UniSTSRGSC3.4
Celera1112,495,968 - 112,496,234UniSTS
RH 3.4 Map11466.59UniSTS
Cytogenetic Map1q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 14 10 19
Low 3 41 57 41 19 41 8 11 60 25 22 11 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008759574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000018463   ⟹   ENSRNOP00000018463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1120,267,693 - 120,293,607 (+)Ensembl
Rnor_6.0 Ensembl1127,604,197 - 127,625,577 (+)Ensembl
RefSeq Acc Id: NM_001400228   ⟹   NP_001387157
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,876 - 129,703,831 (+)NCBI
mRatBN7.21120,267,653 - 120,293,608 (+)NCBI
RefSeq Acc Id: XM_039094293   ⟹   XP_038950221
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,847 - 129,705,399 (+)NCBI
mRatBN7.21120,267,590 - 120,295,013 (+)NCBI
RefSeq Acc Id: XM_039094297   ⟹   XP_038950225
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,849 - 129,703,831 (+)NCBI
mRatBN7.21120,267,590 - 120,293,608 (+)NCBI
RefSeq Acc Id: XM_039094299   ⟹   XP_038950227
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,852 - 129,703,831 (+)NCBI
mRatBN7.21120,267,589 - 120,293,608 (+)NCBI
RefSeq Acc Id: XM_039094319   ⟹   XP_038950247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,698,657 - 129,703,831 (+)NCBI
mRatBN7.21120,288,434 - 120,293,608 (+)NCBI
RefSeq Acc Id: XM_039094329   ⟹   XP_038950257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,815 - 129,703,831 (+)NCBI
mRatBN7.21120,267,587 - 120,293,608 (+)NCBI
RefSeq Acc Id: XM_063262516   ⟹   XP_063118586
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,852 - 129,703,831 (+)NCBI
RefSeq Acc Id: XM_063262526   ⟹   XP_063118596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81129,677,848 - 129,703,831 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000018463   ⟸   ENSRNOT00000018463
RefSeq Acc Id: XP_038950257   ⟸   XM_039094329
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950227   ⟸   XM_039094299
- Peptide Label: isoform X1
- UniProtKB: D3ZVQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950221   ⟸   XM_039094293
- Peptide Label: isoform X1
- UniProtKB: D3ZVQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950225   ⟸   XM_039094297
- Peptide Label: isoform X1
- UniProtKB: D3ZVQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950247   ⟸   XM_039094319
- Peptide Label: isoform X2
- UniProtKB: A6JBR1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001387157   ⟸   NM_001400228
- UniProtKB: D3ZVQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118596   ⟸   XM_063262526
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063118586   ⟸   XM_063262516
- Peptide Label: isoform X1
- UniProtKB: D3ZVQ9 (UniProtKB/TrEMBL)
Protein Domains
Protein Lines C-terminal   Protein Lines N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVQ9-F1-model_v2 AlphaFold D3ZVQ9 1-742 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308792 AgrOrtholog
BioCyc Gene G2FUF-59004 BioCyc
Ensembl Genes ENSRNOG00000042776 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018463 ENTREZGENE
  ENSRNOT00000018463.8 UniProtKB/TrEMBL
InterPro Lines_C UniProtKB/TrEMBL
  LINES_N UniProtKB/TrEMBL
  Protein_Lines UniProtKB/TrEMBL
KEGG Report rno:308704 UniProtKB/TrEMBL
NCBI Gene 308704 ENTREZGENE
PANTHER PROTEIN LINES HOMOLOG 1 UniProtKB/TrEMBL
  PTHR16057 UniProtKB/TrEMBL
Pfam LINES_C UniProtKB/TrEMBL
  LINES_N UniProtKB/TrEMBL
PhenoGen Lins1 PhenoGen
RatGTEx ENSRNOG00000042776 RatGTEx
UniProt A6JBR1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZVQ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-09-02 Lins1  lines homolog 1  Lins  lines homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-08-03 Lins  lines homolog (Drosophila)  Lins1  lines homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-09-10 Lins  lines homolog (Drosophila)  Lins1  lines homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-06 Lins1  lines homolog 1 (Drosophila)  Lins2  lines homolog 2 (Drosophila)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Lins2  lines homolog 2 (Drosophila)   Lins2_predicted  lines homolog 2 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Lins2_predicted  lines homolog 2 (Drosophila) (predicted)  RGD1308792_predicted  similar to WINS1 protein with Drosophila Lines (Lin) homologous domain (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1308792_predicted  similar to WINS1 protein with Drosophila Lines (Lin) homologous domain (predicted)  LOC308704_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC308704_predicted  similar to WINS1 protein with Drosophila Lines (Lin) homologous domain (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL