D1Rat33 Marker Search Result - Rat Genome Database

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Marker: D1Rat33

Symbol: D1Rat33
Previously known as: oxsts6667; R006-B06; R0006-B06; 
RGD ID: 35166
Expected Size: 160 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21115,540,693 - 115,540,829 (+)MAPPERmRatBN7.2
Rnor_6.01122,614,824 - 122,614,963NCBIRnor6.0
Rnor_5.01123,747,670 - 123,747,809UniSTSRnor5.0
RGSC_v3.41116,084,994 - 116,085,134RGDRGSC3.4
RGSC_v3.41115,946,374 - 115,946,524RGDRGSC3.4
RGSC_v3.41116,153,112 - 116,153,262RGDRGSC3.4
RGSC_v3.11116,231,455 - 116,231,605RGD
Celera1107,817,886 - 107,818,025UniSTS
Celera1107,764,198 - 107,764,347UniSTS
SHRSP x BN Map153.8299UniSTS
SHRSP x BN Map153.8299RGD
FHH x ACI Map155.54RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Hcas2   Hrtrt1   Bp173   Mcs32  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer TGGGAAAAGATGGGAACTTG
Reverse Primer TTTGTCTCTTTAGGGGTGCG
 
Template 
ATGCTGCAGGTCGACTCNAGAGGATCCCCCCAGGAATGTGAACAGAAGTGGTGGTCTACCCTGT
ACTCTCAAGATTGTCCACACTTCTTAGAGTCCTGCACTTTCCCCAGGGGATCTGATTACAGAGA
GCTGTGGGACTGGTCATATCTGGGAAAAGATGGGAACTTGACATATTTTTATTGTTNGTTATCA
CACACACACACACACACACACACACACACACACACACAAAGAGACACAGAGAGAGAGAGAGAGA
GAGACTCCCACCCTCCCACATGCACTCCCGCACCCCTAAAGAGACAAATATNCAATTTGAGTAC
ATACACTGTGAAATATCCANTTTTACTGTATTATGNGATNGGCACAGANGATGTGAGAAACTTC
TTAAGANTTCTNTGTGTAANCANTTNATANCAGNAATNCAGAGAGGNGAGTGNTNNNNATTANC
TNNTCGATAAGGGAGGACCNNGGGGGTACGNGCTCGANTTCAGTANTCCTGGTCATAGNTGTGN
CGTGTGNGNATNGGNATCNCTCGNGTTNCNCANNNNNACGAGCGGGANCNTATTGTGTNNGCCT
NCG
Strain, Expected Size(s)

AVN/Orl 155 BBDP/Rhw 157 BBDR/Rhw 157
BC/CpbU 159 BDIX/Han 159 BDVII/Cub 151
BN-Lx/Cub 151 BN/SsNHsd 151 BP/Cub 165
BUF/Pit 165 COP/OlaHsd 161 DA/PitN 161
DON/Melb 165 F344/Pit 165 FHH/Eur 157
GH/Omr 155 GK/KyoSwe 163 IS/Kyo 165
LEW/Pit 157 LH/Mav 130 LN/Mav 157
LOU/CHan 165 M520/N 161 MHS/Gib 157
MNR/N 165 MNRA/N 165 MNS/Gib 156
MR/Pit 165 NEDH/K 157 NP9 157
ODU/N 161 OKA/Wsl 161 OM/Ztm 151
P5C 157 PVG/Pit 165 SD/Rij 157
SHR/OlaHsd 161 SHRSP/Riv 161 SR/Jr 157
SS/Jr 165 WAG/RijKyo 156 WF/Pit 165
WIST/Nhg 165 WN/N 157 WTC/Kyo 161


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
7697895LOC102546835uncharacterized LOC1025468351115475057115720360Rat



1 to 10 of 56 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat

1 to 10 of 56 rows


Database
Acc Id
Source(s)
NCBI Gene 369185 UniSTS
  444920 UniSTS
  444957 UniSTS