Peg12 (paternally expressed 12) - Rat Genome Database

Name: Peg12
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Peg12 (paternally expressed 12) Rattus norvegicus

Analyze

No known orthologs.

Symbol:

Peg12

Name:

paternally expressed 12

RGD ID:

1307664

Description:

Predicted to be involved in positive regulation of canonical Wnt signaling pathway. Predicted to be active in cytoplasm. Orthologous to human FRAT1 (FRAT regulator of WNT signaling pathway 1); PARTICIPATES IN Wnt signaling pathway.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC308692

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	125,374,399 - 125,377,002 (-)	NCBI		GRCr8
mRatBN7.2	1	115,962,511 - 115,965,114 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	115,962,511 - 115,965,114 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	123,909,225 - 123,911,825 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	131,091,723 - 131,094,323 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	123,917,477 - 123,920,077 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	123,097,861 - 123,100,464 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	123,097,861 - 123,100,464 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	124,235,479 - 124,238,082 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	116,710,210 - 116,711,065 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	116,788,583 - 116,789,408 (-)	NCBI
Celera	1	108,233,224 - 108,235,827 (-)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of canonical Wnt signaling pathway (IBA)

Cellular Component

cytoplasm (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

Wnt signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10534617	PMID:15681612

Genomics

Variants

Variants in Peg12
18 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	83
Count of miRNA genes:	68
Interacting mature miRNAs:	71
Transcripts:	ENSRNOT00000031973
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	78479925	123479925	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
9590300	Scort16	Serum corticosterone level QTL 16	4.39	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	103111621	148111621	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
631199	Cm23	Cardiac mass QTL 23	4.6	0.0004	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	115585465	172949803	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	90532338	123479925	Rat
631569	Bp93	Blood pressure QTL 93		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	106047847	121834139	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	78350581	123350581	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	90508614	173018436	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	90508614	180359386	Rat
61346	Rf2	Renal disease susceptibility QTL 2	3.7		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	99267916	144267916	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	100357752	183970443	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
1300153	Bp171	Blood pressure QTL 171	3.37		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	90664883	143200202	Rat
2317833	Alcrsp19	Alcohol response QTL 19	12.4	0.001	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	100979852	145979852	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642644	214537671	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	115540693	185145286	Rat
1641897	Alcrsp1	Alcohol response QTL 1			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	100979852	145979852	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	92184926	137184926	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	87580395	150700247	Rat
61370	Mcs3	Mammary carcinoma susceptibility QTL 3	2.15		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	102268556	147268556	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
631496	Bp97	Blood pressure QTL 97	3.08		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	106047847	151047847	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
2303591	Gluco41	Glucose level QTL 41	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	102168504	147168504	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94494440	172949803	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	94494440	117601394	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
61399	Tcat1	Tongue tumor resistance QTL 1	3.3		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)	1	99267916	144267916	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	82174743	118944897	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	80592172	125592172	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	92948896	144267916	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	77494165	122494165	Rat
8694370	Bw154	Body weight QTL 154	8.91	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	1	103111621	148111621	Rat
1354623	Rf46	Renal function QTL 46	3.8		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	1	102813953	151162766	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)	1	83547917	128547917	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	77857876	122857876	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	78430536	123430536	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat

Markers in Region

RH129940

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	115,962,539 - 115,962,749 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	123,097,890 - 123,098,099	NCBI	Rnor6.0
Rnor_5.0	1	124,235,508 - 124,235,717	UniSTS	Rnor5.0
RGSC_v3.4	1	116,708,652 - 116,708,861	UniSTS	RGSC3.4
Celera	1	108,233,253 - 108,233,462	UniSTS
Cytogenetic Map	1	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		8	7	6		6			16	12	26
Low	3	28	43	28	19	28	7	10	42	18	15	11	7
Below cutoff		7	7	7		7	1	1	14	5			1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001170562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031973 ⟹ ENSRNOP00000058978

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	115,962,511 - 115,965,114 (-)	Ensembl
Rnor_6.0 Ensembl	1	123,097,861 - 123,100,464 (-)	Ensembl

RefSeq Acc Id:

NM_001170562 ⟹ NP_001164033

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	125,374,399 - 125,377,002 (-)	NCBI
mRatBN7.2	1	115,962,511 - 115,965,114 (-)	NCBI
Rnor_6.0	1	123,097,861 - 123,100,464 (-)	NCBI
Rnor_5.0	1	124,235,479 - 124,238,082 (-)	NCBI
Celera	1	108,233,224 - 108,235,827 (-)	NCBI

Sequence:

show sequence

CGGTGCCACTGCCCAGTGGTCCCGGCTTCCGTGTCCAAGGCTCAGCCCCCTCCCGGCCCGGACC
TCCGCCCTGCTCCCTCCCCAGTCACGGCCCACCGAGCCTGCGGGCAAAGAAGCCTCCAGCAACA
CCAGCACAGCCGCGAGTACCGGGGTAGGGGGCCATGCCGTGCCTGAGGGAGGAGGAGGAAGCGA
GCGACCAGGCGGATGGGGAGGAGGACAACGACAGCTTCCTCCTGCTGCAGCAGTCGGTGACTCT
GGGCGGCTCGGCAGACGTGGACCAACTCATCGCCCGGATCGGCGAGACGCTGCAGCTGGACACG
GCGCACGACAGTCCCGCCTCGCAGTGTGCGGCCCCGGGCCCCCCACCAGCGCCCCCGCGGGTCC
TGGCGGCGCTGCCGGCGGACAAAGCCAGGGCCCCAACGAGGCGGCTGCTGCGGCTGGCAGCTTC
ACCGGAAACCTGGGACCCTGCGCCCCCCGGGGCCATGCGCTGTGTGCTGGGGGAGCGCGGGCGC
GTGCGGGACCGGGCAGCGCCCTACAGCGTGGCAGAGATCGCCCCGGGCCCCAGCGTGCTGCCCC
AGCAGCAGGGCCTTGAGGGACCCCAGGGAACCGGCAAATTAAGCATCCCACAGCCACTGTCTGG
CCCGTGCCGGCGGGGTTGGCTCCGGAACACAGCCGCGTCCCGCCGCCTGCAACAGCGACGCGGA
TCTCATCTGGAGACCCGCACTGGCGAAGACGACCCGCCCCGGCTCCTGCAGCAGCTCTTACTTT
CGGGAAACCTCATCAAGGAGGCGGTGCGGAGACTTCATTCACGAAGGCTACAGCTACAGGCGAA
GCTTCCCGCACACCCGTTCTTGGAGCCTCTGTCAGCCCCAGTGCATGAGCCACTTTCACCCGGG
AGCCCTCGCGCGGCCTGCAGCGACCCTGGCGCTTGTGTGAGGAGGGCGCAGCTCAGAAATGGGG
ACGACCTTCTTGTCTCTGGCAGCTAACAATCTAGGTGGCTACAGCACCAGCCTATAGCCGGGGA
TCAAGGGTTTCCCCCAACCGAGGCTGGTGGAGGAAAATAAGCTAAGGAAGACAGCCGAAATATC
GCATAGATTTTCATAGGTAACTGAAGTTGAGAGCCCTAAACTGTTTGAAACCCAGGACTTAGGT
TTTTGTAAGGCAGATTCTATAGAGCGCATCGCAGGCTGTCAGCAGGACTCCTTTTTTGGCATGT
TCCAACCTGGTCTCTGCAATTCCGCAAACTCCCCTGGCCACGAGGGCAACCACGTGGCATGCTC
TCTGGATAGCTCAGCCAGCTATGGAACCAAGGACGATGATCCCTGTTACTTGCTGTACTTTTCA
GGGTTGGTTCATGACTCACTTTGGGGGAGGGGAAAAGAAGAGTGGACTTAAATTCAGGGAGCAC
CACAAAATGCCACACTTGAACTTTTTAGGACAGTTAAAAGACCATCTCATCTTTTGCGGTGTTG
GTTTCAATGTAAAACATGCGGTATCACGAGAGGACTCTCTTGGGGGCTAAGTAGAAGTAACCGT
TTTTTGTCTGTCCCCTTTATTTCAAAGGATTGCTGCTGGCAGAGTGTTGAGGGGAAGTTGTACC
CCACGAATGTAGGGTGGGAGGCGGCAGTGAGAAATTTTGGGTAATGGAAGGGTGCGGCGAAGCA
CTGAGTGAACCTTCCTGCCCTTTGTAAAGTGTGCTGTGCAGAGTGGGGAAAATCCATCCCTCTT
TGGGTTCGAAGTCACTGATTGCTGGGTGTGCACCATGCTGTGGGGCTCCAGCACGGAGACTAAC
CGAAATGCCTTGCTGGGAGAAAAACACATTATTTTTGCAAATGTTGGAGTCCACTAAGGACGCT
TCTGCCACCTTCTGGAGGGGGTAGAGGAGGCGGGTCCTGAGTGTCTGTGCTTCGAACCAGAGGT
CACCGCCCCTCCCCCTCCTCCTGGCTTACAGAGAAACTGCCTTGAGACAGTGATCTAGTACTAC
CTTTTCCCCTTAGTTCTGCTGCCCTACTCAAGCGGGGTGCTGCTGGTGATGCTAGTGTCCAGGG
TAGGGGACTGGGAAAGTTCCAAATAACGAGCACTCTTGGGACACAGCCTCACACAACCGCTTAT
CTGGGGCTCTCAGGGCTGCTTGTAATAACAGCTGCAGTTCTCTGGATAGACTGAGTTGATTTCC
TCCTTCTGGACCTCCCCCCAGCTGTGCCTGCTCGTCTTTGTAAGCGGAGGAAATGTAGTAGAAA
ACGTGACCCTCCAAATGGGAAAGCTGCAGGCTTTTTGCTATTGTGACTGTGAAGTGCTTGGAAA
CACTGTTCCCTCTGAGCAACTGTTTCGTTTTACTTTTTATGGAGTCAAATGGCTTGTTCCTCAT
CCAGATGTGGCTATTGACATATCCACTCTTCGAACCCGAGTGACTGGAATTGTCGCTGTTCTGA
TTGTAGGATTTTAACTTAACTGAAATAACTGTTTTTGAATAAATGTCTTGGATTTTTTTTTCAA
AAAAAAAAAAAGAGAAGCCTGAAAGTATAAACTAGGACATTTTGTATACTTTTTTATGAGTCTA
GTGCATGCATACCAAAATAAATGAGACTTGAGTTCTTAATGGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001164033	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000058978.1

RefSeq Acc Id:

NP_001164033 ⟸ NM_001170562

- UniProtKB:

D3Z8R0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPCLREEEEASDQADGEEDNDSFLLLQQSVTLGGSADVDQLIARIGETLQLDTAHDSPASQCAA
PGPPPAPPRVLAALPADKARAPTRRLLRLAASPETWDPAPPGAMRCVLGERGRVRDRAAPYSVA
EIAPGPSVLPQQQGLEGPQGTGKLSIPQPLSGPCRRGWLRNTAASRRLQQRRGSHLETRTGEDD
PPRLLQQLLLSGNLIKEAVRRLHSRRLQLQAKLPAHPFLEPLSAPVHEPLSPGSPRAACSDPGA
CVRRAQLRNGDDLLVSGS

hide sequence

Ensembl Acc Id:

ENSRNOP00000058978 ⟸ ENSRNOT00000031973

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z8R0-F1-model_v2	AlphaFold	D3Z8R0	1-274	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690091

Promoter ID:

EPDNEW_R616

Type:

single initiation site

Name:

Peg12_1

Description:

paternally expressed 12

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	123,100,493 - 123,100,553	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307664	AgrOrtholog
BioCyc Gene	G2FUF-59114	BioCyc
Ensembl Genes	ENSRNOG00000024429	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031973.4	UniProtKB/TrEMBL
InterPro	GSK3-bd	UniProtKB/TrEMBL
KEGG Report	rno:308692	UniProtKB/TrEMBL
NCBI Gene	308692	ENTREZGENE
PANTHER	PROTO-ONCOGENE FRAT1	UniProtKB/TrEMBL
	PTHR35154	UniProtKB/TrEMBL
Pfam	GSK-3_bind	UniProtKB/TrEMBL
PhenoGen	Peg12	PhenoGen
RatGTEx	ENSRNOG00000024429	RatGTEx
UniProt	D3Z8R0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Peg12	paternally expressed 12	Peg12_predicted	paternally expressed 12 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Peg12_predicted	paternally expressed 12 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)