Nipa1 (NIPA magnesium transporter 1) - Rat Genome Database

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Gene: Nipa1 (NIPA magnesium transporter 1) Rattus norvegicus
Analyze
Symbol: Nipa1
Name: NIPA magnesium transporter 1
RGD ID: 1305401
Description: Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be located in early endosome and plasma membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 6. Orthologous to human NIPA1 (NIPA magnesium transporter 1); INTERACTS WITH 17alpha-ethynylestradiol; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC308668; magnesium transporter NIPA1; non imprinted in Prader-Willi/Angelman syndrome 1; non imprinted in Prader-Willi/Angelman syndrome 1 homolog; non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human); SLC56A1; solute carrier family 56 member 1; spastic paraplegia 6 (autosomal dominant); Spg6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21106,834,000 - 106,875,148 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1106,834,000 - 106,874,790 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1112,228,307 - 112,265,916 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01120,700,180 - 120,737,786 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01113,949,137 - 113,986,743 (-)NCBIRnor_WKY
Rnor_6.01114,385,484 - 114,422,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,386,757 - 114,422,733 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01115,392,570 - 115,410,234 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41107,373,113 - 107,390,777 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11107,452,013 - 107,480,546 (-)NCBI
Celera1101,049,294 - 101,085,273 (-)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17166836   PMID:20816793  


Genomics

Comparative Map Data
Nipa1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21106,834,000 - 106,875,148 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1106,834,000 - 106,874,790 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1112,228,307 - 112,265,916 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01120,700,180 - 120,737,786 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01113,949,137 - 113,986,743 (-)NCBIRnor_WKY
Rnor_6.01114,385,484 - 114,422,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1114,386,757 - 114,422,733 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01115,392,570 - 115,410,234 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41107,373,113 - 107,390,777 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11107,452,013 - 107,480,546 (-)NCBI
Celera1101,049,294 - 101,085,273 (-)NCBICelera
Cytogenetic Map1q22NCBI
NIPA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381522,786,225 - 22,829,789 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1522,773,063 - 22,829,789 (+)EnsemblGRCh38hg38GRCh38
GRCh371523,043,279 - 23,086,843 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361520,594,720 - 20,637,877 (-)NCBINCBI36Build 36hg18NCBI36
Celera151,293,128 - 1,336,596 (+)NCBICelera
Cytogenetic Map15q11.2NCBI
HuRef151,354,946 - 1,373,627 (-)NCBIHuRef
CHM1_11522,992,596 - 23,036,148 (-)NCBICHM1_1
T2T-CHM13v2.01520,458,058 - 20,501,621 (+)NCBIT2T-CHM13v2.0
Nipa1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39755,628,232 - 55,669,348 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl755,627,315 - 55,669,702 (-)EnsemblGRCm39 Ensembl
GRCm38755,978,484 - 56,019,600 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl755,977,567 - 56,019,954 (-)EnsemblGRCm38mm10GRCm38
MGSCv37763,233,854 - 63,274,943 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36755,846,503 - 55,887,592 (-)NCBIMGSCv36mm8
Celera753,324,994 - 53,365,742 (-)NCBICelera
Cytogenetic Map7B5NCBI
Nipa1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555331,249,500 - 1,284,588 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555331,244,232 - 1,304,497 (-)NCBIChiLan1.0ChiLan1.0
NIPA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11520,612,002 - 20,655,771 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1520,617,547 - 20,655,686 (-)Ensemblpanpan1.1panPan2
NIPA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1332,003,454 - 32,056,802 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl332,003,033 - 32,051,684 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha334,626,242 - 34,679,592 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0332,279,913 - 32,333,487 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl332,279,913 - 32,333,493 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1331,813,483 - 31,866,831 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0332,062,845 - 32,116,213 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0332,173,633 - 32,227,205 (-)NCBIUU_Cfam_GSD_1.0
Nipa1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640120,516,973 - 120,537,137 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647138,364,940 - 38,407,314 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647138,363,521 - 38,403,647 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIPA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1532,208,860 - 32,260,006 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11532,208,857 - 32,260,064 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NIPA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12653,718,832 - 53,746,456 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605436,451,033 - 36,492,084 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nipa1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248962,637,891 - 2,683,078 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248962,638,161 - 2,684,524 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nipa1
162 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:108
Count of miRNA genes:84
Interacting mature miRNAs:97
Transcripts:ENSRNOT00000068501
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)194494440117601394Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642722214537671Rat
61346Rf2Renal disease susceptibility QTL 23.7urine protein amount (VT:0005160)urine protein level (CMO:0000591)199267916144267916Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)199267916144267916Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
2303591Gluco41Glucose level QTL 412blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1102168504147168504Rat
61370Mcs3Mammary carcinoma susceptibility QTL 32.15mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1102268556147268556Rat
1354623Rf46Renal function QTL 463.8blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)1102813953151162766Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
8694370Bw154Body weight QTL 1548.910.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)1103111621148111621Rat
631569Bp93Blood pressure QTL 930.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847121834139Rat
631496Bp97Blood pressure QTL 973.08arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1106047847151047847Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 1 68 2 12 11
Low 3 43 49 41 18 41 8 10 6 33 29 8
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000068501   ⟹   ENSRNOP00000061757
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1106,838,713 - 106,874,692 (-)Ensembl
Rnor_6.0 Ensembl1114,386,757 - 114,422,733 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117016   ⟹   ENSRNOP00000089803
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1106,834,000 - 106,874,790 (-)Ensembl
RefSeq Acc Id: NM_001107519   ⟹   NP_001100989
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21106,838,713 - 106,874,692 (-)NCBI
Rnor_6.01114,386,757 - 114,422,741 (-)NCBI
Rnor_5.01115,392,570 - 115,410,234 (-)NCBI
RGSC_v3.41107,373,113 - 107,390,777 (-)RGD
Celera1101,049,294 - 101,085,273 (-)RGD
Sequence:
RefSeq Acc Id: XM_039112586   ⟹   XP_038968514
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21106,834,000 - 106,874,665 (-)NCBI
RefSeq Acc Id: XM_039112593   ⟹   XP_038968521
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21106,840,947 - 106,875,148 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100989 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968514 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968521 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL86455 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001100989   ⟸   NM_001107519
- UniProtKB: F1M5J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000061757   ⟸   ENSRNOT00000068501
RefSeq Acc Id: XP_038968514   ⟸   XM_039112586
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968521   ⟸   XM_039112593
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000089803   ⟸   ENSRNOT00000117016

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M5J3-F1-model_v2 AlphaFold F1M5J3 1-321 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690086
Promoter ID:EPDNEW_R610
Type:multiple initiation site
Name:Nipa1_1
Description:magnesium transporter NIPA1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01114,422,764 - 114,422,824EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305401 AgrOrtholog
BioCyc Gene G2FUF-59456 BioCyc
Ensembl Genes ENSRNOG00000042702 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000061757 ENTREZGENE
  ENSRNOP00000061757.3 UniProtKB/TrEMBL
  ENSRNOP00000089803.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068501 ENTREZGENE
  ENSRNOT00000068501.3 UniProtKB/TrEMBL
  ENSRNOT00000117016.1 UniProtKB/TrEMBL
InterPro Mg_trans_NIPA UniProtKB/TrEMBL
NCBI Gene 308668 ENTREZGENE
PANTHER PTHR12570 UniProtKB/TrEMBL
Pfam Mg_trans_NIPA UniProtKB/TrEMBL
PhenoGen Nipa1 PhenoGen
UniProt A0A8I6ADA4_RAT UniProtKB/TrEMBL
  F1M5J3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-01 Nipa1  NIPA magnesium transporter 1  Nipa1  non imprinted in Prader-Willi/Angelman syndrome 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-02-27 Nipa1  non imprinted in Prader-Willi/Angelman syndrome 1  Nipa1  non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Nipa1  non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)   Nipa1_predicted  non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Nipa1_predicted  non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human) (predicted)  Spg6_predicted  spastic paraplegia 6 (autosomal dominant) (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Spg6_predicted  spastic paraplegia 6 (autosomal dominant) (predicted)      Symbol and Name status set to approved 70820 APPROVED