Fancf (FA complementation group F) - Rat Genome Database

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Gene: Fancf (FA complementation group F) Rattus norvegicus
Analyze
Symbol: Fancf
Name: FA complementation group F
RGD ID: 1561456
Description: Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in DNA damage response. Predicted to act upstream of or within ovarian follicle development; protein ubiquitination; and spermatogenesis. Predicted to be located in nucleoplasm. Predicted to be part of Fanconi anaemia nuclear complex and chromatin. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group F; adenocarcinoma in situ; and granulosa cell tumor. Orthologous to human FANCF (FA complementation group F); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fanconi anemia, complementation group F; LOC499155; RGD1561456; similar to Fanconi anemia, complementation group F
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81110,585,054 - 110,587,870 (-)NCBIGRCr8
mRatBN7.21101,449,120 - 101,451,936 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1101,450,389 - 101,451,923 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1106,857,994 - 106,860,810 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01115,329,884 - 115,332,700 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01108,633,029 - 108,635,845 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01107,229,516 - 107,232,321 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1107,231,292 - 107,232,305 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01108,272,291 - 108,274,234 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41101,664,895 - 101,666,720 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera195,615,737 - 95,618,542 (-)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Fancf-deficient mice are prone to develop ovarian tumours. Bakker ST, etal., J Pathol. 2012 Jan;226(1):28-39. doi: 10.1002/path.2992. Epub 2011 Nov 14.
2. The Fanconi anaemia gene FANCF encodes a novel protein with homology to ROM. de Winter JP, etal., Nat Genet. 2000 Jan;24(1):15-6.
3. CpG methylation of the FHIT, FANCF, cyclin-D2, BRCA2 and RUNX3 genes in Granulosa cell tumors (GCTs) of ovarian origin. Dhillon VS, etal., Mol Cancer. 2004 Dec 1;3:33.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Promoter hypermethylation of FANCF and outcome in advanced ovarian cancer. Lim SL, etal., Br J Cancer. 2008 Apr 22;98(8):1452-6. Epub 2008 Apr 15.
6. Inactivation of the Fanconi anemia/BRCA pathway in lung and oral cancers: implications for treatment and survival. Marsit CJ, etal., Oncogene. 2004 Jan 29;23(4):1000-4.
7. Promoter hypermethylation of FANCF: disruption of Fanconi Anemia-BRCA pathway in cervical cancer. Narayan G, etal., Cancer Res. 2004 May 1;64(9):2994-7.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Promoter hypermethylation of FANCF plays an important role in the occurrence of ovarian cancer through disrupting Fanconi anemia-BRCA pathway. Wang Z, etal., Cancer Biol Ther. 2006 Mar;5(3):256-60. Epub 2006 Mar 5.
14. Downregulation of Fanconi anemia genes in sporadic head and neck squamous cell carcinoma. Wreesmann VB, etal., ORL J Otorhinolaryngol Relat Spec. 2007;69(4):218-25. Epub 2007 Apr 4.
Additional References at PubMed
PMID:20347428  


Genomics

Comparative Map Data
Fancf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81110,585,054 - 110,587,870 (-)NCBIGRCr8
mRatBN7.21101,449,120 - 101,451,936 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1101,450,389 - 101,451,923 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1106,857,994 - 106,860,810 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01115,329,884 - 115,332,700 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01108,633,029 - 108,635,845 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01107,229,516 - 107,232,321 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1107,231,292 - 107,232,305 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01108,272,291 - 108,274,234 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41101,664,895 - 101,666,720 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera195,615,737 - 95,618,542 (-)NCBICelera
Cytogenetic Map1q22NCBI
FANCF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381122,622,533 - 22,625,823 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1122,622,533 - 22,625,823 (-)EnsemblGRCh38hg38GRCh38
GRCh371122,644,079 - 22,647,369 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361122,600,655 - 22,603,963 (-)NCBINCBI36Build 36hg18NCBI36
Build 341122,600,654 - 22,603,963NCBI
Celera1122,777,941 - 22,781,250 (-)NCBICelera
Cytogenetic Map11p14.3NCBI
HuRef1122,327,266 - 22,330,575 (-)NCBIHuRef
CHM1_11122,643,695 - 22,647,004 (-)NCBICHM1_1
T2T-CHM13v2.01122,743,288 - 22,746,579 (-)NCBIT2T-CHM13v2.0
Fancf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39751,510,325 - 51,512,015 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl751,510,325 - 51,512,015 (-)EnsemblGRCm39 Ensembl
GRCm38751,860,577 - 51,862,267 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl751,860,577 - 51,862,267 (-)EnsemblGRCm38mm10GRCm38
MGSCv37759,115,947 - 59,117,637 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36759,115,947 - 59,117,624 (-)NCBIMGSCv36mm8
Celera749,233,676 - 49,235,406 (-)NCBICelera
Cytogenetic Map7B4NCBI
cM Map732.87NCBI
Fancf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554763,067,689 - 3,068,728 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554763,067,491 - 3,069,637 (-)NCBIChiLan1.0ChiLan1.0
FANCF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2924,912,428 - 24,915,178 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11124,876,586 - 24,881,158 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01122,634,301 - 22,637,885 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11122,542,426 - 22,546,147 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1122,544,052 - 22,545,176 (-)Ensemblpanpan1.1panPan2
FANCF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12144,253,308 - 44,256,221 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2144,255,134 - 44,256,618 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2143,728,664 - 43,731,582 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02145,370,190 - 45,373,442 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12144,370,738 - 44,373,650 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02144,542,654 - 44,545,584 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02144,935,521 - 44,938,442 (-)NCBIUU_Cfam_GSD_1.0
Fancf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494740,625,542 - 40,630,998 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366543,298,193 - 3,301,251 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FANCF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl236,884,777 - 36,885,856 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1236,884,701 - 36,886,661 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2240,095,250 - 40,097,471 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FANCF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,377,150 - 42,381,653 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,378,883 - 42,380,007 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038139,681,806 - 139,685,541 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fancf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476613,583,664 - 13,585,684 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fancf
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:79
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000032922
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)194494440117601394Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
61346Rf2Renal disease susceptibility QTL 23.7urine protein amount (VT:0005160)urine protein level (CMO:0000591)199267916144267916Rat
61399Tcat1Tongue tumor resistance QTL 13.3tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)199267916144267916Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
2317833Alcrsp19Alcohol response QTL 1912.40.001response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat
1641897Alcrsp1Alcohol response QTL 1response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1100979852145979852Rat

Markers in Region
RH143806  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21101,451,898 - 101,452,035 (+)MAPPERmRatBN7.2
Rnor_6.01107,232,281 - 107,232,417NCBIRnor6.0
Rnor_5.01108,274,090 - 108,274,226UniSTSRnor5.0
RGSC_v3.41101,666,577 - 101,666,713UniSTSRGSC3.4
Celera195,618,502 - 95,618,638UniSTS
RH 3.4 Map1940.4UniSTS
Cytogenetic Map1q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 3 43 57 41 19 41 8 11 74 35 41 11 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000032922   ⟹   ENSRNOP00000037022
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1101,450,389 - 101,451,923 (-)Ensembl
Rnor_6.0 Ensembl1107,231,292 - 107,232,305 (-)Ensembl
RefSeq Acc Id: NM_001401015   ⟹   NP_001387944
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81110,585,054 - 110,587,870 (-)NCBI
mRatBN7.21101,449,120 - 101,451,936 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387944 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037022.7
RefSeq Acc Id: ENSRNOP00000037022   ⟸   ENSRNOT00000032922
RefSeq Acc Id: NP_001387944   ⟸   NM_001401015
- UniProtKB: F1M0R6 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M0R6-F1-model_v2 AlphaFold F1M0R6 1-338 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690079
Promoter ID:EPDNEW_R604
Type:initiation region
Name:Fancf_1
Description:Fanconi anemia, complementation group F
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01107,232,297 - 107,232,357EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561456 AgrOrtholog
BioCyc Gene G2FUF-59533 BioCyc
Ensembl Genes ENSRNOG00000023968 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032922.7 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.490 UniProtKB/TrEMBL
InterPro FANCF UniProtKB/TrEMBL
  FANCF_C_sf UniProtKB/TrEMBL
NCBI Gene 499155 ENTREZGENE
PANTHER FANCONI ANEMIA GROUP F PROTEIN UniProtKB/TrEMBL
  PTHR14449 UniProtKB/TrEMBL
Pfam FANCF UniProtKB/TrEMBL
PhenoGen Fancf PhenoGen
RatGTEx ENSRNOG00000023968 RatGTEx
UniProt F1M0R6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-25 Fancf  FA complementation group F  Fancf  Fanconi anemia, complementation group F  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Fancf  Fanconi anemia, complementation group F  RGD1561456_predicted  similar to Fanconi anemia, complementation group F (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561456_predicted  similar to Fanconi anemia, complementation group F (predicted)  LOC499155  similar to Fanconi anemia, complementation group F  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499155  similar to Fanconi anemia, complementation group F      Symbol and Name status set to provisional 70820 PROVISIONAL