Zfp780b (zinc finger protein 780B) - Rat Genome Database

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Gene: Zfp780b (zinc finger protein 780B) Rattus norvegicus
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Symbol: Zfp780b
Name: zinc finger protein 780B
RGD ID: 1592570
Description: Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus; INTERACTS WITH 2-palmitoylglycerol (ortholog); 3-isobutyl-1-methyl-7H-xanthine (ortholog); 4,4'-sulfonyldiphenol (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AABR07002774.4; hypothetical protein LOC685578; hypothetical protein LOC687328; LOC102554136; LOC685578; similar to Zinc finger protein 354A (Transcription factor 17) (Renal transcription factor Kid-1) (Kidney, ischemia, and developmentally regulated protein 1); zinc finger protein 59; zinc finger protein 59-like; zinc finger protein 60; zinc finger protein 60-like; zinc finger protein 780A; zinc finger protein 780A-like
RGD Orthologs
Human
Bonobo
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Zfp780b-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,247,941 - 92,297,210 (+)NCBIGRCr8
mRatBN7.2183,058,993 - 83,182,629 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,009,189 - 83,082,107 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl183,094,305 - 83,140,793 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl183,160,399 - 83,183,254 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0184,755,811 - 84,763,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl184,685,931 - 84,698,793 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,872,434 - 85,930,098 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,961,675 - 82,982,450 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera177,560,251 - 77,583,716 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14760703  


Genomics

Comparative Map Data
Zfp780b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,247,941 - 92,297,210 (+)NCBIGRCr8
mRatBN7.2183,058,993 - 83,182,629 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl183,009,189 - 83,082,107 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl183,094,305 - 83,140,793 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl183,160,399 - 83,183,254 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0184,755,811 - 84,763,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl184,685,931 - 84,698,793 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,872,434 - 85,930,098 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,961,675 - 82,982,450 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera177,560,251 - 77,583,716 (+)NCBICelera
Cytogenetic Map1q21NCBI
KRBOX5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381631,713,244 - 31,761,565 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1631,713,229 - 31,794,869 (+)EnsemblGRCh38hg38GRCh38
GRCh371631,724,565 - 31,772,886 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16p11.2NCBI
HuRef1629,284,962 - 29,333,281 (+)NCBIHuRef
CHM1_11633,043,199 - 33,091,522 (+)NCBICHM1_1
T2T-CHM13v2.01632,100,634 - 32,148,944 (+)NCBIT2T-CHM13v2.0
KRBOX5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21835,032,838 - 35,097,299 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11639,956,050 - 40,015,419 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01623,022,849 - 23,140,123 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11612,218,130 - 12,225,106 (+)NCBIpanpan1.1PanPan1.1panPan2

Variants

.
Variants in Zfp780b
989 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:57
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000063839
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)15034351099980958Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000032933   ⟹   ENSRNOP00000037471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,059,010 - 83,082,107 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000041861   ⟹   ENSRNOP00000046702
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,094,305 - 83,137,431 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000063839   ⟹   ENSRNOP00000062020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,160,399 - 83,183,254 (+)Ensembl
Rnor_6.0 Ensembl184,685,931 - 84,698,793 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000073966   ⟹   ENSRNOP00000065360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,009,191 - 83,027,748 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101873   ⟹   ENSRNOP00000086019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,009,189 - 83,082,107 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102346   ⟹   ENSRNOP00000083598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,160,448 - 83,183,254 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112009   ⟹   ENSRNOP00000097737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,009,189 - 83,027,748 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113399   ⟹   ENSRNOP00000079191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,160,399 - 83,183,254 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115669   ⟹   ENSRNOP00000078742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,094,305 - 83,140,793 (+)Ensembl
RefSeq Acc Id: XM_039100844   ⟹   XP_038956772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,247,942 - 92,269,045 (+)NCBI
mRatBN7.2183,098,948 - 83,141,462 (+)NCBI
RefSeq Acc Id: XM_063277703   ⟹   XP_063133773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,247,941 - 92,269,045 (+)NCBI
RefSeq Acc Id: XM_063277705   ⟹   XP_063133775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,247,941 - 92,274,432 (+)NCBI
RefSeq Acc Id: XM_063277707   ⟹   XP_063133777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,247,941 - 92,297,210 (+)NCBI
RefSeq Acc Id: XM_063277708   ⟹   XP_063133778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8192,247,941 - 92,297,210 (+)NCBI
Ensembl Acc Id: ENSRNOP00000062020   ⟸   ENSRNOT00000063839
RefSeq Acc Id: XP_038956772   ⟸   XM_039100844
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000079191   ⟸   ENSRNOT00000113399
Ensembl Acc Id: ENSRNOP00000083598   ⟸   ENSRNOT00000102346
Ensembl Acc Id: ENSRNOP00000097737   ⟸   ENSRNOT00000112009
Ensembl Acc Id: ENSRNOP00000078742   ⟸   ENSRNOT00000115669
Ensembl Acc Id: ENSRNOP00000046702   ⟸   ENSRNOT00000041861
Ensembl Acc Id: ENSRNOP00000037471   ⟸   ENSRNOT00000032933
Ensembl Acc Id: ENSRNOP00000065360   ⟸   ENSRNOT00000073966
Ensembl Acc Id: ENSRNOP00000086019   ⟸   ENSRNOT00000101873
RefSeq Acc Id: XP_063133777   ⟸   XM_063277707
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063133778   ⟸   XM_063277708
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063133775   ⟸   XM_063277705
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063133773   ⟸   XM_063277703
- Peptide Label: isoform X2
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZLR0-F1-model_v2 AlphaFold D3ZLR0 1-251 view protein structure
AF-D3ZR88-F1-model_v2 AlphaFold D3ZR88 1-624 view protein structure
AF-D3ZA43-F1-model_v2 AlphaFold D3ZA43 1-761 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1592570 AgrOrtholog
Ensembl Genes ENSRNOG00000018885 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000029805 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000050995 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041861.4 UniProtKB/TrEMBL
  ENSRNOT00000063839.4 UniProtKB/TrEMBL
  ENSRNOT00000101873.1 UniProtKB/TrEMBL
  ENSRNOT00000102346.1 UniProtKB/TrEMBL
  ENSRNOT00000113399.1 UniProtKB/TrEMBL
  ENSRNOT00000115669.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro C2H2-ZF_domain UniProtKB/TrEMBL
  KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Zinc_finger UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zfp780b ENTREZGENE
PANTHER FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED UniProtKB/TrEMBL
  PR DOMAIN ZINC FINGER PROTEIN UniProtKB/TrEMBL
  SI:DKEY-15H8.11 PROTEIN-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 17 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 142 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 711 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 771 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp780b PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018885 RatGTEx
  ENSRNOG00000029805 RatGTEx
  ENSRNOG00000050995 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZLT8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZMF7_RAT UniProtKB/TrEMBL
  A0A8I6GAY4_RAT UniProtKB/TrEMBL
  A0A8I6GEI7_RAT UniProtKB/TrEMBL
  D3ZA43_RAT UniProtKB/TrEMBL
  D3ZLR0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Zfp780b  zinc finger protein 780B  AABR07002774.4    Data merged from RGD:15006091 737654 PROVISIONAL
2021-03-09 Zfp780b  zinc finger protein 780B  LOC102554136  zinc finger protein 60-like  Data merged from RGD:7646794 737654 PROVISIONAL
2019-11-08 AABR07002774.4        Symbol and Name status set to provisional 45752 PROVISIONAL
2013-12-18 LOC102554136  zinc finger protein 60-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-05-24 Zfp780b  zinc finger protein 780B  LOC687328  hypothetical protein LOC687328  Data merged from RGD:1586569 1643240 APPROVED
2012-07-02 Zfp780b  zinc finger protein 780B  LOC499110  similar to Zinc finger protein 354A (Transcription factor 17) (Renal transcription factor Kid-1) (Kidney, ischemia, and developmentally regulated protein 1)  Data merged from RGD:1583738 1643240 APPROVED
2010-04-21 Zfp780b  zinc finger protein 780B  LOC685578  hypothetical protein LOC685578  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685578  hypothetical protein LOC685578      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC499110  similar to Zinc finger protein 354A (Transcription factor 17) (Renal transcription factor Kid-1) (Kidney, ischemia, and developmentally regulated protein 1)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687328  hypothetical protein LOC687328      Symbol and Name status set to provisional 70820 PROVISIONAL