Lmtk3 (lemur tyrosine kinase 3) - Rat Genome Database

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Gene: Lmtk3 (lemur tyrosine kinase 3) Rattus norvegicus
Analyze
Symbol: Lmtk3
Name: lemur tyrosine kinase 3
RGD ID: 1588641
Description: Predicted to enable ATP binding activity and protein kinase activity. Predicted to be involved in protein phosphorylation. Predicted to be located in membrane. Orthologous to human LMTK3 (lemur tyrosine kinase 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 3,4-methylenedioxymethamphetamine (ortholog); 4,4'-sulfonyldiphenol (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AC095693.1; LOC691056; serine/threonine-protein kinase LMTK3; similar to 5E5 antigen
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,397,504 - 105,417,146 (+)NCBIGRCr8
mRatBN7.2196,261,058 - 96,280,362 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl196,260,977 - 96,280,672 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01101,773,206 - 101,792,420 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,783,621 - 101,792,496 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01102,852,278 - 102,871,879 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,264,104 - 96,280,856 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera190,515,504 - 90,532,812 (+)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
epilepsy  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19389623  


Genomics

Comparative Map Data
Lmtk3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,397,504 - 105,417,146 (+)NCBIGRCr8
mRatBN7.2196,261,058 - 96,280,362 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl196,260,977 - 96,280,672 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01101,773,206 - 101,792,420 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,783,621 - 101,792,496 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01102,852,278 - 102,871,879 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,264,104 - 96,280,856 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera190,515,504 - 90,532,812 (+)NCBICelera
Cytogenetic Map1q22NCBI
LMTK3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381948,485,271 - 48,513,680 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1948,485,271 - 48,513,935 (-)EnsemblGRCh38hg38GRCh38
GRCh371948,988,528 - 49,016,419 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,680,340 - 53,708,258 (-)NCBINCBI36Build 36hg18NCBI36
Celera1945,853,763 - 45,881,680 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,368,681 - 45,396,172 (-)NCBIHuRef
CHM1_11948,990,233 - 49,018,294 (-)NCBICHM1_1
T2T-CHM13v2.01951,479,429 - 51,507,322 (-)NCBIT2T-CHM13v2.0
Lmtk3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,432,577 - 45,456,315 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,433,162 - 45,453,568 (+)EnsemblGRCm39 Ensembl
GRCm38745,783,134 - 45,804,144 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,783,738 - 45,804,144 (+)EnsemblGRCm38mm10GRCm38
MGSCv37753,039,317 - 53,059,500 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,653,422 - 45,672,186 (+)NCBIMGSCv36mm8
Celera741,248,006 - 41,268,262 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.5NCBI
Lmtk3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,992,942 - 2,011,578 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,994,851 - 2,011,578 (+)NCBIChiLan1.0ChiLan1.0
LMTK3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22054,590,589 - 54,618,881 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11956,516,917 - 56,545,201 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01945,486,885 - 45,515,156 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11954,078,731 - 54,107,494 (-)NCBIpanpan1.1PanPan1.1panPan2
LMTK3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,771,420 - 107,791,090 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,291,649 - 107,312,428 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,294,726 - 108,315,527 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1108,295,801 - 108,315,974 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,960,866 - 107,981,652 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,608,191 - 107,628,967 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,444,048 - 108,464,826 (+)NCBIUU_Cfam_GSD_1.0
Lmtk3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934920,960,695 - 20,981,810 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366642,579,250 - 2,599,990 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366642,579,204 - 2,598,189 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMTK3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,882,529 - 53,904,943 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,883,309 - 53,905,211 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,513,647 - 49,535,434 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LMTK3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,746,973 - 41,775,136 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl641,753,247 - 41,772,822 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607321,531,337 - 21,560,576 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmtk3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248325,313,694 - 5,332,985 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248325,315,204 - 5,332,168 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lmtk3
29 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)194494440117601394Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)15034351099980958Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000067679   ⟹   ENSRNOP00000061430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl196,260,977 - 96,280,672 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118878   ⟹   ENSRNOP00000081226
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl196,260,977 - 96,280,672 (+)Ensembl
RefSeq Acc Id: XM_008759459   ⟹   XP_008757681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81105,397,564 - 105,417,146 (+)NCBI
mRatBN7.2196,261,118 - 96,280,362 (+)NCBI
Rnor_6.01101,773,206 - 101,792,420 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039100951   ⟹   XP_038956879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81105,397,564 - 105,417,146 (+)NCBI
mRatBN7.2196,261,118 - 96,280,362 (+)NCBI
RefSeq Acc Id: XM_039100952   ⟹   XP_038956880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81105,399,081 - 105,417,146 (+)NCBI
mRatBN7.2196,262,501 - 96,280,362 (+)NCBI
RefSeq Acc Id: XM_039100953   ⟹   XP_038956881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81105,398,015 - 105,417,146 (+)NCBI
mRatBN7.2196,261,568 - 96,280,362 (+)NCBI
RefSeq Acc Id: XM_039100954   ⟹   XP_038956882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81105,397,504 - 105,417,146 (+)NCBI
mRatBN7.2196,261,058 - 96,280,362 (+)NCBI
RefSeq Acc Id: XP_008757681   ⟸   XM_008759459
- Peptide Label: isoform X2
- UniProtKB: F1LSB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038956882   ⟸   XM_039100954
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038956879   ⟸   XM_039100951
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038956881   ⟸   XM_039100953
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038956880   ⟸   XM_039100952
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000081226   ⟸   ENSRNOT00000118878
Ensembl Acc Id: ENSRNOP00000061430   ⟸   ENSRNOT00000067679
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LSB5-F1-model_v2 AlphaFold F1LSB5 1-707 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588641 AgrOrtholog
BioCyc Gene G2FUF-59647 BioCyc
Ensembl Genes ENSRNOG00000021048 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067679.4 UniProtKB/TrEMBL
  ENSRNOT00000118878.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
  Tyr_kinase_AS UniProtKB/TrEMBL
KEGG Report rno:691056 UniProtKB/TrEMBL
NCBI Gene 691056 ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE LMTK1 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE LMTK3 UniProtKB/TrEMBL
Pfam PK_Tyr_Ser-Thr UniProtKB/TrEMBL
PhenoGen Lmtk3 PhenoGen
PRINTS TYRKINASE UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_TYR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000021048 RatGTEx
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A8I5ZR67_RAT UniProtKB/TrEMBL
  F1LSB5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Lmtk3  lemur tyrosine kinase 3  AC095693.1    Data merged from RGD:15003501 737654 PROVISIONAL
2019-11-08 AC095693.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2015-12-21 Lmtk3  lemur tyrosine kinase 3  LOC691056  similar to 5E5 antigen  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC691056  similar to 5E5 antigen      Symbol and Name status set to provisional 70820 PROVISIONAL