Dmkn (dermokine) - Rat Genome Database

Name: Dmkn
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Dmkn (dermokine) Rattus norvegicus

Analyze

Symbol:

Dmkn

Name:

dermokine

RGD ID:

1561521

Description:

Predicted to act upstream of or within cornified envelope assembly. Predicted to be located in extracellular space. Orthologous to human DMKN (dermokine); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; benzo[a]pyrene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

dermokine-like; LOC100912070; LOC361548; RGD1561521; similar to 1110014F24Rik protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DMKN (dermokine)	HGNC	Ensembl, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Dmkn (dermokine)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dmkn (dermokine)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DMKN (dermokine)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DMKN (dermokine)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dmkn (dermokine)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DMKN (dermokine)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DMKN (dermokine)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dmkn (dermokine)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Dmkn (dermokine)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DMKN (dermokine)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	95,140,737 - 95,158,676 (+)	NCBI		GRCr8
mRatBN7.2	1	86,013,237 - 86,031,243 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	86,014,188 - 86,030,006 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	91,429,795 - 91,446,813 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,895,970 - 99,912,983 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	93,188,092 - 93,205,104 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	89,215,266 - 89,229,696 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	89,215,266 - 89,229,696 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	90,369,376 - 90,386,137 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,811,409 - 85,828,800 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	80,385,576 - 80,402,667 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brugada syndrome 5 (ISO)

dystonia (ISO)

genetic disease (ISO)

hereditary spastic paraplegia 75 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP,ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (EXP,ISO)

bilirubin IXalpha (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

calcitriol (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

diiodine (ISO)

dorsomorphin (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

fulvestrant (ISO)

genistein (ISO)

gentamycin (EXP)

indometacin (ISO)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

methamphetamine (EXP)

methyl methanesulfonate (ISO)

N,N-diethyl-m-toluamide (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

pirinixic acid (ISO)

propanal (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

SCH 23390 (EXP)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

sulforaphane (ISO)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

tris(2-butoxyethyl) phosphate (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cornified envelope assembly (IBA,ISO)

Cellular Component

extracellular space (IBA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15256262	PMID:23376485	PMID:24794495

Genomics

Comparative Map Data

Dmkn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	95,140,737 - 95,158,676 (+)	NCBI		GRCr8
mRatBN7.2	1	86,013,237 - 86,031,243 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	86,014,188 - 86,030,006 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	91,429,795 - 91,446,813 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,895,970 - 99,912,983 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	93,188,092 - 93,205,104 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	89,215,266 - 89,229,696 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	89,215,266 - 89,229,696 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	90,369,376 - 90,386,137 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,811,409 - 85,828,800 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	80,385,576 - 80,402,667 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

DMKN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	35,497,220 - 35,513,649 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	35,497,220 - 35,513,658 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	35,988,122 - 36,004,551 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	40,679,962 - 40,696,394 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	32,701,640 - 32,718,078 (-)	NCBI		Celera
Cytogenetic Map	19	q13.12	NCBI
HuRef	19	32,493,638 - 32,510,025 (-)	NCBI		HuRef
CHM1_1	19	35,989,744 - 36,006,129 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	38,041,938 - 38,058,366 (-)	NCBI		T2T-CHM13v2.0

Dmkn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	30,463,181 - 30,480,491 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	30,463,181 - 30,480,488 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	30,763,756 - 30,781,066 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	30,763,756 - 30,781,063 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	31,548,775 - 31,566,085 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	30,472,523 - 30,489,818 (+)	NCBI		MGSCv36	mm8
Celera	7	25,346,863 - 25,363,866 (+)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	19.24	NCBI

Dmkn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955468	4,724,652 - 4,738,556 (-)	NCBI	ChiLan1.0	ChiLan1.0

DMKN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	41,510,116 - 41,527,419 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	43,493,479 - 43,509,945 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	32,443,920 - 32,460,473 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	41,180,079 - 41,196,614 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

DMKN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	117,144,605 - 117,158,116 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	117,144,627 - 117,158,027 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	116,547,466 - 116,560,976 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	117,744,222 - 117,757,759 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	117,307,613 - 117,321,100 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	116,932,917 - 116,946,418 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	117,988,259 - 118,001,792 (+)	NCBI		UU_Cfam_GSD_1.0

Dmkn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	10,786,136 - 10,799,794 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	846,146 - 859,759 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	846,229 - 859,732 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DMKN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	44,942,782 - 44,955,105 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	44,942,067 - 44,957,192 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	40,228,367 - 40,243,498 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DMKN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	30,422,404 - 30,440,481 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	30,423,901 - 30,438,808 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	8,214,789 - 8,231,458 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dmkn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	8,087,442 - 8,100,802 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Dmkn
108 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	50
Count of miRNA genes:	49
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000040607
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	72197680	90508767	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	77494165	122494165	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	77857876	122857876	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	77876254	106047988	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	78350581	123350581	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	78430536	123430536	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	78430754	91209302	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	78479925	123479925	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	80592172	125592172	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	82174743	118944897	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)	1	83547917	128547917	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	85424647	100358001	Rat

Markers in Region

D1Got87

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	86,030,510 - 86,030,749 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	91,156,565 - 91,156,803	NCBI	Rnor6.0
Rnor_6.0	1	89,228,970 - 89,229,208	NCBI	Rnor6.0
Rnor_5.0	1	92,291,247 - 92,291,485	UniSTS	Rnor5.0
Rnor_5.0	1	90,385,411 - 90,385,649	UniSTS	Rnor5.0
RGSC_v3.4	1	85,828,067 - 85,828,306	RGD	RGSC3.4
RGSC_v3.4	1	85,828,068 - 85,828,306	UniSTS	RGSC3.4
RGSC_v3.1	1	85,906,179 - 85,906,417	RGD
Celera	1	80,401,941 - 80,402,179	UniSTS
RH 3.4 Map	1	844.0	UniSTS
RH 3.4 Map	1	844.0	RGD
RH 2.0 Map	1	559.7	RGD
Cytogenetic Map	1	q21	UniSTS

RH130107

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	86,030,949 - 86,031,169 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	91,157,004 - 91,157,223	NCBI	Rnor6.0
Rnor_6.0	1	89,229,409 - 89,229,628	NCBI	Rnor6.0
Rnor_5.0	1	92,291,686 - 92,291,905	UniSTS	Rnor5.0
Rnor_5.0	1	90,385,850 - 90,386,069	UniSTS	Rnor5.0
RGSC_v3.4	1	85,828,507 - 85,828,726	UniSTS	RGSC3.4
Celera	1	80,402,380 - 80,402,599	UniSTS
RH 3.4 Map	1	844.0	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium											2	4
Low		18	4	2	1	2	1	1	26		18	3	1
Below cutoff	3	14	27	15	7	15			48	14	14	2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001173357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000073438 ⟹ ENSRNOP00000066127

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	91,152,635 - 91,156,060 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000084799 ⟹ ENSRNOP00000072810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	86,014,188 - 86,030,006 (+)	Ensembl
Rnor_6.0 Ensembl	1	89,215,382 - 89,228,465 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093144 ⟹ ENSRNOP00000076204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	86,014,188 - 86,029,280 (+)	Ensembl
Rnor_6.0 Ensembl	1	89,220,083 - 89,229,696 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000093612 ⟹ ENSRNOP00000076175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	86,014,188 - 86,030,006 (+)	Ensembl
Rnor_6.0 Ensembl	1	89,215,266 - 89,217,859 (+)	Ensembl

RefSeq Acc Id:

NM_001173357 ⟹ NP_001166828

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	95,141,620 - 95,158,670 (+)	NCBI
mRatBN7.2	1	86,014,188 - 86,031,237 (+)	NCBI
Rnor_6.0	1	89,215,266 - 89,229,696 (+)	NCBI
Rnor_5.0	1	90,369,376 - 90,386,137 (+)	NCBI
Celera	1	80,385,576 - 80,402,667 (+)	NCBI

Sequence:

show sequence

GGGGAAGGGAGAATAGGAAGCAAGGAGGGAAAGGCAGGTCTCAGCCCAGAGGAAGAGAAGGGAA
CAAGTGGACTGGGCTGCAGAGATTCTCAGGGGAGAGAGGGAGCTGGGCAGAGATGAAGCCACAA
GGGTCTCTGGCCTGTCTCCTGCTGGCCCTATGTCTGGGCAGCGGGGTAGCTAATCCGCTGCACA
GCGGAGGGGAGGGCACAGGGGCAAATGCTGCCCCCGGAATGGGAGGTACCATTAGCCATGGAAT
TGGAGAGTCTGTGGGCCAAGGGGCTAAAGAAGCAGCCAGCTCTGGAATCCAGGATGCCCTGGGT
CAGGGGCACGGCGAAGGTGGCTACGCACTGATGGGGGGCAGAGGCGATGTTTTCGACCACCAGC
TTGGGGAGGCAGCTCGATCTCTGGAGAACGCTGGGAATGAGATTGGCAGACGGGCTGAGGATGT
TATTCGCAGAGGGGTAGACGCTGCCCACAACTCTGGGTCCTGGGGGACATCTGGAGGTCATGGC
GTGTATGGCTCTCAAGGTGGTTTTGGAAGCCAGGGCAATCCTGGTGTTGAAGGGACACCCTGGG
CCTCAGGAGGCAACTATGGAACTAACTCTCTGGGTGGCTCTGTGGGTCAGGGTGGCAGTGGCAG
GCCGCTCAACTATGAAACCAATGCCCAGGGGGCTGTGGCTCAGCCTGGCTATGGAGCAGTGAGA
GGCAACAACCAGAATTCAGGGTGTACCAACCCCCCACCTTCTGACTCCCACGAAAGCTTCAGCG
ACTCTGGGGGAAGCAGCAATGGCGGCAGTCATGGTGGCCAAGGCAACCAAGGCAGCAATGGTCA
GGGCAACAGCGGCGGTAACAGCGGCCAAGGCAGCAGTGGCAGCAGTGGCAACAGTGGCAACAAC
GAGGGCAGCGGTGGCCACAGTGGTAACAGCGGCGGCAACAGCGGTTCTGGGTCCCGGGACCTGG
AAACGTCTAATTTTGATGATGGCTATTCAGTTTCCAGGGGAACTAGCTCATCCTCCGGCAGCAG
AGGTGGTAGTGGTGGTGGTGGAAACAGACCCGAGTGTAACAACCCAGGGAATGACGTGCGCATG
GCTGGAGGATCTGGGAGTCAGGAAAGTAAAGAAAGCAGCCATCTCCTTGGAGGCTCCCATGACT
ACCAGGGGCACGGGTCCGGGCACGGGTCCAATGGTGGCAATGTACAAAGAGATGCTGTCAGTGG
ACTCAACACCATGAACTCCGATGCATCTTCCTTGCCTTTCAACTTGGACAATTTCTGGGAGAAT
TTTAAATCCAAGATGGGTTTCATTAACTGGGATGCCATAAACAAGGGTCGAGGCCCGGCTCCCA
GCACTCGTGCCTTACTCTACTTCCGCAGACTGTGGGAGAATTTCAAACGCAACACTCCTTTCTT
CAACTGGAAACAGATTGAGGGCTCAGATCTGTCATCTCTGCAGAAGAGGGCAGGTGGTGCTGAC
CAGTTTTCTCAGCCGGAAGCAGCAAGACAAGATCTGTCAGCTGAGTCAGCCAAGAACTACTACA
ACAACGCCCAGGTGAATCCTACTTACAACTGGCAATACTATACCAAGACCACCCCCAAGGCGGG
AGTCACACCTTCATCCTCGGCTTCCCGGGCACAACCTGGCCTGCTGAAGTGGCTGAAGTTTTGG
TAGAACATTCCATCTGGTCCCAGCCGACTCCTCCTGAAAGTAGGCAGGTCTTCAGGGAGCTTGA
CTGTCCTTACCCACAGTCCTCTCTGATGCGGCTGACCTACCTGGGCATTCCATGCCTGTCATCT
CACCTGGGGACCTGGTTTATCTGTCCTCATCCTCCCTGTTTGACTGTAGTGTCTTCGAGACTAA
TCAGCTTCGTTGGATAACCAGCCAGCTCTTCAGCTCTTCTTCTATATGTGAGCGGAAGTCCCCA
GAAGGACGCAGCAGGAATTCCTACTCTCAAGTTTCTCTGTGGAAATAAAACATGATTCTTTGTT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039081975 ⟹ XP_038937903

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	95,140,740 - 95,158,676 (+)	NCBI
mRatBN7.2	1	86,013,240 - 86,031,243 (+)	NCBI

RefSeq Acc Id:

XM_039081986 ⟹ XP_038937914

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	95,153,728 - 95,158,676 (+)	NCBI
mRatBN7.2	1	86,026,296 - 86,031,243 (+)	NCBI

RefSeq Acc Id:

XM_063266496 ⟹ XP_063122566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	95,140,737 - 95,158,676 (+)	NCBI

RefSeq Acc Id:

XM_063266497 ⟹ XP_063122567

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	95,140,738 - 95,158,676 (+)	NCBI

RefSeq Acc Id:

XM_063266498 ⟹ XP_063122568

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	95,153,725 - 95,158,676 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001166828	(Get FASTA)	NCBI Sequence Viewer
	XP_038937903	(Get FASTA)	NCBI Sequence Viewer
	XP_038937914	(Get FASTA)	NCBI Sequence Viewer
	XP_063122566	(Get FASTA)	NCBI Sequence Viewer
	XP_063122567	(Get FASTA)	NCBI Sequence Viewer
	XP_063122568	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66816	(Get FASTA)	NCBI Sequence Viewer
	EDM07711	(Get FASTA)	NCBI Sequence Viewer
	EDM07712	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072810
	ENSRNOP00000072810.2
	ENSRNOP00000076175
	ENSRNOP00000076175.2
	ENSRNOP00000076204.2

RefSeq Acc Id:	NP_001166828 ⟸ NM_001173357
- Peptide Label:	precursor
- UniProtKB:	B2RYK9 (UniProtKB/TrEMBL), A0A1W2Q687 (UniProtKB/TrEMBL), A6JA22 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKPQGSLACLLLALCLGSGVANPLHSGGEGTGANAAPGMGGTISHGIGESVGQGAKEAASSGIQ DALGQGHGEGGYALMGGRGDVFDHQLGEAARSLENAGNEIGRRAEDVIRRGVDAAHNSGSWGTS GGHGVYGSQGGFGSQGNPGVEGTPWASGGNYGTNSLGGSVGQGGSGRPLNYETNAQGAVAQPGY GAVRGNNQNSGCTNPPPSDSHESFSDSGGSSNGGSHGGQGNQGSNGQGNSGGNSGQGSSGSSGN SGNNEGSGGHSGNSGGNSGSGSRDLETSNFDDGYSVSRGTSSSSGSRGGSGGGGNRPECNNPGN DVRMAGGSGSQESKESSHLLGGSHDYQGHGSGHGSNGGNVQRDAVSGLNTMNSDASSLPFNLDN FWENFKSKMGFINWDAINKGRGPAPSTRALLYFRRLWENFKRNTPFFNWKQIEGSDLSSLQKRA GGADQFSQPEAARQDLSAESAKNYYNNAQVNPTYNWQYYTKTTPKAGVTPSSSASRAQPGLLKW LKFW hide sequence

RefSeq Acc Id:

ENSRNOP00000072810 ⟸ ENSRNOT00000084799

RefSeq Acc Id:

ENSRNOP00000076175 ⟸ ENSRNOT00000093612

RefSeq Acc Id:

ENSRNOP00000076204 ⟸ ENSRNOT00000093144

RefSeq Acc Id:	XP_038937903 ⟸ XM_039081975
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K3X0 (UniProtKB/TrEMBL), A6JA22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937914 ⟸ XM_039081986
- Peptide Label:	isoform X3
- UniProtKB:	A6JA23 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000066127 ⟸ ENSRNOT00000073438

RefSeq Acc Id:	XP_063122566 ⟸ XM_063266496
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063122567 ⟸ XM_063266497
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063122568 ⟸ XM_063266498
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R9F9-F1-model_v2	AlphaFold	M0R9F9	1-105	view protein structure
AF-A0A0G2K3X0-F1-model_v2	AlphaFold	A0A0G2K3X0	1-517	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689938

Promoter ID:

EPDNEW_R457

Type:

single initiation site

Name:

Dmkn_1

Description:

dermokine

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	89,215,227 - 89,215,287	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1561521	AgrOrtholog
BioCyc Gene	G2FUF-60078	BioCyc
Ensembl Genes	ENSRNOG00000048407	Ensembl
	ENSRNOG00000055934	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000084799.2	UniProtKB/TrEMBL
	ENSRNOT00000093144.2	UniProtKB/TrEMBL
	ENSRNOT00000093612	ENTREZGENE
	ENSRNOT00000093612.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7462729	IMAGE-MGC_LOAD
InterPro	Dermokine	UniProtKB/TrEMBL
KEGG Report	rno:361548	UniProtKB/TrEMBL
MGC_CLONE	MGC:188672	IMAGE-MGC_LOAD
NCBI Gene	361548	ENTREZGENE
PANTHER	DERMOKINE	UniProtKB/TrEMBL
	PTHR36881	UniProtKB/TrEMBL
PhenoGen	Dmkn	PhenoGen
RatGTEx	ENSRNOG00000048407	RatGTEx
	ENSRNOG00000055934	RatGTEx
UniProt	A0A0G2K3X0	ENTREZGENE, UniProtKB/TrEMBL
	A0A1W2Q687	ENTREZGENE
	A0A1W2Q6C1_RAT	UniProtKB/TrEMBL
	A6JA22	ENTREZGENE, UniProtKB/TrEMBL
	A6JA23	ENTREZGENE, UniProtKB/TrEMBL
	B2RYK9	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A1W2Q687	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Dmkn	dermokine	LOC100912070	dermokine-like	Data merged from RGD:6488970	737654	PROVISIONAL
2012-07-05	LOC100912070	dermokine-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-02-29	Dmkn	dermokine	RGD1561521_predicted	similar to 1110014F24Rik protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1561521_predicted	similar to 1110014F24Rik protein (predicted)	LOC361548	similar to 1110014F24Rik protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC361548	similar to 1110014F24Rik protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar