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Gene: Scaf1 (SR-related CTD-associated factor 1) Rattus norvegicus
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Symbol: Scaf1
Name: SR-related CTD-associated factor 1
Description: Exhibits protein domain specific binding activity. Involved in mRNA processing and transcription by RNA polymerase II. Predicted to localize to the nucleus. Orthologous to human SCAF1 (SR-related CTD associated factor 1); INTERACTS WITH 3H-1,2-dithiole-3-thione; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: CTD-binding SR-like protein rA1; CTD-binding SR-like rA1; LOC56081; serine arginine-rich pre-mRNA splicing factor SR-A1; splicing factor, arginine/serine-rich 19; Sr-a1; SR-related and CTD-associated factor 1
Orthologs:
Homo sapiens (human) : SCAF1 (SR-related CTD associated factor 1)  HGNC  Alliance
Mus musculus (house mouse) : Scaf1 (SR-related CTD-associated factor 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Scaf1 (SR-related CTD associated factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SCAF1 (SR-related CTD associated factor 1)
Canis lupus familiaris (dog) : SCAF1 (SR-related CTD associated factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Scaf1 (SR-related CTD associated factor 1)
Sus scrofa (pig) : SCAF1 (SR-related CTD associated factor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01100,997,724 - 101,010,855 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,997,745 - 101,008,266 (-)Ensembl
Rnor_5.01102,062,327 - 102,076,108 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,475,611 - 95,485,819 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1195,553,721 - 95,563,930 (-)NCBI
Celera189,746,782 - 89,757,007 (-)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Scaf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 708405
Created: 2003-09-23
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.