Znf568l-ps1 (zinc finger protein 568 like, pseudogene 1) - Rat Genome Database

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Gene: Znf568l-ps1 (zinc finger protein 568 like, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Znf568l-ps1
Name: zinc finger protein 568 like, pseudogene 1
RGD ID: 1559509
Description: Orthologous to human ZNF568 (zinc finger protein 568); INTERACTS WITH ammonium chloride; bisphenol A; N-nitrosodiethylamine.
Type: pseudo
RefSeq Status: INFERRED
Previously known as: Zfp569; zinc finger protein 16; zinc finger protein 568; zinc finger protein 569
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,357,203 - 94,358,600 (+)NCBIGRCr8
mRatBN7.2185,229,794 - 85,231,191 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0187,886,409 - 87,889,357 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0189,468,434 - 89,472,490 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,006,869 - 85,017,880 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,602,381 - 79,605,329 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 22 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Znf568l-ps1Ratacrylamide increases expressionISOZNF568 (Homo sapiens)6480464Acrylamide results in increased expression of ZNF568 mRNACTDPMID:32763439
Znf568l-ps1Rataflatoxin B1 decreases methylationISOZNF568 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of ZNF568 geneCTDPMID:27153756
Znf568l-ps1RatAflatoxin B2 alpha decreases methylationISOZNF568 (Homo sapiens)6480464aflatoxin B2 results in decreased methylation of ZNF568 promoterCTDPMID:30157460
Znf568l-ps1Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of ZNF568L-PS1 mRNACTDPMID:16483693
Znf568l-ps1Ratbenzo[a]pyrene decreases expressionISOZNF568 (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of ZNF568 mRNACTDPMID:22316170
Znf568l-ps1Ratbenzo[a]pyrene decreases methylationISOZNF568 (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of ZNF568 5' UTR and Benzo(a)pyrene results in decreased methylation of ZNF568 promoterCTDPMID:27901495
Znf568l-ps1Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of ZNF568L-PS1 mRNACTDPMID:25181051
Znf568l-ps1Ratbisphenol A multiple interactionsISOZNF568 (Homo sapiens)6480464[bisphenol A co-treated with Fulvestrant] results in increased methylation of ZNF568 geneCTDPMID:31601247
Znf568l-ps1Ratbisphenol A increases methylationISOZNF568 (Homo sapiens)6480464bisphenol A results in increased methylation of ZNF568 geneCTDPMID:31601247
Znf568l-ps1Ratbutanal increases expressionISOZNF568 (Homo sapiens)6480464butyraldehyde results in increased expression of ZNF568 mRNACTDPMID:26079696
Znf568l-ps1Ratcadmium atom increases expressionISOZNF568 (Homo sapiens)6480464Cadmium results in increased expression of ZNF568 mRNACTDPMID:23369406
Znf568l-ps1Ratfulvestrant multiple interactionsISOZNF568 (Homo sapiens)6480464[bisphenol A co-treated with Fulvestrant] results in increased methylation of ZNF568 geneCTDPMID:31601247
Znf568l-ps1RatN-nitrosodiethylamine increases expressionEXP 6480464Diethylnitrosamine results in increased expression of ZNF568L-PS1 mRNACTDPMID:20360939
Znf568l-ps1Ratparacetamol increases expressionISOZNF568 (Homo sapiens)6480464Acetaminophen results in increased expression of ZNF568 mRNACTDPMID:26690555
Znf568l-ps1Ratpropanal decreases expressionISOZNF568 (Homo sapiens)6480464propionaldehyde results in decreased expression of ZNF568 mRNACTDPMID:26079696
Znf568l-ps1Ratsilicon dioxide decreases expressionISOZNF568 (Homo sapiens)6480464Silicon Dioxide analog results in decreased expression of ZNF568 mRNACTDPMID:23806026
Znf568l-ps1Ratsodium arsenite increases expressionISOZNF568 (Homo sapiens)6480464sodium arsenite results in increased expression of ZNF568 mRNACTDPMID:38568856
Znf568l-ps1Ratsodium arsenite decreases expressionISOZNF568 (Homo sapiens)6480464sodium arsenite results in decreased expression of ZNF568 mRNACTDPMID:34032870
Znf568l-ps1Ratsunitinib increases expressionISOZNF568 (Homo sapiens)6480464Sunitinib results in increased expression of ZNF568 mRNACTDPMID:31533062
Znf568l-ps1Rattebuconazole decreases expressionISOZNF568 (Homo sapiens)6480464tebuconazole results in decreased expression of ZNF568 mRNACTDPMID:30458266

1 to 20 of 22 rows

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Reference Title
Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8697448  



Znf568l-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,357,203 - 94,358,600 (+)NCBIGRCr8
mRatBN7.2185,229,794 - 85,231,191 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0187,886,409 - 87,889,357 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0189,468,434 - 89,472,490 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,006,869 - 85,017,880 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,602,381 - 79,605,329 (+)NCBICelera
Cytogenetic Map1q21NCBI
ZNF568
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381936,916,332 - 36,997,932 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1936,916,316 - 37,005,037 (+)EnsemblGRCh38hg38GRCh38
GRCh371937,407,234 - 37,488,834 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361942,099,074 - 42,134,290 (+)NCBINCBI36Build 36hg18NCBI36
Build 341942,099,084 - 42,135,483NCBI
Celera1934,191,526 - 34,226,724 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1933,876,317 - 33,958,032 (+)NCBIHuRef
CHM1_11937,407,689 - 37,489,283 (+)NCBICHM1_1
T2T-CHM13v2.01939,592,006 - 39,672,948 (+)NCBIT2T-CHM13v2.0
Znf568
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554682,031,119 - 2,088,171 (+)NCBIChiLan1.0ChiLan1.0
ZNF568
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22043,057,235 - 43,120,902 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11944,942,167 - 44,978,842 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01933,876,490 - 33,913,139 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11942,809,119 - 42,889,996 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC484559
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11115,896,324 - 115,975,907 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1115,306,503 - 115,385,832 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01116,501,439 - 116,579,049 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11116,071,323 - 116,151,232 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01115,689,786 - 115,769,216 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01116,741,616 - 116,816,046 (+)NCBIUU_Cfam_GSD_1.0
LOC101954335
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,811,517 - 11,815,088 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049381007,566 - 10,504 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF568
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1646,093,193 - 46,121,506 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2641,505,546 - 41,578,231 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF568
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1631,752,843 - 31,828,687 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660739,673,102 - 9,751,432 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf568
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479410,830,276 - 10,905,911 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Znf568l-ps1
20 total Variants

1 to 10 of 38 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat

1 to 10 of 38 rows






RefSeq Acc Id: XM_039093798   ⟹   XP_038949726
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2185,223,060 - 85,235,034 (+)NCBI
GenBank Protein AAB36816 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038949726   ⟸   XM_039093798



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60156 BioCyc
NCBI Gene 499123 ENTREZGENE
PhenoGen Znf568l-ps1 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-27 Znf568l-ps1  zinc finger protein 568 like, pseudogene 1  Znf568l-ps1  zinc finger protein 568 like, pseudogene 1  Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2022-06-27 Znf568l-ps1  zinc finger protein 568 like, pseudogene 1  Zfp569  zinc finger protein 569  Name and Symbol changed 629549 APPROVED
2006-02-09 Zfp569  zinc finger protein 569      Symbol and Name status set to provisional 70820 PROVISIONAL