Znf568 (zinc finger protein 568) - Rat Genome Database

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Gene: Znf568 (zinc finger protein 568) Heterocephalus glaber
Analyze
Symbol: Znf568
Name: zinc finger protein 568
RGD ID: 18902039
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN negative regulation of transcription by RNA polymerase II (inferred); regulation of cytokine production (inferred); regulation of DNA-templated transcription (inferred); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479410,830,276 - 10,905,911 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf568
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479410,830,276 - 10,905,911 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ZNF568
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381936,916,332 - 36,997,932 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1936,916,316 - 37,005,037 (+)EnsemblGRCh38hg38GRCh38
GRCh371937,407,234 - 37,488,834 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361942,099,074 - 42,134,290 (+)NCBINCBI36Build 36hg18NCBI36
Build 341942,099,084 - 42,135,483NCBI
Celera1934,191,526 - 34,226,724 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1933,876,317 - 33,958,032 (+)NCBIHuRef
CHM1_11937,407,689 - 37,489,283 (+)NCBICHM1_1
T2T-CHM13v2.01939,592,006 - 39,672,948 (+)NCBIT2T-CHM13v2.0
Znf568l-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,357,203 - 94,358,600 (+)NCBIGRCr8
mRatBN7.2185,229,794 - 85,231,191 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0187,886,409 - 87,889,357 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0189,468,434 - 89,472,490 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,006,869 - 85,017,880 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,602,381 - 79,605,329 (+)NCBICelera
Cytogenetic Map1q21NCBI
Znf568
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554682,031,119 - 2,088,171 (+)NCBIChiLan1.0ChiLan1.0
ZNF568
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22043,057,235 - 43,120,902 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11944,942,167 - 44,978,842 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01933,876,490 - 33,913,139 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11942,809,119 - 42,889,996 (-)NCBIpanpan1.1PanPan1.1panPan2
LOC484559
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11115,896,324 - 115,975,907 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1115,306,503 - 115,385,832 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01116,501,439 - 116,579,049 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11116,071,323 - 116,151,232 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01115,689,786 - 115,769,216 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01116,741,616 - 116,816,046 (+)NCBIUU_Cfam_GSD_1.0
LOC101954335
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,811,517 - 11,815,088 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049381007,566 - 10,504 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF568
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1646,093,193 - 46,121,506 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2641,505,546 - 41,578,231 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF568
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1631,752,843 - 31,828,687 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660739,673,102 - 9,751,432 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004858985   ⟹   XP_004859042
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479410,830,276 - 10,905,911 (-)NCBI
RefSeq Acc Id: XM_013077410   ⟹   XP_012932864
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479410,830,276 - 10,905,911 (-)NCBI
RefSeq Acc Id: XM_021239452   ⟹   XP_021095111
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479410,830,276 - 10,905,911 (-)NCBI
RefSeq Acc Id: XM_021239453   ⟹   XP_021095112
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462479410,864,838 - 10,875,647 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004859042 (Get FASTA)   NCBI Sequence Viewer  
  XP_012932864 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095111 (Get FASTA)   NCBI Sequence Viewer  
  XP_021095112 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000020070
RefSeq Acc Id: XP_012932864   ⟸   XM_013077410
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R3B0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021095111   ⟸   XM_021239452
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RCM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004859042   ⟸   XM_004858985
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R3B0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021095112   ⟸   XM_021239453
- Peptide Label: isoform X3
- UniProtKB: A0AAX6RBQ0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014373 ENTREZGENE
Ensembl Transcript ENSHGLT00000020270 ENTREZGENE
NCBI Gene Znf568 ENTREZGENE
UniProt A0AAX6R3B0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RBQ0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RCM0 ENTREZGENE, UniProtKB/TrEMBL