Tdrd12 (tudor domain containing 12) - Rat Genome Database

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Gene: Tdrd12 (tudor domain containing 12) Rattus norvegicus
Analyze
Symbol: Tdrd12
Name: tudor domain containing 12
RGD ID: 1562792
Description: Predicted to enable ATP binding activity and nucleic acid binding activity. Predicted to be involved in several processes, including male gamete generation; negative regulation of transposition, RNA-mediated; and nucleic acid metabolic process. Predicted to be part of PET complex. Orthologous to human TDRD12 (tudor domain containing 12); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; Cuprizon.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC292813; LOC689639; putative ATP-dependent RNA helicase TDRD12; RGD1562792; similar to CG11133-PA; similar to RIKEN cDNA 2410004F06
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2188,133,271 - 88,205,729 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl188,133,373 - 88,205,705 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0191,739,126 - 91,811,577 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,740,933 - 91,811,547 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,865,962 - 92,939,297 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4188,001,744 - 88,072,002 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.4188,009,688 - 88,027,194 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera182,483,162 - 82,555,576 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635   PMID:24067652   PMID:24270810   PMID:26669262  


Genomics

Comparative Map Data
Tdrd12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2188,133,271 - 88,205,729 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl188,133,373 - 88,205,705 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0191,739,126 - 91,811,577 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,740,933 - 91,811,547 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,865,962 - 92,939,297 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4188,001,744 - 88,072,002 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.4188,009,688 - 88,027,194 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera182,483,162 - 82,555,576 (-)NCBICelera
Cytogenetic Map1q21NCBI
TDRD12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381932,719,767 - 32,829,580 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1932,719,753 - 32,829,580 (+)EnsemblGRCh38hg38GRCh38
GRCh371933,210,673 - 33,320,486 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361937,902,499 - 38,004,006 (+)NCBINCBI36Build 36hg18NCBI36
Celera1929,904,299 - 29,975,332 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1929,713,951 - 29,784,334 (+)NCBIHuRef
CHM1_11933,211,966 - 33,282,865 (+)NCBICHM1_1
T2T-CHM13v2.01935,238,502 - 35,348,309 (+)NCBIT2T-CHM13v2.0
Tdrd12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39735,166,366 - 35,237,206 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl735,168,523 - 35,237,170 (-)EnsemblGRCm39 Ensembl
GRCm38735,466,941 - 35,537,784 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,469,098 - 35,537,745 (-)EnsemblGRCm38mm10GRCm38
MGSCv37736,278,629 - 36,322,763 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36735,202,370 - 35,246,442 (-)NCBIMGSCv36mm8
Celera730,622,196 - 30,666,614 (-)NCBICelera
Cytogenetic Map7B2NCBI
Tdrd12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554685,141,077 - 5,275,748 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554685,201,216 - 5,277,062 (-)NCBIChiLan1.0ChiLan1.0
TDRD12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11938,386,216 - 38,489,791 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1938,386,557 - 38,489,791 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01929,638,686 - 29,750,249 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TDRD12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,229,721 - 119,290,101 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1119,231,485 - 119,290,086 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,629,868 - 118,700,287 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,830,747 - 119,901,232 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,832,505 - 119,900,715 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,393,854 - 119,464,441 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01119,014,335 - 119,084,954 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01120,074,270 - 120,144,554 (-)NCBIUU_Cfam_GSD_1.0
Tdrd12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093498,630,237 - 8,698,838 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365702,947,425 - 3,015,549 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365702,947,069 - 3,015,549 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDRD12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl642,589,556 - 42,665,845 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1642,589,557 - 42,667,946 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,034,437 - 38,106,866 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TDRD12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1627,772,397 - 27,874,056 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl627,783,408 - 27,867,776 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660735,356,529 - 5,461,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tdrd12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247947,641,387 - 7,712,126 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247947,641,105 - 7,740,091 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tdrd12
259 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:35
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000017021
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat

Markers in Region
D1Got91  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2188,190,179 - 88,190,280 (+)MAPPERmRatBN7.2
Rnor_6.0191,796,024 - 91,796,124NCBIRnor6.0
Rnor_5.0192,923,769 - 92,923,869UniSTSRnor5.0
RGSC_v3.4188,056,635 - 88,056,736RGDRGSC3.4
RGSC_v3.4188,056,636 - 88,056,736UniSTSRGSC3.4
RGSC_v3.1188,134,747 - 88,134,847RGD
RH 3.4 Map1867.2UniSTS
RH 3.4 Map1867.2RGD
RH 2.0 Map1556.2RGD
Cytogenetic Map1q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 5
Low 3 26 26
Below cutoff 3 18 17 1 19 1 7 7 33 5 10 9 7

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017588860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC136661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000017021   ⟹   ENSRNOP00000017021
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl188,133,373 - 88,205,705 (-)Ensembl
Rnor_6.0 Ensembl191,740,933 - 91,811,547 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108717   ⟹   ENSRNOP00000096443
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl188,133,373 - 88,205,546 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113448   ⟹   ENSRNOP00000080995
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl188,133,373 - 88,205,705 (-)Ensembl
RefSeq Acc Id: XM_017590063   ⟹   XP_017445552
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,133,273 - 88,205,729 (-)NCBI
Rnor_6.0191,739,126 - 91,811,577 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590064   ⟹   XP_017445553
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,133,273 - 88,205,470 (-)NCBI
Rnor_6.0191,739,126 - 91,811,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017590065   ⟹   XP_017445554
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,133,273 - 88,204,734 (-)NCBI
Rnor_6.0191,739,126 - 91,811,577 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039100860   ⟹   XP_038956788
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,133,273 - 88,204,734 (-)NCBI
RefSeq Acc Id: XM_039100861   ⟹   XP_038956789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,133,273 - 88,205,729 (-)NCBI
RefSeq Acc Id: XM_039100862   ⟹   XP_038956790
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,133,272 - 88,197,478 (-)NCBI
RefSeq Acc Id: XM_039100863   ⟹   XP_038956791
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,133,272 - 88,181,941 (-)NCBI
RefSeq Acc Id: XM_039100864   ⟹   XP_038956792
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,133,271 - 88,157,138 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_017445552   ⟸   XM_017590063
- Peptide Label: isoform X2
- UniProtKB: F1LTR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445554   ⟸   XM_017590065
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017445553   ⟸   XM_017590064
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000017021   ⟸   ENSRNOT00000017021
RefSeq Acc Id: XP_038956792   ⟸   XM_039100864
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038956790   ⟸   XM_039100862
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038956791   ⟸   XM_039100863
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038956789   ⟸   XM_039100861
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038956788   ⟸   XM_039100860
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000080995   ⟸   ENSRNOT00000113448
RefSeq Acc Id: ENSRNOP00000096443   ⟸   ENSRNOT00000108717
Protein Domains
CS   Tudor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LTR3-F1-model_v2 AlphaFold F1LTR3 1-1308 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562792 AgrOrtholog
BioCyc Gene G2FUF-59971 BioCyc
Ensembl Genes ENSRNOG00000012719 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017021 ENTREZGENE
  ENSRNOP00000017021.5 UniProtKB/TrEMBL
  ENSRNOP00000080995.1 UniProtKB/TrEMBL
  ENSRNOP00000096443.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017021 ENTREZGENE
  ENSRNOT00000017021.7 UniProtKB/TrEMBL
  ENSRNOT00000108717.1 UniProtKB/TrEMBL
  ENSRNOT00000113448.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.90 UniProtKB/TrEMBL
  2.60.40.790 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro CS-like_domain UniProtKB/TrEMBL
  DNA/RNA_helicase_DEAD/DEAH_N UniProtKB/TrEMBL
  HSP20-like_chaperone UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Staphylococcal_nuclease/TUDOR UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
KEGG Report rno:689639 UniProtKB/TrEMBL
NCBI Gene 689639 ENTREZGENE
Pfam DEAD UniProtKB/TrEMBL
  PF04969 UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
PhenoGen Tdrd12 PhenoGen
PROSITE PS51203 UniProtKB/TrEMBL
Superfamily-SCOP HSP20_chap UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8I5ZR00_RAT UniProtKB/TrEMBL
  A0A8I6AQS7_RAT UniProtKB/TrEMBL
  F1LTR3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-09-08 Tdrd12  tudor domain containing 12  LOC689639  similar to CG11133-PA  Data Merged 737654 APPROVED
2008-03-19 Tdrd12  tudor domain containing 12  RGD1562792_predicted  similar to RIKEN cDNA 2410004F06 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC689639  similar to CG11133-PA      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1562792_predicted  similar to RIKEN cDNA 2410004F06 (predicted)  LOC292813  similar to RIKEN cDNA 2410004F06  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC292813  similar to RIKEN cDNA 2410004F06      Symbol and Name status set to provisional 70820 PROVISIONAL