Egln2 (egl-9 family hypoxia-inducible factor 2) - Rat Genome Database

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Gene: Egln2 (egl-9 family hypoxia-inducible factor 2) Rattus norvegicus
Analyze
Symbol: Egln2
Name: egl-9 family hypoxia-inducible factor 2
RGD ID: 631376
Description: Enables peptidyl-proline 4-dioxygenase activity. Involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to be located in nucleoplasm. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human EGLN2 (egl-9 family hypoxia inducible factor 2); PARTICIPATES IN hypoxia inducible factor pathway; vascular endothelial growth factor signaling pathway; renal cell carcinoma pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EGL nine homolog 2; EGL nine homolog 2 (C. elegans); HIF-1alpha prolyl-4-hydroxylase-1; HIF-PH1; HIF-prolyl hydroxylase 1; HPH-1; HPH-3; hypoxia-inducible factor prolyl hydroxylase 1; MGC93662; MGC93666; PHD-1; PHD1; prolyl hydroxylase domain-containing protein 1; prolyl hydroxylase EGLN2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2182,451,554 - 82,459,809 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,451,555 - 82,459,751 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx187,855,015 - 87,862,789 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0196,341,336 - 96,349,127 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0189,610,880 - 89,618,654 (-)NCBIRnor_WKY
Rnor_6.0183,969,456 - 83,977,665 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,969,457 - 83,977,236 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,180,394 - 85,188,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,233,239 - 82,240,990 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1182,311,350 - 82,318,466 (-)NCBI
Celera176,864,947 - 76,872,062 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Oxygen sensing in the hypoxic response pathway: regulation of the hypoxia-inducible transcription factor. Bruick RK Genes Dev 2003 Nov 1;17(21):2614-23.
2. Cloning and characterization of the rat HIF-1 alpha prolyl-4-hydroxylase-1 gene. Cobb RR, etal., Protein Expr Purif. 2005 Aug;42(2):295-304. doi: 10.1016/j.pep.2005.03.036.
3. Hypoxia up-regulates prolyl hydroxylase activity: a feedback mechanism that limits HIF-1 responses during reoxygenation. D'Angelo G, etal., J Biol Chem 2003 Oct 3;278(40):38183-7.
4. Beta-cell alpha-ketoglutarate hydroxylases may acutely participate in insulin secretion. Fallon MJ and MacDonald MJ, Metabolism. 2008 Aug;57(8):1148-54.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. HIF-1 and HIF-2 transcription factors--similar but not identical. Loboda A, etal., Mol Cells. 2010 May;29(5):435-42. Epub 2010 Apr 12.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10. GOA pipeline RGD automated data pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13. von Hippel-Lindau-dependent patterns of RNA polymerase II hydroxylation in human renal clear cell carcinomas. Yi Y, etal., Clin Cancer Res. 2010 Nov 1;16(21):5142-52. doi: 10.1158/1078-0432.CCR-09-3416. Epub 2010 Oct 26.
Additional References at PubMed
PMID:11595184   PMID:11598268   PMID:11850811   PMID:12039559   PMID:12615973   PMID:12788921   PMID:18488199   PMID:18651560   PMID:19420289   PMID:19587290   PMID:21262877   PMID:22351621  
PMID:22955912   PMID:28594552   PMID:29030976   PMID:34687132  


Genomics

Comparative Map Data
Egln2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2182,451,554 - 82,459,809 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,451,555 - 82,459,751 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx187,855,015 - 87,862,789 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0196,341,336 - 96,349,127 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0189,610,880 - 89,618,654 (-)NCBIRnor_WKY
Rnor_6.0183,969,456 - 83,977,665 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,969,457 - 83,977,236 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0185,180,394 - 85,188,608 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4182,233,239 - 82,240,990 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1182,311,350 - 82,318,466 (-)NCBI
Celera176,864,947 - 76,872,062 (-)NCBICelera
Cytogenetic Map1q21NCBI
EGLN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381940,799,191 - 40,808,434 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1940,798,996 - 40,808,434 (+)EnsemblGRCh38hg38GRCh38
GRCh371941,305,096 - 41,314,339 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361945,996,888 - 46,006,177 (+)NCBINCBI36Build 36hg18NCBI36
Build 341945,996,984 - 46,006,176NCBI
Celera1938,105,456 - 38,114,745 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1937,738,282 - 37,747,581 (+)NCBIHuRef
CHM1_11941,304,720 - 41,314,010 (+)NCBICHM1_1
T2T-CHM13v2.01943,619,870 - 43,629,113 (+)NCBIT2T-CHM13v2.0
Egln2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39726,858,083 - 26,866,227 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl726,858,083 - 26,866,227 (-)EnsemblGRCm39 Ensembl
GRCm38727,158,658 - 27,166,802 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,158,658 - 27,166,802 (-)EnsemblGRCm38mm10GRCm38
MGSCv37727,943,677 - 27,951,821 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36726,867,418 - 26,875,665 (-)NCBIMGSCv36mm8
Celera721,735,529 - 21,743,673 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map715.83NCBI
Egln2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955578548,578 - 557,609 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955578541,723 - 557,609 (-)NCBIChiLan1.0ChiLan1.0
EGLN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11946,348,912 - 46,357,875 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,349,131 - 46,357,875 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01937,842,460 - 37,851,465 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
EGLN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,992,779 - 113,001,836 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,992,780 - 113,000,677 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1112,395,201 - 112,404,270 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,591,219 - 113,600,286 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,591,219 - 113,600,269 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,150,646 - 113,159,694 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,782,626 - 112,791,680 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,776,727 - 113,785,794 (-)NCBIUU_Cfam_GSD_1.0
Egln2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934914,633,248 - 14,642,158 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366613,061,308 - 3,070,192 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049366613,061,391 - 3,070,219 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EGLN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1649,002,266 - 49,010,042 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,685,765 - 44,694,868 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EGLN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,251,247 - 35,263,717 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl635,251,237 - 35,260,040 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607313,388,843 - 13,402,293 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Egln2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624925707,583 - 716,456 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624925708,920 - 716,084 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Egln2
11 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:162
Count of miRNA genes:120
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000028434
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat

Markers in Region
BF418972  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2182,451,320 - 82,451,503 (+)MAPPERmRatBN7.2
Rnor_6.0183,969,223 - 83,969,405NCBIRnor6.0
Rnor_5.0185,180,161 - 85,180,343UniSTSRnor5.0
RGSC_v3.4182,233,006 - 82,233,188UniSTSRGSC3.4
Celera176,864,714 - 76,864,896UniSTS
RH 3.4 Map1840.4UniSTS
Cytogenetic Map1q21UniSTS
RH125240  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2182,451,578 - 82,451,695 (+)MAPPERmRatBN7.2
Rnor_6.0183,969,481 - 83,969,597NCBIRnor6.0
Rnor_5.0185,180,419 - 85,180,535UniSTSRnor5.0
RGSC_v3.4182,233,264 - 82,233,380UniSTSRGSC3.4
Celera176,864,972 - 76,865,088UniSTS
Cytogenetic Map1q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000028434   ⟹   ENSRNOP00000028434
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl182,451,555 - 82,459,751 (-)Ensembl
Rnor_6.0 Ensembl183,969,457 - 83,977,236 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116136   ⟹   ENSRNOP00000081509
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl182,451,557 - 82,459,697 (-)Ensembl
RefSeq Acc Id: NM_001004083   ⟹   NP_001004083
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2182,451,554 - 82,459,334 (-)NCBI
Rnor_6.0183,969,456 - 83,977,236 (-)NCBI
Rnor_5.0185,180,394 - 85,188,608 (-)NCBI
RGSC_v3.4182,233,239 - 82,240,990 (-)RGD
Celera176,864,947 - 76,872,062 (-)RGD
Sequence:
RefSeq Acc Id: XM_006228575   ⟹   XP_006228637
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2182,451,554 - 82,459,809 (-)NCBI
Rnor_6.0183,969,456 - 83,977,665 (-)NCBI
Rnor_5.0185,180,394 - 85,188,608 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111529   ⟹   XP_038967457
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2182,451,554 - 82,459,809 (-)NCBI
RefSeq Acc Id: XM_039111536   ⟹   XP_038967464
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2182,451,554 - 82,454,269 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001004083   ⟸   NM_001004083
- UniProtKB: Q6AYU4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006228637   ⟸   XM_006228575
- Peptide Label: isoform X2
- UniProtKB: Q6AYU4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000028434   ⟸   ENSRNOT00000028434
RefSeq Acc Id: XP_038967457   ⟸   XM_039111529
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZS56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967464   ⟸   XM_039111536
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000081509   ⟸   ENSRNOT00000116136
Protein Domains
Fe2OG dioxygenase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYU4-F1-model_v2 AlphaFold Q6AYU4 1-415 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689843
Promoter ID:EPDNEW_R368
Type:single initiation site
Name:Egln2_1
Description:egl-9 family hypoxia-inducible factor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0183,977,177 - 83,977,237EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:631376 AgrOrtholog
BioCyc Gene G2FUF-60325 BioCyc
BioCyc Pathway PWY-7894 [procollagen hydroxylation and glycosylation] BioCyc
Ensembl Genes ENSRNOG00000020947 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000028434 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000081509 ENTREZGENE
  ENSRNOP00000081509.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028434 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000116136 ENTREZGENE
  ENSRNOT00000116136.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7107517 IMAGE-MGC_LOAD
  IMAGE:7113703 IMAGE-MGC_LOAD
InterPro Oxoglu/Fe-dep_dioxygenase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pro_4_hyd_alph UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pro_4_hyd_alph_FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:308457 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93662 IMAGE-MGC_LOAD
  MGC:93666 IMAGE-MGC_LOAD
NCBI Gene 308457 ENTREZGENE
Pfam 2OG-FeII_Oxy_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Egln2 PhenoGen
PROSITE FE2OG_OXY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART P4Hc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZS56 ENTREZGENE, UniProtKB/TrEMBL
  EGLN2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-16 Egln2  egl-9 family hypoxia-inducible factor 2  Egln2  EGL nine homolog 2 (C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-02-11 Elgn2  EGL nine homolog 2 (C. elegans)      Symbol and Name status set to approved 625702 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_function rapidly hydroxylates Pro-564 of Hif1 alpha 727754