Fxyd7 (FXYD domain-containing ion transport regulator 7) - Rat Genome Database

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Gene: Fxyd7 (FXYD domain-containing ion transport regulator 7) Rattus norvegicus
Analyze
Symbol: Fxyd7
Name: FXYD domain-containing ion transport regulator 7
RGD ID: 620830
Description: Enables ATPase binding activity. Involved in regulation of ion transport. Predicted to be located in membrane. Orthologous to human FXYD7 (FXYD domain containing ion transport regulator 7); INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: REVIEWED
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2186,277,678 - 86,286,954 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,277,678 - 86,286,954 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,698,075 - 91,707,340 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01100,164,220 - 100,173,485 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0193,456,352 - 93,465,618 (-)NCBIRnor_WKY
Rnor_6.0189,474,601 - 89,484,069 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,474,601 - 89,483,988 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,630,083 - 90,639,163 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,086,024 - 86,095,045 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,164,134 - 86,173,156 (-)NCBI
Celera180,646,722 - 80,655,737 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA,TAS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. FXYD7 is a brain-specific regulator of Na,K-ATPase alpha 1-beta isozymes. Beguin P, etal., EMBO J 2002 Jul 1;21(13):3264-73.
2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, etal., Genome Res 1996 Sep;6(9):791-806.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. The FXYD gene family of small ion transport regulators or channels: cDNA sequence, protein signature sequence, and expression. Sweadner KJ and Rael E, Genomics 2000 Aug 15;68(1):41-56.

Genomics

Comparative Map Data
Fxyd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2186,277,678 - 86,286,954 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,277,678 - 86,286,954 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,698,075 - 91,707,340 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01100,164,220 - 100,173,485 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0193,456,352 - 93,465,618 (-)NCBIRnor_WKY
Rnor_6.0189,474,601 - 89,484,069 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,474,601 - 89,483,988 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,630,083 - 90,639,163 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,086,024 - 86,095,045 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,164,134 - 86,173,156 (-)NCBI
Celera180,646,722 - 80,655,737 (-)NCBICelera
Cytogenetic Map1q21NCBI
FXYD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,143,255 - 35,154,302 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1935,143,250 - 35,154,302 (+)EnsemblGRCh38hg38GRCh38
GRCh371935,634,159 - 35,645,205 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,325,994 - 40,337,045 (+)NCBINCBI36Build 36hg18NCBI36
Build 341940,325,993 - 40,337,045NCBI
Celera1932,347,590 - 32,358,642 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,142,138 - 32,153,582 (+)NCBIHuRef
CHM1_11935,636,092 - 35,647,092 (+)NCBICHM1_1
T2T-CHM13v2.01937,687,883 - 37,698,927 (+)NCBIT2T-CHM13v2.0
Fxyd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,741,940 - 30,750,879 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,741,938 - 30,750,892 (-)EnsemblGRCm39 Ensembl
GRCm38731,042,515 - 31,051,454 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl731,042,513 - 31,051,467 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,827,534 - 31,836,473 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,751,275 - 30,760,214 (-)NCBIMGSCv36mm8
Celera725,610,035 - 25,618,974 (-)NCBICelera
Cytogenetic Map7B1NCBI
Fxyd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,460,899 - 4,469,936 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554684,460,899 - 4,469,936 (+)NCBIChiLan1.0ChiLan1.0
FXYD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11940,827,468 - 40,838,549 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1940,827,468 - 40,838,549 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01932,089,090 - 32,100,331 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FXYD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,431,620 - 117,432,877 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,827,739 - 116,836,769 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01118,024,670 - 118,033,704 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1118,024,676 - 118,033,686 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,587,291 - 117,596,413 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,212,620 - 117,221,642 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,269,089 - 118,278,125 (-)NCBIUU_Cfam_GSD_1.0
FXYD7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,076,144 - 30,087,176 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,076,294 - 30,086,786 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660737,849,379 - 7,860,533 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fxyd7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,359,477 - 8,368,349 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,359,477 - 8,368,419 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fxyd7
50 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:76
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000028603
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat

Markers in Region
RH130316  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2186,277,824 - 86,278,018 (+)MAPPERmRatBN7.2
Rnor_6.0189,474,748 - 89,474,941NCBIRnor6.0
Rnor_5.0190,630,230 - 90,630,423UniSTSRnor5.0
RGSC_v3.4186,086,171 - 86,086,364UniSTSRGSC3.4
Celera180,646,869 - 80,647,062UniSTS
Cytogenetic Map1q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 52 1
Low 3 37 17 2 18 2 7 10 16 16 36 11 7
Below cutoff 2 20 19 1 19 1 1 2 17 4 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000028603   ⟹   ENSRNOP00000028603
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,277,678 - 86,286,954 (-)Ensembl
Rnor_6.0 Ensembl189,474,601 - 89,483,988 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104504   ⟹   ENSRNOP00000090220
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,277,678 - 86,286,954 (-)Ensembl
RefSeq Acc Id: NM_022008   ⟹   NP_071291
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2186,277,678 - 86,286,954 (-)NCBI
Rnor_6.0189,474,601 - 89,483,988 (-)NCBI
Rnor_5.0190,630,083 - 90,639,163 (-)NCBI
RGSC_v3.4186,086,024 - 86,095,045 (-)RGD
Celera180,646,722 - 80,655,737 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_071291 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM07686 (Get FASTA)   NCBI Sequence Viewer  
  P59649 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_071291   ⟸   NM_022008
- UniProtKB: P59649 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000028603   ⟸   ENSRNOT00000028603
RefSeq Acc Id: ENSRNOP00000090220   ⟸   ENSRNOT00000104504

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P59649-F1-model_v2 AlphaFold P59649 1-80 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689941
Promoter ID:EPDNEW_R466
Type:multiple initiation site
Name:Fxyd7_1
Description:FXYD domain-containing ion transport regulator 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0189,483,972 - 89,484,032EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620830 AgrOrtholog
BioCyc Gene G2FUF-60050 BioCyc
Ensembl Genes ENSRNOG00000021067 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000028603.6 UniProtKB/TrEMBL
  ENSRNOP00000090220.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000028603.6 UniProtKB/TrEMBL
  ENSRNOT00000104504.1 UniProtKB/TrEMBL
InterPro Ion-transport_regulator_FXYD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:63848 UniProtKB/Swiss-Prot
NCBI Gene 63848 ENTREZGENE
Pfam ATP1G1_PLM_MAT8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fxyd7 PhenoGen
PROSITE FXYD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A8Z2_RAT UniProtKB/TrEMBL
  A0A8L2UKL5_RAT UniProtKB/TrEMBL
  FXYD7_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Fxyd7  FXYD domain-containing ion transport regulator 7      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Fxyd7  FXYD domain-containing ion transport regulator 7      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_function function as ion channels by assembling into multi-subunit complexes 632671
gene_product member of FXYD family of proteins has a 35 amino acid signature sequence 632671