Ffar2 (free fatty acid receptor 2)

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Gene: Ffar2 (free fatty acid receptor 2) Rattus norvegicus

Analyze

Symbol:

Ffar2

Name:

free fatty acid receptor 2

RGD ID:

1359614

Description:

Exhibits G protein-coupled receptor activity. Involved in G protein-coupled receptor signaling pathway and cellular response to fatty acid. Localizes to cell projection. Orthologous to human FFAR2 (free fatty acid receptor 2); INTERACTS WITH acetamide; bisphenol A; decabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

G protein-coupled receptor 43; G-protein coupled receptor 43; Gpr43

RGD Orthologs

Human

Mouse

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FFAR2 (free fatty acid receptor 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ffar2 (free fatty acid receptor 2)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Pan paniscus (bonobo/pygmy chimpanzee):	FFAR2 (free fatty acid receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FFAR2 (free fatty acid receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ffar2 (free fatty acid receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FFAR2 (free fatty acid receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	FFAR2 (free fatty acid receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ffar2 (free fatty acid receptor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FFAR2 (free fatty acid receptor 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Ffar2 (free fatty acid receptor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	si:dkey-211g8.7	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	si:dkey-211g8.6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	1	89,268,197 - 89,271,942 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	89,268,938 - 89,269,930 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	90,424,349 - 90,426,614 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,878,452 - 85,879,444 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	85,956,562 - 85,957,555 (-)	NCBI
Celera	1	80,441,218 - 80,442,210 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dystonia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

carbon nanotube (ISO)

decabromodiphenyl ether (EXP)

dextran sulfate (ISO)

elemental selenium (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

genistein (ISO)

methyl methanesulfonate (ISO)

propanal (ISO)

protein kinase inhibitor (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium fluoride (ISO)

sulforaphane (ISO)

titanium dioxide (ISO)

toluene 2,4-diisocyanate (ISO)

triclocarban (EXP)

trimellitic anhydride (ISO)

troglitazone (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cell surface pattern recognition receptor signaling pathway (ISO,ISS)

cellular response to fatty acid (IDA,ISO)

fat cell differentiation (ISO,ISS)

G protein-coupled receptor signaling pathway (IDA,ISO)

glucose homeostasis (ISO,ISS)

leukocyte chemotaxis involved in inflammatory response (ISO,ISS)

lipid storage (ISO,ISS)

mucosal immune response (ISO,ISS)

positive regulation of acute inflammatory response to non-antigenic stimulus (ISO,ISS)

positive regulation of chemokine production (ISO,ISS)

positive regulation of cytokine production involved in immune response (ISO,ISS)

positive regulation of interleukin-8 production (ISO,ISS)

regulation of acute inflammatory response (ISO,ISS)

regulation of peptide hormone secretion (ISO,ISS)

Cellular Component

cell projection (IDA)

integral component of membrane (IEA)

plasma membrane (ISO,ISS)

Molecular Function

G protein-coupled receptor activity (IDA,ISO)

lipid binding (IEA)

molecular_function (ND)

protein binding (ISO)

References

References - curated


1.	GOA data from the GO Consortium
2.	Hudson BD, etal., J Biol Chem. 2013 Jun 14;288(24):17296-312. doi: 10.1074/jbc.M113.455337. Epub 2013 Apr 15.
3.	Karaki S, etal., Cell Tissue Res. 2006 Jun;324(3):353-60. Epub 2006 Feb 1.
4.	MGD data from the GO Consortium
5.	RGD automated data pipeline
6.	RGD automated import pipeline for gene-chemical interactions
7.	RGD comprehensive gene curation

Additional References at PubMed

PMID:12496283	PMID:16123168	PMID:18801738	PMID:19865172	PMID:21037097	PMID:22178946	PMID:22190648	PMID:23066016	PMID:23665276	PMID:25310566	PMID:29369009	PMID:31728701

Genomics

Comparative Map Data

Ffar2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	1	89,268,197 - 89,271,942 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	89,268,938 - 89,269,930 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	90,424,349 - 90,426,614 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,878,452 - 85,879,444 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	85,956,562 - 85,957,555 (-)	NCBI
Celera	1	80,441,218 - 80,442,210 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

FFAR2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	35,443,907 - 35,451,767 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	35,448,257 - 35,451,767 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	35,939,185 - 35,942,669 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	40,632,457 - 40,633,449 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	19	40,632,456 - 40,633,449	NCBI
Celera	19	32,654,111 - 32,656,163 (+)	NCBI
Cytogenetic Map	19	q13.12	NCBI
HuRef	19	32,447,169 - 32,449,221 (+)	NCBI		HuRef
CHM1_1	19	35,942,259 - 35,944,310 (+)	NCBI		CHM1_1

Ffar2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	30,517,778 - 30,523,200 (-)	NCBI	GRCm39		mm39
GRCm38	7	30,818,031 - 30,823,775 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	30,818,348 - 30,823,775 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	31,603,376 - 31,608,794 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	7	30,527,117 - 30,532,535 (-)	NCBI			mm8
Celera	7	25,400,917 - 25,406,335 (-)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI

FFAR2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	41,132,599 - 41,134,646 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	41,132,599 - 41,133,591 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	32,394,401 - 32,398,730 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

FFAR2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	1	117,198,289 - 117,199,284 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	1	117,197,535 - 117,201,613 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Ffar2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936570	895,364 - 896,356 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FFAR2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	44,899,336 - 44,904,459 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	44,899,879 - 44,904,461 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	40,281,282 - 40,285,863 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FFAR2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	30,375,607 - 30,379,479 (+)	NCBI

Ffar2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	8,140,629 - 8,155,313 (-)	NCBI

Position Markers

Ffar2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	89,269,227 - 89,269,669	NCBI	Rnor6.0
Rnor_5.0	1	90,424,753 - 90,425,195	UniSTS	Rnor5.0
Celera	1	80,441,507 - 80,441,949	UniSTS
Cytogenetic Map	1	q21	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	49147799	156446783	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5655769	122614963	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	86776571	131776571	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	50522714	94225616	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	23406428	108057505	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	67227683	94201552	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	79689548	124689548	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	64588516	125875986	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	66113339	122614963	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	35377508	94364229	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	25951907	130917265	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	35377692	217372257	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	79134941	113593716	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	85917265	130917265	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49578577	94578577	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49578577	169852184	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	57761301	104391981	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	85779320	130779320	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	79689765	94909507	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34993530	173445086	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	58354072	161711996	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	83656882	126240667	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43579208	126240667	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43579208	126240667	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	83502376	128502376	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	58209327	103209327	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43579208	126240667	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	82788437	239853971	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	1	43579208	126240667	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49578693	217054291	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43579208	126240667	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	88634585	106002500	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	65
Count of miRNA genes:	51
Interacting mature miRNAs:	56
Transcripts:	ENSRNOT00000028532
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium
Low	3	16	34	24	19	24				8	30	11
Below cutoff		24	13	7		7	3	5	43	25	10		3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001005877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07002921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01004574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB106675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000028532 ⟹ ENSRNOP00000028532

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	89,268,938 - 89,269,930 (-)	Ensembl

RefSeq Acc Id:

NM_001005877 ⟹ NP_001005877

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	89,268,938 - 89,269,930 (-)	NCBI
Rnor_5.0	1	90,424,349 - 90,426,614 (-)	NCBI
RGSC_v3.4	1	85,878,452 - 85,879,444 (-)	RGD
Celera	1	80,441,218 - 80,442,210 (-)	RGD

Sequence:

show sequence

ATGACCCCAGACTGGCACAGTTCCTTGATCCTCACGGCCTACATCCTCATCTTTCTTACTGGGC
TCCCTGCCAACCTGCTGGCCCTGCGGGCCTTCGTGAGCCGGGTTCGCCAGCCCCAGCCTGCACC
CGTGCACATCCTCCTGCTTAATCTGACCCTGGCGGACTTGCTGTTGTTGCTGCTGCTGCCCTTC
CGGATCGTGGAAGCTGCATCCAACTTCCGCTGGTACCTACCAAAGATCGTGTGCGCGCTCACGG
GCTTCGGCTTCTACAGCAGTATCTACTGCAGCACGTGGCTGCTGGCGGGCATCAGCATAGAACG
CTACCTGGGAGTGGCTTTCCCGGTGCAGTACAAGCTATCCCGCCGGCCACTGTACGGAGTGATC
GCTGCTCTGGTGGCCTGGATCATGTCCTTTGGCCATTGCACCATCGTCATCATCGTTCAGTACC
TGAACTCAACCGAGCAGGTGGGCACCGAGAACCAAATCACCTGCTATGAGAACTTCACCCAAGC
GCAGCTGGATGTGGTGCTGCCCGTGCGACTGGAGCTGTGCCTGGTCCTCTTTTTCGTCCCCATG
ACAGTCACCATCTTCTGCTATTGGCGCTTTGTATGGATCATGCTCACACAGCCCCATGTTGGGG
CTCAGAGGCGACGCCGGGCGGTGGGCCTGGCTGTGGTGACGCTTCTTAATTTCCTGGTGTGCTT
TGGACCTTACAACATGTCCCACCTGGTGGGGTTCCACTTGAGGCAGAGTCCCTCGTGGCGGGTG
GAGGCTGTGGTGTTCAGTTCCCTCAATGCCAGCCTGGACCCTCTGCTATTCTACTTCTCCTCCT
CCGTGGTACGCAGGGCCTTCGGGAAAGGTTTGCTACTACTCCGCAATCCCGGCTCCTCTATGCT
GGGCAGGGGAGCCGAAGAGACAGTGGAGGGGACCAAGACAGACAGGGGTGGGAGTCAAACAGAA
GGGGCACAGAGCTCTGACTTTGTCACCGAGTGA

hide sequence

RefSeq Acc Id:

XM_006228822 ⟹ XP_006228884

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	89,268,197 - 89,271,216 (-)	NCBI
Rnor_5.0	1	90,424,349 - 90,426,614 (-)	NCBI

Sequence:

show sequence

CAGGAAGTAGGGTCAGAAAAATCTGTCGAAGTTGGAATAGATCAGATCTCCAGGGAGAGGACAG
AGCTGCAGGCCCCCCTGCTTTGGGTTTGAGAGGAAATACTGCTCAATCAGACCTGCCTTTCTCT
CTGGTCACATGACCCACGCTAGTATAACAGCTTCCTACCAACCAAGTTCCTTATGATTTCTGGC
TCCCCCTCCTTTTTCTGTACGAAATTGGCTGCGACAACTGCTAAAACTCCTCTTGCACCTCAGG
AACCCCCAAGAAACCTATCAGAAGCCAAGCAAGGATCCACAGCCCTGGACCAGAGGAGAACCAG
GTGGAAGAAACCCCTGAACTTGCCCAAGGAGAATGACCCCAGACTGGCACAGTTCCTTGATCCT
CACGGCCTACATCCTCATCTTTCTTACTGGGCTCCCTGCCAACCTGCTGGCCCTGCGGGCCTTC
GTGAGCCGGGTTCGCCAGCCCCAGCCTGCACCCGTGCACATCCTCCTGCTTAATCTGACCCTGG
CGGACTTGCTGTTGTTGCTGCTGCTGCCCTTCCGGATCGTGGAAGCTGCATCCAACTTCCGCTG
GTACCTACCAAAGATCGTGTGCGCGCTCACGGGCTTCGGCTTCTACAGCAGTATCTACTGCAGC
ACGTGGCTGCTGGCGGGCATCAGCATAGAACGCTACCTGGGAGTGGCTTTCCCGGTGCAGTACA
AGCTATCCCGCCGGCCACTGTACGGAGTGATCGCTGCTCTGGTGGCCTGGATCATGTCCTTTGG
CCATTGCACCATCGTCATCATCGTTCAGTACCTGAACTCAACCGAGCAGGTGGGCACCGAGAAC
CAAATCACCTGCTATGAGAACTTCACCCAAGCGCAGCTGGATGTGGTGCTGCCCGTGCGACTGG
AGCTGTGCCTGGTCCTCTTTTTCGTCCCCATGACAGTCACCATCTTCTGCTATTGGCGCTTTGT
GTGGATCATGCTCACACAGCCCCATGTTGGGGCTCAGAGGCGACGCCGGGCGGTGGGCCTGGCT
GTGGTGACGCTTCTTAATTTCCTGGTGTGCTTTGGACCTTACAACATGTCCCACCTGGTGGGGT
TCCACTTGAGGCAGAGTCCCTCGTGGCGGGTGGAGGCTGTGGTGTTCAGTTCCCTCAATGCCAG
CCTGGACCCTCTGCTATTCTACTTCTCCTCCTCCGTGGTACGCAGGGCCTTCGGGAAAGGTTTG
CTACTACTCCGCAATCCCGGCTCCTCTATGCTGGGCAGGGGAGCCGAAGAGACAGTGGAGGGGA
CCAAGACAGACAGGGGTGGGAGTCAAACAGAAGGGGCACAGAGCTCTGACTTTGTCACCGAGTG
AGTATAGAGTCGCCCGGATCTTCCCGAGCGTCTAGGTCACTCAGAAGTTGGGCTGGTTAGCAGA
GCTCCTGAGACTTGGTAAAAGATAAAAGGTTATAAAAAAAAGAAAGACACCCCTTCACACACAC
ACACACCCCACCCCTTTGCCACTGTTCTCTCGGATCTGCAGAACCTCTTGGCTGAATTTTCCTG
CCCAAGGAAGCACAGCTCCAGGATACAAGAAGAAATGGCTGCACCCCTGCACCCCTTTTCACAC
CTGTGAAATTACACTGGAGGCAGGGGCTCAGAGGCAAGGTGACTAATAGGAGTGTGGCTGTTTT
CTTCAAGGTTGGAAACACCACCTAGAGACATTGGTCTGGCTGGTGATGCTGGGAAGAAGCCAAT
GGAAAAGACAGGGGAGAGATGGTGGGAAGAAGAGGAATTCTGGGAAAGCTCTAAGCCACGGGCT
TGCGGGGGGGGGGGGGTACAGGGCTCCCATCTCTGGTGATCTTGGTCTTTCTGTATCCGATTGA
GCTGTGCCTTGCACATGTGCTCCGCTGATGTTCGTATTTCGGTCTTGTCTCCGCCGTTACACTG
GGATCTGGGTTACCCAGTGCCTGGTTTATCCTCAGTGTCACTGCCCCGGGACTAGGTGCAGATC
CATGTCTTGGTACCCATCTGTCTGACATTGACAATGACCTGCATGGAAAGAAAAAACAAATCTG
GTTTGGCAGGTTTAAAATAAATATTATGAAAGTCTGAA

hide sequence

RefSeq Acc Id:

XM_008759133 ⟹ XP_008757355

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	89,268,197 - 89,271,216 (-)	NCBI

Sequence:

show sequence

CAGGAAGTAGGGTCAGAAAAATCTGTCGAAGTTGGAATAGATCAGATCTCCAGGGAGAGGACAG
AGCTGCAGGCCCCCCTGCTTTGGGTTTGAGAGGAAATACTGCTCAATCAGACCTGCCTTTCTCT
CTGGTCACATGACCCACGCTAGTATAACAGCTTCCTACCAACCAAGTTCCTTATGATTTCTGGC
TCCCCCTCCTTTTTCTGTACGAAATTGGCTGCGACAACTGCTAAAACTCCTCTTGCACCTCAGG
AACCCCCAAGAAACCTATCAGAAGCCAAGCAAGGCAAGCCAGCTTAGCGTGTGCAGGCAGGGGC
ATGATGCTGGGATTGAGGAGCGGCTGTGGGGTGAGGAGGAGGCTGGAGGATGTCTGTCAGAGCA
AAAGAGATCCACAGCCCTGGACCAGAGGAGAACCAGGTGGAAGAAACCCCTGAACTTGCCCAAG
GAGAATGACCCCAGACTGGCACAGTTCCTTGATCCTCACGGCCTACATCCTCATCTTTCTTACT
GGGCTCCCTGCCAACCTGCTGGCCCTGCGGGCCTTCGTGAGCCGGGTTCGCCAGCCCCAGCCTG
CACCCGTGCACATCCTCCTGCTTAATCTGACCCTGGCGGACTTGCTGTTGTTGCTGCTGCTGCC
CTTCCGGATCGTGGAAGCTGCATCCAACTTCCGCTGGTACCTACCAAAGATCGTGTGCGCGCTC
ACGGGCTTCGGCTTCTACAGCAGTATCTACTGCAGCACGTGGCTGCTGGCGGGCATCAGCATAG
AACGCTACCTGGGAGTGGCTTTCCCGGTGCAGTACAAGCTATCCCGCCGGCCACTGTACGGAGT
GATCGCTGCTCTGGTGGCCTGGATCATGTCCTTTGGCCATTGCACCATCGTCATCATCGTTCAG
TACCTGAACTCAACCGAGCAGGTGGGCACCGAGAACCAAATCACCTGCTATGAGAACTTCACCC
AAGCGCAGCTGGATGTGGTGCTGCCCGTGCGACTGGAGCTGTGCCTGGTCCTCTTTTTCGTCCC
CATGACAGTCACCATCTTCTGCTATTGGCGCTTTGTGTGGATCATGCTCACACAGCCCCATGTT
GGGGCTCAGAGGCGACGCCGGGCGGTGGGCCTGGCTGTGGTGACGCTTCTTAATTTCCTGGTGT
GCTTTGGACCTTACAACATGTCCCACCTGGTGGGGTTCCACTTGAGGCAGAGTCCCTCGTGGCG
GGTGGAGGCTGTGGTGTTCAGTTCCCTCAATGCCAGCCTGGACCCTCTGCTATTCTACTTCTCC
TCCTCCGTGGTACGCAGGGCCTTCGGGAAAGGTTTGCTACTACTCCGCAATCCCGGCTCCTCTA
TGCTGGGCAGGGGAGCCGAAGAGACAGTGGAGGGGACCAAGACAGACAGGGGTGGGAGTCAAAC
AGAAGGGGCACAGAGCTCTGACTTTGTCACCGAGTGAGTATAGAGTCGCCCGGATCTTCCCGAG
CGTCTAGGTCACTCAGAAGTTGGGCTGGTTAGCAGAGCTCCTGAGACTTGGTAAAAGATAAAAG
GTTATAAAAAAAAGAAAGACACCCCTTCACACACACACACACCCCACCCCTTTGCCACTGTTCT
CTCGGATCTGCAGAACCTCTTGGCTGAATTTTCCTGCCCAAGGAAGCACAGCTCCAGGATACAA
GAAGAAATGGCTGCACCCCTGCACCCCTTTTCACACCTGTGAAATTACACTGGAGGCAGGGGCT
CAGAGGCAAGGTGACTAATAGGAGTGTGGCTGTTTTCTTCAAGGTTGGAAACACCACCTAGAGA
CATTGGTCTGGCTGGTGATGCTGGGAAGAAGCCAATGGAAAAGACAGGGGAGAGATGGTGGGAA
GAAGAGGAATTCTGGGAAAGCTCTAAGCCACGGGCTTGCGGGGGGGGGGGGGTACAGGGCTCCC
ATCTCTGGTGATCTTGGTCTTTCTGTATCCGATTGAGCTGTGCCTTGCACATGTGCTCCGCTGA
TGTTCGTATTTCGGTCTTGTCTCCGCCGTTACACTGGGATCTGGGTTACCCAGTGCCTGGTTTA
TCCTCAGTGTCACTGCCCCGGGACTAGGTGCAGATCCATGTCTTGGTACCCATCTGTCTGACAT
TGACAATGACCTGCATGGAAAGAAAAAACAAATCTGGTTTGGCAGGTTTAAAATAAATATTATG
AAAGTCTGAA

hide sequence

RefSeq Acc Id:

XM_008759134 ⟹ XP_008757356

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	89,268,197 - 89,271,216 (-)	NCBI

Sequence:

show sequence

CAGGAAGTAGGGTCAGAAAAATCTGTCGAAGTTGGAATAGATCAGATCTCCAGGGAGAGGACAG
AGCTGCAGGCCCCCCTGCTTTGGGTTTGAGAGGAAATACTGCTCAATCAGACCTGCCTTTCTCT
CTGGTCACATGACCCACGCTAGTATAACAGCTTCCTACCAACCAAGTTCCTTATGATTTCTGGC
TCCCCCTCCTTTTTCTGTACGAAATTGGCTGCGACAACTGCTAAAACTCCTCTTGCACCTCAGG
AACCCCCAAGAAACCTATCAGAAGCCAAGCAAGGCAAGCCAGCTTAGCGTGTGCAGGCAGGGGC
ATGATGCTGGGATTGAGGAGCGGCTGTGGGGATCCACAGCCCTGGACCAGAGGAGAACCAGGTG
GAAGAAACCCCTGAACTTGCCCAAGGAGAATGACCCCAGACTGGCACAGTTCCTTGATCCTCAC
GGCCTACATCCTCATCTTTCTTACTGGGCTCCCTGCCAACCTGCTGGCCCTGCGGGCCTTCGTG
AGCCGGGTTCGCCAGCCCCAGCCTGCACCCGTGCACATCCTCCTGCTTAATCTGACCCTGGCGG
ACTTGCTGTTGTTGCTGCTGCTGCCCTTCCGGATCGTGGAAGCTGCATCCAACTTCCGCTGGTA
CCTACCAAAGATCGTGTGCGCGCTCACGGGCTTCGGCTTCTACAGCAGTATCTACTGCAGCACG
TGGCTGCTGGCGGGCATCAGCATAGAACGCTACCTGGGAGTGGCTTTCCCGGTGCAGTACAAGC
TATCCCGCCGGCCACTGTACGGAGTGATCGCTGCTCTGGTGGCCTGGATCATGTCCTTTGGCCA
TTGCACCATCGTCATCATCGTTCAGTACCTGAACTCAACCGAGCAGGTGGGCACCGAGAACCAA
ATCACCTGCTATGAGAACTTCACCCAAGCGCAGCTGGATGTGGTGCTGCCCGTGCGACTGGAGC
TGTGCCTGGTCCTCTTTTTCGTCCCCATGACAGTCACCATCTTCTGCTATTGGCGCTTTGTGTG
GATCATGCTCACACAGCCCCATGTTGGGGCTCAGAGGCGACGCCGGGCGGTGGGCCTGGCTGTG
GTGACGCTTCTTAATTTCCTGGTGTGCTTTGGACCTTACAACATGTCCCACCTGGTGGGGTTCC
ACTTGAGGCAGAGTCCCTCGTGGCGGGTGGAGGCTGTGGTGTTCAGTTCCCTCAATGCCAGCCT
GGACCCTCTGCTATTCTACTTCTCCTCCTCCGTGGTACGCAGGGCCTTCGGGAAAGGTTTGCTA
CTACTCCGCAATCCCGGCTCCTCTATGCTGGGCAGGGGAGCCGAAGAGACAGTGGAGGGGACCA
AGACAGACAGGGGTGGGAGTCAAACAGAAGGGGCACAGAGCTCTGACTTTGTCACCGAGTGAGT
ATAGAGTCGCCCGGATCTTCCCGAGCGTCTAGGTCACTCAGAAGTTGGGCTGGTTAGCAGAGCT
CCTGAGACTTGGTAAAAGATAAAAGGTTATAAAAAAAAGAAAGACACCCCTTCACACACACACA
CACCCCACCCCTTTGCCACTGTTCTCTCGGATCTGCAGAACCTCTTGGCTGAATTTTCCTGCCC
AAGGAAGCACAGCTCCAGGATACAAGAAGAAATGGCTGCACCCCTGCACCCCTTTTCACACCTG
TGAAATTACACTGGAGGCAGGGGCTCAGAGGCAAGGTGACTAATAGGAGTGTGGCTGTTTTCTT
CAAGGTTGGAAACACCACCTAGAGACATTGGTCTGGCTGGTGATGCTGGGAAGAAGCCAATGGA
AAAGACAGGGGAGAGATGGTGGGAAGAAGAGGAATTCTGGGAAAGCTCTAAGCCACGGGCTTGC
GGGGGGGGGGGGGTACAGGGCTCCCATCTCTGGTGATCTTGGTCTTTCTGTATCCGATTGAGCT
GTGCCTTGCACATGTGCTCCGCTGATGTTCGTATTTCGGTCTTGTCTCCGCCGTTACACTGGGA
TCTGGGTTACCCAGTGCCTGGTTTATCCTCAGTGTCACTGCCCCGGGACTAGGTGCAGATCCAT
GTCTTGGTACCCATCTGTCTGACATTGACAATGACCTGCATGGAAAGAAAAAACAAATCTGGTT
TGGCAGGTTTAAAATAAATATTATGAAAGTCTGAA

hide sequence

RefSeq Acc Id:

XM_008759135 ⟹ XP_008757357

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	89,268,197 - 89,271,372 (-)	NCBI

Sequence:

show sequence

CTGACCTGCTAGACATTGCTAGAAGAAACAGATGAGAAGACAGAAAAGCGTCTGACAAGGGGAT
CCACAGCCCTGGACCAGAGGAGAACCAGGTGGAAGAAACCCCTGAACTTGCCCAAGGAGAATGA
CCCCAGACTGGCACAGTTCCTTGATCCTCACGGCCTACATCCTCATCTTTCTTACTGGGCTCCC
TGCCAACCTGCTGGCCCTGCGGGCCTTCGTGAGCCGGGTTCGCCAGCCCCAGCCTGCACCCGTG
CACATCCTCCTGCTTAATCTGACCCTGGCGGACTTGCTGTTGTTGCTGCTGCTGCCCTTCCGGA
TCGTGGAAGCTGCATCCAACTTCCGCTGGTACCTACCAAAGATCGTGTGCGCGCTCACGGGCTT
CGGCTTCTACAGCAGTATCTACTGCAGCACGTGGCTGCTGGCGGGCATCAGCATAGAACGCTAC
CTGGGAGTGGCTTTCCCGGTGCAGTACAAGCTATCCCGCCGGCCACTGTACGGAGTGATCGCTG
CTCTGGTGGCCTGGATCATGTCCTTTGGCCATTGCACCATCGTCATCATCGTTCAGTACCTGAA
CTCAACCGAGCAGGTGGGCACCGAGAACCAAATCACCTGCTATGAGAACTTCACCCAAGCGCAG
CTGGATGTGGTGCTGCCCGTGCGACTGGAGCTGTGCCTGGTCCTCTTTTTCGTCCCCATGACAG
TCACCATCTTCTGCTATTGGCGCTTTGTGTGGATCATGCTCACACAGCCCCATGTTGGGGCTCA
GAGGCGACGCCGGGCGGTGGGCCTGGCTGTGGTGACGCTTCTTAATTTCCTGGTGTGCTTTGGA
CCTTACAACATGTCCCACCTGGTGGGGTTCCACTTGAGGCAGAGTCCCTCGTGGCGGGTGGAGG
CTGTGGTGTTCAGTTCCCTCAATGCCAGCCTGGACCCTCTGCTATTCTACTTCTCCTCCTCCGT
GGTACGCAGGGCCTTCGGGAAAGGTTTGCTACTACTCCGCAATCCCGGCTCCTCTATGCTGGGC
AGGGGAGCCGAAGAGACAGTGGAGGGGACCAAGACAGACAGGGGTGGGAGTCAAACAGAAGGGG
CACAGAGCTCTGACTTTGTCACCGAGTGAGTATAGAGTCGCCCGGATCTTCCCGAGCGTCTAGG
TCACTCAGAAGTTGGGCTGGTTAGCAGAGCTCCTGAGACTTGGTAAAAGATAAAAGGTTATAAA
AAAAAGAAAGACACCCCTTCACACACACACACACCCCACCCCTTTGCCACTGTTCTCTCGGATC
TGCAGAACCTCTTGGCTGAATTTTCCTGCCCAAGGAAGCACAGCTCCAGGATACAAGAAGAAAT
GGCTGCACCCCTGCACCCCTTTTCACACCTGTGAAATTACACTGGAGGCAGGGGCTCAGAGGCA
AGGTGACTAATAGGAGTGTGGCTGTTTTCTTCAAGGTTGGAAACACCACCTAGAGACATTGGTC
TGGCTGGTGATGCTGGGAAGAAGCCAATGGAAAAGACAGGGGAGAGATGGTGGGAAGAAGAGGA
ATTCTGGGAAAGCTCTAAGCCACGGGCTTGCGGGGGGGGGGGGGTACAGGGCTCCCATCTCTGG
TGATCTTGGTCTTTCTGTATCCGATTGAGCTGTGCCTTGCACATGTGCTCCGCTGATGTTCGTA
TTTCGGTCTTGTCTCCGCCGTTACACTGGGATCTGGGTTACCCAGTGCCTGGTTTATCCTCAGT
GTCACTGCCCCGGGACTAGGTGCAGATCCATGTCTTGGTACCCATCTGTCTGACATTGACAATG
ACCTGCATGGAAAGAAAAAACAAATCTGGTTTGGCAGGTTTAAAATAAATATTATGAAAGTCTG
AA

hide sequence

RefSeq Acc Id:

XM_017588913 ⟹ XP_017444402

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	89,268,197 - 89,271,942 (-)	NCBI

Sequence:

show sequence

CATCTAACACCGAGGAGCTAAGGACATGGAGAGAACAAGGGTTGGGGGAGAAGAGTAAGAGGTG
AGGAGTGTTTCTGAGTGTGCAGCCCTTCTGAGAGCAGCCGCGGGGACCCCTCACAGGGAGCGAG
CCTCCCTGTCTGTCATCTGTAGCCCAGCTGGCCTTAGCCTGCAGAGTAGCCAGGATTCAGGCCT
ATGGCCCCACTCCCAGCTCTTACCTTCTAGGAAGGTGCCTGACGCTTGAGGGAAGGACACACCC
CCCCACCCTGATGCTCATGCCTTTAGCCTCACTGGATCACCCTGGGGGTGCAGTGCTGTTAGGA
TTCCCATGCTGGTTTGCAGGAGGAAAGGAAAGTTCATAAAACCAAATCTGACCCAAAGTTCCCA
GTGCAGAGGCTTGGACGGCAGCCCACAGCGGCCCGACTGTGCACTGAAAACAAGACACGAGCTA
GGGAAAGCCGGTCTGTCCCAACTTCAAGGCCGAAGGAGATTTGGGGTGGACAACAGGAGACTAC
AAGGAAGTTAGACAAGGGAGGAATCAAAAAAACGGGAAGCCTCGTTCTGAGGGATCCACAGCCC
TGGACCAGAGGAGAACCAGGTGGAAGAAACCCCTGAACTTGCCCAAGGAGAATGACCCCAGACT
GGCACAGTTCCTTGATCCTCACGGCCTACATCCTCATCTTTCTTACTGGGCTCCCTGCCAACCT
GCTGGCCCTGCGGGCCTTCGTGAGCCGGGTTCGCCAGCCCCAGCCTGCACCCGTGCACATCCTC
CTGCTTAATCTGACCCTGGCGGACTTGCTGTTGTTGCTGCTGCTGCCCTTCCGGATCGTGGAAG
CTGCATCCAACTTCCGCTGGTACCTACCAAAGATCGTGTGCGCGCTCACGGGCTTCGGCTTCTA
CAGCAGTATCTACTGCAGCACGTGGCTGCTGGCGGGCATCAGCATAGAACGCTACCTGGGAGTG
GCTTTCCCGGTGCAGTACAAGCTATCCCGCCGGCCACTGTACGGAGTGATCGCTGCTCTGGTGG
CCTGGATCATGTCCTTTGGCCATTGCACCATCGTCATCATCGTTCAGTACCTGAACTCAACCGA
GCAGGTGGGCACCGAGAACCAAATCACCTGCTATGAGAACTTCACCCAAGCGCAGCTGGATGTG
GTGCTGCCCGTGCGACTGGAGCTGTGCCTGGTCCTCTTTTTCGTCCCCATGACAGTCACCATCT
TCTGCTATTGGCGCTTTGTGTGGATCATGCTCACACAGCCCCATGTTGGGGCTCAGAGGCGACG
CCGGGCGGTGGGCCTGGCTGTGGTGACGCTTCTTAATTTCCTGGTGTGCTTTGGACCTTACAAC
ATGTCCCACCTGGTGGGGTTCCACTTGAGGCAGAGTCCCTCGTGGCGGGTGGAGGCTGTGGTGT
TCAGTTCCCTCAATGCCAGCCTGGACCCTCTGCTATTCTACTTCTCCTCCTCCGTGGTACGCAG
GGCCTTCGGGAAAGGTTTGCTACTACTCCGCAATCCCGGCTCCTCTATGCTGGGCAGGGGAGCC
GAAGAGACAGTGGAGGGGACCAAGACAGACAGGGGTGGGAGTCAAACAGAAGGGGCACAGAGCT
CTGACTTTGTCACCGAGTGAGTATAGAGTCGCCCGGATCTTCCCGAGCGTCTAGGTCACTCAGA
AGTTGGGCTGGTTAGCAGAGCTCCTGAGACTTGGTAAAAGATAAAAGGTTATAAAAAAAAGAAA
GACACCCCTTCACACACACACACACCCCACCCCTTTGCCACTGTTCTCTCGGATCTGCAGAACC
TCTTGGCTGAATTTTCCTGCCCAAGGAAGCACAGCTCCAGGATACAAGAAGAAATGGCTGCACC
CCTGCACCCCTTTTCACACCTGTGAAATTACACTGGAGGCAGGGGCTCAGAGGCAAGGTGACTA
ATAGGAGTGTGGCTGTTTTCTTCAAGGTTGGAAACACCACCTAGAGACATTGGTCTGGCTGGTG
ATGCTGGGAAGAAGCCAATGGAAAAGACAGGGGAGAGATGGTGGGAAGAAGAGGAATTCTGGGA
AAGCTCTAAGCCACGGGCTTGCGGGGGGGGGGGGGTACAGGGCTCCCATCTCTGGTGATCTTGG
TCTTTCTGTATCCGATTGAGCTGTGCCTTGCACATGTGCTCCGCTGATGTTCGTATTTCGGTCT
TGTCTCCGCCGTTACACTGGGATCTGGGTTACCCAGTGCCTGGTTTATCCTCAGTGTCACTGCC
CCGGGACTAGGTGCAGATCCATGTCTTGGTACCCATCTGTCTGACATTGACAATGACCTGCATG
GAAAGAAAAAACAAATCTGGTTTGGCAGGTTTAAAATAAATATTATGAAAGTCTGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001005877	(Get FASTA)	NCBI Sequence Viewer
	XP_006228884	(Get FASTA)	NCBI Sequence Viewer
	XP_008757355	(Get FASTA)	NCBI Sequence Viewer
	XP_008757356	(Get FASTA)	NCBI Sequence Viewer
	XP_008757357	(Get FASTA)	NCBI Sequence Viewer
	XP_017444402	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAD02826	(Get FASTA)	NCBI Sequence Viewer
	EDM07706	(Get FASTA)	NCBI Sequence Viewer
	EDM07707	(Get FASTA)	NCBI Sequence Viewer
	Q76EI6	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001005877 ⟸ NM_001005877

- UniProtKB:

Q76EI6 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MTPDWHSSLILTAYILIFLTGLPANLLALRAFVSRVRQPQPAPVHILLLNLTLADLLLLLLLPF
RIVEAASNFRWYLPKIVCALTGFGFYSSIYCSTWLLAGISIERYLGVAFPVQYKLSRRPLYGVI
AALVAWIMSFGHCTIVIIVQYLNSTEQVGTENQITCYENFTQAQLDVVLPVRLELCLVLFFVPM
TVTIFCYWRFVWIMLTQPHVGAQRRRRAVGLAVVTLLNFLVCFGPYNMSHLVGFHLRQSPSWRV
EAVVFSSLNASLDPLLFYFSSSVVRRAFGKGLLLLRNPGSSMLGRGAEETVEGTKTDRGGSQTE
GAQSSDFVTE

hide sequence

RefSeq Acc Id:	XP_006228884 ⟸ XM_006228822
- Peptide Label:	isoform X1
- UniProtKB:	Q76EI6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTPDWHSSLILTAYILIFLTGLPANLLALRAFVSRVRQPQPAPVHILLLNLTLADLLLLLLLPF RIVEAASNFRWYLPKIVCALTGFGFYSSIYCSTWLLAGISIERYLGVAFPVQYKLSRRPLYGVI AALVAWIMSFGHCTIVIIVQYLNSTEQVGTENQITCYENFTQAQLDVVLPVRLELCLVLFFVPM TVTIFCYWRFVWIMLTQPHVGAQRRRRAVGLAVVTLLNFLVCFGPYNMSHLVGFHLRQSPSWRV EAVVFSSLNASLDPLLFYFSSSVVRRAFGKGLLLLRNPGSSMLGRGAEETVEGTKTDRGGSQTE GAQSSDFVTE hide sequence

RefSeq Acc Id:	XP_008757357 ⟸ XM_008759135
- Peptide Label:	isoform X1
- UniProtKB:	Q76EI6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTPDWHSSLILTAYILIFLTGLPANLLALRAFVSRVRQPQPAPVHILLLNLTLADLLLLLLLPF RIVEAASNFRWYLPKIVCALTGFGFYSSIYCSTWLLAGISIERYLGVAFPVQYKLSRRPLYGVI AALVAWIMSFGHCTIVIIVQYLNSTEQVGTENQITCYENFTQAQLDVVLPVRLELCLVLFFVPM TVTIFCYWRFVWIMLTQPHVGAQRRRRAVGLAVVTLLNFLVCFGPYNMSHLVGFHLRQSPSWRV EAVVFSSLNASLDPLLFYFSSSVVRRAFGKGLLLLRNPGSSMLGRGAEETVEGTKTDRGGSQTE GAQSSDFVTE hide sequence

RefSeq Acc Id:	XP_008757356 ⟸ XM_008759134
- Peptide Label:	isoform X1
- UniProtKB:	Q76EI6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTPDWHSSLILTAYILIFLTGLPANLLALRAFVSRVRQPQPAPVHILLLNLTLADLLLLLLLPF RIVEAASNFRWYLPKIVCALTGFGFYSSIYCSTWLLAGISIERYLGVAFPVQYKLSRRPLYGVI AALVAWIMSFGHCTIVIIVQYLNSTEQVGTENQITCYENFTQAQLDVVLPVRLELCLVLFFVPM TVTIFCYWRFVWIMLTQPHVGAQRRRRAVGLAVVTLLNFLVCFGPYNMSHLVGFHLRQSPSWRV EAVVFSSLNASLDPLLFYFSSSVVRRAFGKGLLLLRNPGSSMLGRGAEETVEGTKTDRGGSQTE GAQSSDFVTE hide sequence

RefSeq Acc Id:	XP_008757355 ⟸ XM_008759133
- Peptide Label:	isoform X1
- UniProtKB:	Q76EI6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTPDWHSSLILTAYILIFLTGLPANLLALRAFVSRVRQPQPAPVHILLLNLTLADLLLLLLLPF RIVEAASNFRWYLPKIVCALTGFGFYSSIYCSTWLLAGISIERYLGVAFPVQYKLSRRPLYGVI AALVAWIMSFGHCTIVIIVQYLNSTEQVGTENQITCYENFTQAQLDVVLPVRLELCLVLFFVPM TVTIFCYWRFVWIMLTQPHVGAQRRRRAVGLAVVTLLNFLVCFGPYNMSHLVGFHLRQSPSWRV EAVVFSSLNASLDPLLFYFSSSVVRRAFGKGLLLLRNPGSSMLGRGAEETVEGTKTDRGGSQTE GAQSSDFVTE hide sequence

RefSeq Acc Id:	XP_017444402 ⟸ XM_017588913
- Peptide Label:	isoform X1
- UniProtKB:	Q76EI6 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MTPDWHSSLILTAYILIFLTGLPANLLALRAFVSRVRQPQPAPVHILLLNLTLADLLLLLLLPF RIVEAASNFRWYLPKIVCALTGFGFYSSIYCSTWLLAGISIERYLGVAFPVQYKLSRRPLYGVI AALVAWIMSFGHCTIVIIVQYLNSTEQVGTENQITCYENFTQAQLDVVLPVRLELCLVLFFVPM TVTIFCYWRFVWIMLTQPHVGAQRRRRAVGLAVVTLLNFLVCFGPYNMSHLVGFHLRQSPSWRV EAVVFSSLNASLDPLLFYFSSSVVRRAFGKGLLLLRNPGSSMLGRGAEETVEGTKTDRGGSQTE GAQSSDFVTE hide sequence

RefSeq Acc Id:

ENSRNOP00000028532 ⟸ ENSRNOT00000028532

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359614	AgrOrtholog
Ensembl Genes	ENSRNOG00000021021	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000028532	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000028532	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	GPCR_Rhodpsn	UniProtKB/Swiss-Prot
	GPCR_Rhodpsn_7TM	UniProtKB/Swiss-Prot
	GPR40-rel_orph	UniProtKB/Swiss-Prot
KEGG Report	rno:292794	UniProtKB/Swiss-Prot
NCBI Gene	292794	ENTREZGENE
Pfam	7tm_1	UniProtKB/Swiss-Prot
PharmGKB	FFAR2	RGD
PhenoGen	Ffar2	PhenoGen
PRINTS	GPCRRHODOPSN	UniProtKB/Swiss-Prot
	GPR40FAMILY	UniProtKB/Swiss-Prot
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/Swiss-Prot
	G_PROTEIN_RECEP_F1_2	UniProtKB/Swiss-Prot
UniProt	FFAR2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Ffar2	free fatty acid receptor 2	Gpr43	G protein-coupled receptor 43	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	Gpr43	G protein-coupled receptor 43			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar