Pepd (peptidase D) - Rat Genome Database

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Gene: Pepd (peptidase D) Rattus norvegicus
Analyze
Symbol: Pepd
Name: peptidase D
RGD ID: 1594571
Description: Predicted to enable peptidase activity. Predicted to be involved in collagen catabolic process and proteolysis. Human ortholog(s) of this gene implicated in prolidase deficiency. Orthologous to human PEPD (peptidase D); INTERACTS WITH 2,4-dinitrotoluene; acetamide; bis(2-ethylhexyl) phthalate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: imidodipeptidase; LOC103690062; MGC95081; Pepd_mapped; peptidase D (mapped); prolidase; proline dipeptidase; X-Pro dipeptidase; xaa-Pro dipeptidase; xaa-Pro dipeptidase-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2187,536,650 - 87,681,233 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,536,609 - 87,681,231 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx192,940,383 - 93,078,987 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01101,406,381 - 101,544,973 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0194,698,696 - 94,837,286 (+)NCBIRnor_WKY
Rnor_6.0190,820,670 - 91,285,128 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0192,392,882 - 92,416,063 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0191,925,878 - 91,947,641 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0191,957,678 - 92,027,178 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,421,576 - 87,547,908 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera181,897,703 - 82,034,192 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
acetamide  (EXP)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
aristolochic acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cyproconazole  (ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (ISO)
diisopropyl fluorophosphate  (ISO)
diuron  (EXP)
edaravone  (EXP)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
folic acid  (ISO)
genistein  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
L-ascorbic acid  (ISO)
linsidomine  (ISO)
melanins  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methylparaben  (ISO)
microcystin-LR  (ISO)
monosodium L-glutamate  (ISO)
N,N-diethyl-m-toluamide  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (EXP)
ozone  (ISO)
p-toluidine  (EXP)
paracetamol  (ISO)
phenacetin  (ISO)
phenobarbital  (ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
sarin  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
Sodium salicylate  (ISO)
Soman  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
VX nerve agent  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Structural organization of the gene for human prolidase (peptidase D) and demonstration of a partial gene deletion in a patient with prolidase deficiency. Tanoue A, etal., J Biol Chem 1990 Jul 5;265(19):11306-11.
Additional References at PubMed
PMID:4187938   PMID:12477932   PMID:19056867   PMID:19782660   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
Pepd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2187,536,650 - 87,681,233 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,536,609 - 87,681,231 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx192,940,383 - 93,078,987 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01101,406,381 - 101,544,973 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0194,698,696 - 94,837,286 (+)NCBIRnor_WKY
Rnor_6.0190,820,670 - 91,285,128 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0192,392,882 - 92,416,063 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0191,925,878 - 91,947,641 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0191,957,678 - 92,027,178 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,421,576 - 87,547,908 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera181,897,703 - 82,034,192 (+)NCBICelera
Cytogenetic Map1q21NCBI
PEPD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381933,386,950 - 33,521,791 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1933,386,950 - 33,521,823 (-)EnsemblGRCh38hg38GRCh38
GRCh371933,877,856 - 34,012,697 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361938,569,701 - 38,704,641 (-)NCBINCBI36Build 36hg18NCBI36
Build 341938,569,698 - 38,704,522NCBI
Celera1930,571,427 - 30,706,398 (-)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1930,378,491 - 30,405,183 (-)NCBIHuRef
HuRef1930,454,304 - 30,512,607 (-)NCBIHuRef
CHM1_11933,878,802 - 34,013,898 (-)NCBICHM1_1
T2T-CHM13v2.01935,906,727 - 36,042,546 (-)NCBIT2T-CHM13v2.0
Pepd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39734,611,832 - 34,744,133 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl734,611,804 - 34,744,133 (+)EnsemblGRCm39 Ensembl
GRCm38734,912,407 - 35,044,708 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl734,912,379 - 35,044,708 (+)EnsemblGRCm38mm10GRCm38
MGSCv37735,697,426 - 35,829,727 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36734,615,661 - 34,753,468 (+)NCBIMGSCv36mm8
Celera730,044,756 - 30,180,582 (+)NCBICelera
Cytogenetic Map7B2NCBI
cM Map720.7NCBI
Pepd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,146,521 - 3,277,294 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554683,147,871 - 3,277,294 (-)NCBIChiLan1.0ChiLan1.0
PEPD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11939,053,917 - 39,193,991 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1939,053,917 - 39,193,991 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01930,309,243 - 30,450,279 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PEPD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,662,560 - 118,773,193 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,662,626 - 118,773,153 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,064,464 - 118,174,177 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,262,216 - 119,371,684 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,262,261 - 119,371,682 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11118,822,660 - 118,932,372 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,449,147 - 118,558,880 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,508,173 - 119,617,551 (+)NCBIUU_Cfam_GSD_1.0
Pepd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093499,214,005 - 9,329,959 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365702,315,981 - 2,431,878 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEPD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl643,177,062 - 43,290,369 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1643,177,063 - 43,290,389 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,845,166 - 38,936,198 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PEPD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1628,427,940 - 28,562,554 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl628,427,912 - 28,553,316 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660736,152,349 - 6,294,720 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pepd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247949,602,487 - 9,724,260 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247949,602,497 - 9,724,260 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D1Rat189  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,580,395 - 87,580,595 (+)MAPPERmRatBN7.2
Rnor_6.0190,864,415 - 90,864,614NCBIRnor6.0
Rnor_6.0190,804,143 - 90,804,342NCBIRnor6.0
Rnor_5.0191,941,720 - 91,941,919UniSTSRnor5.0
Rnor_5.0192,001,423 - 92,001,622UniSTSRnor5.0
RGSC_v3.4187,465,281 - 87,465,704RGDRGSC3.4
RGSC_v3.4187,465,286 - 87,465,485UniSTSRGSC3.4
RGSC_v3.1187,543,397 - 87,543,596RGD
Celera181,937,065 - 81,937,264UniSTS
RH 3.4 Map1860.1UniSTS
RH 3.4 Map1860.1RGD
RH 2.0 Map1546.6RGD
SHRSP x BN Map143.3699RGD
FHH x ACI Map146.2899RGD
Cytogenetic Map1q21UniSTS
D1Got92  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,568,540 - 87,568,702 (+)MAPPERmRatBN7.2
Rnor_6.0190,852,562 - 90,852,723NCBIRnor6.0
Rnor_6.0190,792,290 - 90,792,451NCBIRnor6.0
Rnor_5.0191,989,570 - 91,989,731UniSTSRnor5.0
Rnor_5.0191,929,867 - 91,930,028UniSTSRnor5.0
RGSC_v3.4187,453,433 - 87,453,594UniSTSRGSC3.4
RGSC_v3.4187,453,434 - 87,453,594RGDRGSC3.4
RGSC_v3.1187,531,545 - 87,531,705RGD
RH 3.4 Map1824.6UniSTS
RH 3.4 Map1824.6RGD
RH 2.0 Map1526.6RGD
Cytogenetic Map1q21UniSTS
D1Got263  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,568,541 - 87,568,681 (+)MAPPERmRatBN7.2
Rnor_6.0190,852,563 - 90,852,702NCBIRnor6.0
Rnor_6.0190,792,291 - 90,792,430NCBIRnor6.0
Rnor_5.0191,989,571 - 91,989,710UniSTSRnor5.0
Rnor_5.0191,929,868 - 91,930,007UniSTSRnor5.0
RGSC_v3.4187,453,434 - 87,453,573RGDRGSC3.4
RGSC_v3.4187,453,434 - 87,453,573UniSTSRGSC3.4
RGSC_v3.1187,531,545 - 87,531,684RGD
Cytogenetic Map1q21UniSTS
AU048004  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,580,381 - 87,580,577 (+)MAPPERmRatBN7.2
Rnor_6.0190,864,401 - 90,864,596NCBIRnor6.0
Rnor_6.0190,804,129 - 90,804,324NCBIRnor6.0
Rnor_5.0191,941,706 - 91,941,901UniSTSRnor5.0
Rnor_5.0192,001,409 - 92,001,604UniSTSRnor5.0
RGSC_v3.4187,465,272 - 87,465,467UniSTSRGSC3.4
Celera181,937,051 - 81,937,246UniSTS
Cytogenetic Map1q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:32
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000028701
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000077404   ⟹   ENSRNOP00000095277
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl187,536,609 - 87,681,231 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118764   ⟹   ENSRNOP00000085744
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl187,545,016 - 87,681,231 (+)Ensembl
RefSeq Acc Id: NM_001009641   ⟹   NP_001009641
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2187,536,650 - 87,681,233 (+)NCBI
Rnor_6.0190,820,670 - 91,285,128 (+)NCBI
Rnor_5.0191,957,678 - 92,027,178 (+)NCBI
Rnor_5.0192,392,882 - 92,416,063 (+)NCBI
RGSC_v3.4187,421,576 - 87,547,908 (+)RGD
Celera181,897,703 - 82,034,192 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001009641 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88440 (Get FASTA)   NCBI Sequence Viewer  
  EDM07635 (Get FASTA)   NCBI Sequence Viewer  
  Q5I0D7 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001009641   ⟸   NM_001009641
- UniProtKB: Q5I0D7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000095277   ⟸   ENSRNOT00000077404
RefSeq Acc Id: ENSRNOP00000085744   ⟸   ENSRNOT00000118764
Protein Domains
AMP_N

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5I0D7-F1-model_v2 AlphaFold Q5I0D7 1-492 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594571 AgrOrtholog
BioCyc Gene G2FUF-59999 BioCyc
Ensembl Genes ENSRNOG00000052945 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000085744.1 UniProtKB/TrEMBL
  ENSRNOP00000095277 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000077404 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000118764.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.350.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.90.230.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7126171 IMAGE-MGC_LOAD
InterPro Aminopep_P_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Creatin/AminoP/Spt16_NTD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Creatinase/aminopeptidase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_M24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_M24B_aminopep-P_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:292808 UniProtKB/Swiss-Prot
MGC_CLONE MGC:95081 IMAGE-MGC_LOAD
NCBI Gene 292808 ENTREZGENE
Pfam AMP_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_M24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pepd PhenoGen
PROSITE PROLINE_PEPTIDASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AMP_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53092 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A0W2_RAT UniProtKB/TrEMBL
  PEPD_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Pepd  peptidase D  LOC103690062  xaa-Pro dipeptidase-like  Data Merged 737654 PROVISIONAL
2014-08-25 LOC103690062  xaa-Pro dipeptidase-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2007-04-13   peptidase D  Pepd  peptidase D (mapped)  Name updated 737654 APPROVED
2007-04-11 Pepd  peptidase D (mapped)  Pepd_mapped  peptidase D (mapped)  Data Merged 737654 APPROVED
2006-11-20 Pepd  peptidase D (mapped)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-11-17 Pepd_mapped  peptidase D (mapped)      Symbol and Name updated 1556543 APPROVED
2002-11-06 Pepd  peptidase D    Peptidase D  Name updated 625702 APPROVED
2002-06-10 Pepd  Peptidase D      Symbol and Name status set to approved 70586 APPROVED