Tyrobp (transmembrane immune signaling adaptor Tyrobp) - Rat Genome Database

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Gene: Tyrobp (transmembrane immune signaling adaptor Tyrobp) Rattus norvegicus
Analyze
Symbol: Tyrobp
Name: transmembrane immune signaling adaptor Tyrobp
RGD ID: 1303081
Description: Predicted to enable molecular adaptor activity; protein homodimerization activity; and signaling receptor binding activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; myeloid cell activation involved in immune response; and regulation of cytokine production. Predicted to act upstream of or within osteoclast differentiation and regulation of osteoclast development. Predicted to be located in plasma membrane. Predicted to be active in cell surface. Biomarker of rheumatoid arthritis. Human ortholog(s) of this gene implicated in Nasu-Hakola disease. Orthologous to human TYROBP (transmembrane immune signaling adaptor TYROBP); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DAP12; DNAX-activation protein 12; Karap; killer cell activating receptor-associated protein; LOC361537; Tyro protein tyrosine kinase binding protein; TYRO protein tyrosine kinase-binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,800,372 - 94,804,307 (+)NCBIGRCr8
mRatBN7.2185,672,931 - 85,676,856 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,672,994 - 85,676,848 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,088,757 - 91,092,672 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,556,044 - 99,559,908 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,847,020 - 92,850,937 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0188,875,370 - 88,879,305 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl188,875,375 - 88,879,303 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,031,123 - 90,034,976 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,365,371 - 85,369,224 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,443,481 - 85,447,330 (+)NCBI
Celera180,045,174 - 80,049,027 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2-butoxyethanol  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
bathocuproine disulfonic acid  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
curcumin  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
dibenz[a,h]anthracene  (ISO)
dibenzo[a,l]pyrene  (ISO)
diclofenac  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP,ISO)
diquat  (ISO)
entinostat  (ISO)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
genistein  (ISO)
gentamycin  (EXP)
ionomycin  (ISO)
irinotecan  (ISO)
kainic acid  (ISO)
L-methionine  (ISO)
lidocaine  (EXP)
lipopolysaccharide  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
pyrrolidine dithiocarbamate  (ISO)
resveratrol  (EXP)
rotenone  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
streptozocin  (EXP)
sulforaphane  (ISO)
tamibarotene  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trimellitic acid  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin cytoskeleton organization  (ISO)
apoptotic cell clearance  (ISO,ISS)
forebrain development  (ISO)
integrin-mediated signaling pathway  (ISO)
macrophage activation involved in immune response  (ISO)
microglial cell activation involved in immune response  (IBA,ISO)
myeloid leukocyte activation  (ISO)
negative regulation of B cell proliferation  (IBA,ISO)
negative regulation of interleukin-10 production  (ISO)
negative regulation of long-term synaptic potentiation  (ISO)
negative regulation of transforming growth factor beta1 production  (IBA,ISO)
negative regulation of type I interferon production  (ISO)
neutrophil activation involved in immune response  (IBA,ISO)
osteoclast differentiation  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of interleukin-1 beta production  (ISO)
positive regulation of interleukin-6 production  (ISO)
positive regulation of macrophage fusion  (IBA,ISO)
positive regulation of microglial cell mediated cytotoxicity  (IBA,ISO)
positive regulation of natural killer cell activation  (IBA,ISO)
positive regulation of osteoclast development  (ISO)
positive regulation of protein localization to cell surface  (ISO)
positive regulation of receptor localization to synapse  (ISO)
positive regulation of superoxide anion generation  (ISO)
positive regulation of tumor necrosis factor production  (ISO)
protein stabilization  (ISO)
regulation of osteoclast development  (ISO)
response to axon injury  (ISO)
stimulatory C-type lectin receptor signaling pathway  (ISO,ISS)
stimulatory killer cell immunoglobulin-like receptor signaling pathway  (ISO,ISS)

Cellular Component
cell surface  (IBA,ISO,ISS)
plasma membrane  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Triptolide Modulates TREM-1 Signal Pathway to Inhibit the Inflammatory Response in Rheumatoid Arthritis. Fan D, etal., Int J Mol Sci. 2016 Apr 2;17(4):498. doi: 10.3390/ijms17040498.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Ly-49s3 is a promiscuous activating rat NK cell receptor for nonclassical MHC class I-encoded target ligands. Naper C, etal., J Immunol 2002 Jul 1;169(1):22-30.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Gene structure, expression pattern, and biological activity of mouse killer cell activating receptor-associated protein (KARAP)/DAP-12. Tomasello E, etal., J Biol Chem 1998 Dec 18;273(51):34115-9.
Additional References at PubMed
PMID:9647200   PMID:10604985   PMID:11602640   PMID:14969392   PMID:15294961   PMID:15601948   PMID:15728241   PMID:17086186   PMID:18685038   PMID:18691974   PMID:18957693   PMID:20890284  
PMID:21727189   PMID:21841309   PMID:22084441   PMID:22451653   PMID:23715743   PMID:25690660   PMID:25957402   PMID:29518356  


Genomics

Comparative Map Data
Tyrobp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,800,372 - 94,804,307 (+)NCBIGRCr8
mRatBN7.2185,672,931 - 85,676,856 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,672,994 - 85,676,848 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,088,757 - 91,092,672 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,556,044 - 99,559,908 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,847,020 - 92,850,937 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0188,875,370 - 88,879,305 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl188,875,375 - 88,879,303 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,031,123 - 90,034,976 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,365,371 - 85,369,224 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,443,481 - 85,447,330 (+)NCBI
Celera180,045,174 - 80,049,027 (+)NCBICelera
Cytogenetic Map1q21NCBI
TYROBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,904,403 - 35,908,295 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,904,401 - 35,908,295 (-)EnsemblGRCh38hg38GRCh38
GRCh371936,395,305 - 36,399,197 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361941,087,143 - 41,091,026 (-)NCBINCBI36Build 36hg18NCBI36
Build 341941,087,143 - 41,091,026NCBI
Celera1933,109,494 - 33,113,402 (-)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,900,548 - 32,904,456 (-)NCBIHuRef
CHM1_11936,396,596 - 36,400,504 (-)NCBICHM1_1
T2T-CHM13v2.01938,450,168 - 38,454,060 (-)NCBIT2T-CHM13v2.0
Tyrobp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,113,207 - 30,117,007 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,113,185 - 30,117,010 (+)EnsemblGRCm39 Ensembl
GRCm38730,413,782 - 30,417,582 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,413,760 - 30,417,585 (+)EnsemblGRCm38mm10GRCm38
MGSCv37731,198,807 - 31,202,601 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,122,548 - 30,126,342 (+)NCBIMGSCv36mm8
Celera725,005,487 - 25,009,294 (+)NCBICelera
Cytogenetic Map7B1NCBI
cM Map717.45NCBI
Tyrobp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,673,980 - 2,677,321 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,673,657 - 2,677,633 (+)NCBIChiLan1.0ChiLan1.0
TYROBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,902,807 - 41,907,241 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,887,571 - 43,891,929 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,821,279 - 32,825,488 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,570,674 - 41,575,226 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,570,683 - 41,575,226 (-)Ensemblpanpan1.1panPan2
TYROBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,757,271 - 116,760,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,757,289 - 116,772,325 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,162,854 - 116,166,018 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,360,454 - 117,363,633 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,359,870 - 117,363,633 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11116,924,025 - 116,927,189 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,547,561 - 116,550,722 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,603,321 - 117,606,485 (+)NCBIUU_Cfam_GSD_1.0
Tyrobp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,185,145 - 11,187,925 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936570458,054 - 460,579 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936570457,993 - 460,735 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TYROBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,309,201 - 45,312,539 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,309,199 - 45,312,562 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,711,873 - 40,716,395 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TYROBP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,816,675 - 30,820,816 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,816,678 - 30,820,597 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660738,609,470 - 8,613,375 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tyrobp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479410,183,515 - 10,187,244 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479410,183,934 - 10,187,180 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tyrobp
28 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:71
Interacting mature miRNAs:72
Transcripts:ENSRNOT00000028284
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 25 53 39 19 39 44 27 30 11
Low 18 4 2 2 8 11 30 8 11 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000028284   ⟹   ENSRNOP00000028284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,672,994 - 85,676,848 (+)Ensembl
Rnor_6.0 Ensembl188,875,375 - 88,879,303 (+)Ensembl
RefSeq Acc Id: NM_212525   ⟹   NP_997690
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,800,451 - 94,804,304 (+)NCBI
mRatBN7.2185,673,000 - 85,676,853 (+)NCBI
Rnor_6.0188,875,449 - 88,879,302 (+)NCBI
Rnor_5.0190,031,123 - 90,034,976 (+)NCBI
RGSC_v3.4185,365,371 - 85,369,224 (+)RGD
Celera180,045,174 - 80,049,027 (+)RGD
Sequence:
RefSeq Acc Id: XM_008759166   ⟹   XP_008757388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8194,800,372 - 94,804,307 (+)NCBI
mRatBN7.2185,672,931 - 85,676,856 (+)NCBI
Rnor_6.0188,875,370 - 88,879,305 (+)NCBI
Sequence:
RefSeq Acc Id: NP_997690   ⟸   NM_212525
- Peptide Label: precursor
- UniProtKB: Q6X9T7 (UniProtKB/Swiss-Prot),   A6J9W9 (UniProtKB/TrEMBL),   A6J9W8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008757388   ⟸   XM_008759166
- Peptide Label: isoform X1
- UniProtKB: A6J9W8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000028284   ⟸   ENSRNOT00000028284
Protein Domains
ITAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6X9T7-F1-model_v2 AlphaFold Q6X9T7 1-114 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689912
Promoter ID:EPDNEW_R437
Type:initiation region
Name:Tyrobp_1
Description:Tyro protein tyrosine kinase binding protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0188,875,440 - 88,875,500EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303081 AgrOrtholog
BioCyc Gene G2FUF-60113 BioCyc
Ensembl Genes ENSRNOG00000020845 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055031150 UniProtKB/Swiss-Prot
  ENSRNOG00060029543 UniProtKB/Swiss-Prot
  ENSRNOG00065031519 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000028284 ENTREZGENE
  ENSRNOT00000028284.7 UniProtKB/Swiss-Prot
  ENSRNOT00055054024 UniProtKB/Swiss-Prot
  ENSRNOT00060051281 UniProtKB/Swiss-Prot
  ENSRNOT00065054313 UniProtKB/Swiss-Prot
Gene3D-CATH YojJ-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Tyrobp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361537 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 361537 ENTREZGENE
PANTHER PTHR17554 UniProtKB/Swiss-Prot
  TYRO PROTEIN TYROSINE KINASE-BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYRO PROTEIN TYROSINE KINASE-BINDING PROTEIN UniProtKB/TrEMBL
PharmGKB TYROBP RGD
PhenoGen Tyrobp PhenoGen
RatGTEx ENSRNOG00000020845 RatGTEx
  ENSRNOG00055031150 RatGTEx
  ENSRNOG00060029543 RatGTEx
  ENSRNOG00065031519 RatGTEx
UniProt A6J9W8 ENTREZGENE, UniProtKB/TrEMBL
  A6J9W9 ENTREZGENE, UniProtKB/TrEMBL
  A6J9X0_RAT UniProtKB/TrEMBL
  Q6X9T7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-11 Tyrobp  transmembrane immune signaling adaptor Tyrobp  Tyrobp  Tyro protein tyrosine kinase binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-11 Tyrobp  Tyro protein tyrosine kinase binding protein  LOC361537  DAP12  Symbol and Name updated 1299863 APPROVED