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Gene: Hps5 (HPS5, biogenesis of lysosomal organelles complex 2 subunit 2) Rattus norvegicus
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Symbol: Hps5
Name: HPS5, biogenesis of lysosomal organelles complex 2 subunit 2
Description: Predicted to be involved in blood coagulation; organelle organization; and pigmentation. Predicted to localize to the BLOC-2 complex. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome and Hermansky-Pudlak syndrome 5. Orthologous to human HPS5 (HPS5 biogenesis of lysosomal organelles complex 2 subunit 2); INTERACTS WITH 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole; 6-propyl-2-thiouracil; amiodarone.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Aa2-028; Ab1-018; Hermansky-Pudlak syndrome 5; LOC308598
Orthologs:
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01102,810,114 - 102,849,430 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1102,776,082 - 102,849,430 (-)Ensembl
Rnor_5.01103,884,175 - 103,923,493 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4197,312,474 - 97,351,792 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1197,357,754 - 97,407,436 (-)NCBI
Celera191,528,631 - 91,567,765 (-)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression


Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Hps5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311916
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-10-01
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.