Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Slc6a16 (solute carrier family 6, member 16) Rattus norvegicus
Analyze
Symbol: Slc6a16
Name: solute carrier family 6, member 16
RGD ID: 1561338
Description: Predicted to have neurotransmitter:sodium symporter activity. Predicted to be involved in transport. Predicted to localize to plasma membrane. Orthologous to human SLC6A16 (solute carrier family 6 member 16); INTERACTS WITH bisphenol A; 1,2-dimethylhydrazine (ortholog); aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC292902; orphan sodium- and chloride-dependent neurotransmitter transporter NTT5; RGD1561338; similar to Orphan sodium- and chloride-dependent neurotransmitter transporter NTT5 (Solute carrier family 6 member 16)
Orthologs:
Homo sapiens (human) : SLC6A16 (solute carrier family 6 member 16)  HGNC  Alliance
Mus musculus (house mouse) : Slc6a16 (solute carrier family 6, member 16)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Slc6a16 (solute carrier family 6 member 16)
Pan paniscus (bonobo/pygmy chimpanzee) : SLC6A16 (solute carrier family 6 member 16)
Canis lupus familiaris (dog) : SLC6A16 (solute carrier family 6 member 16)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Slc6a16 (solute carrier family 6 member 16)
Sus scrofa (pig) : LOC110261362 (orphan sodium- and chloride-dependent neurotransmitter transporter NTT5-like)
Chlorocebus sabaeus (African green monkey) : SLC6A16 (solute carrier family 6 member 16)
Heterocephalus glaber (naked mole-rat) : Slc6a16 (solute carrier family 6 member 16)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01101,236,275 - 101,261,668 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,249,522 - 101,261,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,302,510 - 102,325,628 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,728,395 - 95,740,069 (+)NCBIRGSC3.4rn4RGSC3.4
Celera189,983,257 - 90,008,357 (+)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Slc6a16
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1561338
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.