Cep89 (centrosomal protein 89) - Rat Genome Database

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Gene: Cep89 (centrosomal protein 89) Rattus norvegicus
Analyze
Symbol: Cep89
Name: centrosomal protein 89
RGD ID: 1311730
Description: Predicted to be involved in mitochondrion organization and non-motile cilium assembly. Predicted to be located in several cellular components, including microtubule cytoskeleton; motile cilium; and non-motile cilium. Predicted to be part of ciliary transition fiber. Predicted to be active in centriole. Orthologous to human CEP89 (centrosomal protein 89); INTERACTS WITH acrylamide; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Ccdc123; centrosomal protein 89kDa; centrosomal protein of 89 kDa; coiled-coil domain containing 123; LOC292811; MGC187737; RGD1311730; similar to RIKEN cDNA 2610507L03
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2188,058,211 - 88,100,114 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl188,058,227 - 88,100,112 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,463,760 - 93,505,773 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01101,929,734 - 101,971,726 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0195,222,050 - 95,264,063 (+)NCBIRnor_WKY
Rnor_6.0191,663,723 - 91,705,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,663,736 - 91,706,094 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,791,294 - 92,833,458 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,924,013 - 87,966,500 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1188,002,168 - 88,044,476 (+)NCBI
Celera182,407,979 - 82,446,813 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
cystinuria  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21399614   PMID:23348840   PMID:23789104   PMID:24469809  


Genomics

Comparative Map Data
Cep89
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2188,058,211 - 88,100,114 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl188,058,227 - 88,100,112 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,463,760 - 93,505,773 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01101,929,734 - 101,971,726 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0195,222,050 - 95,264,063 (+)NCBIRnor_WKY
Rnor_6.0191,663,723 - 91,705,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,663,736 - 91,706,094 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,791,294 - 92,833,458 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4187,924,013 - 87,966,500 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1188,002,168 - 88,044,476 (+)NCBI
Celera182,407,979 - 82,446,813 (+)NCBICelera
Cytogenetic Map1q21NCBI
CEP89
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381932,875,925 - 32,971,958 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1932,875,925 - 32,971,991 (-)EnsemblGRCh38hg38GRCh38
GRCh371933,366,831 - 33,462,864 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361938,061,744 - 38,154,709 (-)NCBINCBI36Build 36hg18NCBI36
Celera1930,063,528 - 30,156,461 (-)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1929,872,535 - 29,965,570 (-)NCBIHuRef
CHM1_11933,371,040 - 33,463,974 (-)NCBICHM1_1
T2T-CHM13v2.01935,394,651 - 35,490,633 (-)NCBIT2T-CHM13v2.0
Cep89
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39735,096,425 - 35,139,255 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl735,096,460 - 35,138,114 (+)EnsemblGRCm39 Ensembl
GRCm38735,396,999 - 35,439,830 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,397,035 - 35,438,689 (+)EnsemblGRCm38mm10GRCm38
MGSCv37736,182,112 - 36,223,703 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36735,105,853 - 35,147,444 (+)NCBIMGSCv36mm8
Celera730,535,590 - 30,543,689 (+)NCBICelera
Celera734,116,935 - 34,148,737 (+)NCBICelera
Cytogenetic Map7B2NCBI
Cep89
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554684,980,699 - 5,047,494 (+)NCBIChiLan1.0ChiLan1.0
CEP89
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11938,547,694 - 38,638,936 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1938,547,861 - 38,638,785 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01929,790,653 - 29,895,083 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CEP89
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,124,042 - 119,197,394 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1119,123,933 - 119,197,338 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,524,276 - 118,597,590 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,722,654 - 119,798,504 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,722,549 - 119,798,448 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,288,068 - 119,361,390 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,908,409 - 118,981,882 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,968,613 - 120,041,944 (+)NCBIUU_Cfam_GSD_1.0
Cep89
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093498,736,840 - 8,808,866 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365702,837,002 - 2,909,128 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP89
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl642,735,666 - 42,815,281 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1642,733,675 - 42,815,286 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,242,353 - 38,322,869 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CEP89
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1627,914,757 - 28,012,509 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl627,915,389 - 28,012,500 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660735,501,142 - 5,598,086 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep89
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247947,812,364 - 7,862,340 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla_female_1.0 EnsemblNW_0046247947,714,641 - 7,748,296 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247947,706,043 - 7,862,504 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cep89
419 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:99
Interacting mature miRNAs:116
Transcripts:ENSRNOT00000031236
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat

Markers in Region
AU047079  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2188,090,773 - 88,090,970 (+)MAPPERmRatBN7.2
Rnor_6.0191,696,246 - 91,696,442NCBIRnor6.0
Rnor_5.0192,823,725 - 92,823,921UniSTSRnor5.0
RGSC_v3.4187,957,162 - 87,957,358UniSTSRGSC3.4
Celera182,440,706 - 82,440,831UniSTS
Cytogenetic Map1q21UniSTS
AI230035  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2188,059,758 - 88,059,958 (+)MAPPERmRatBN7.2
Rnor_6.0191,665,251 - 91,665,450NCBIRnor6.0
Rnor_5.0192,792,839 - 92,793,038UniSTSRnor5.0
RGSC_v3.4187,925,490 - 87,925,689UniSTSRGSC3.4
Celera182,409,456 - 82,409,655UniSTS
RH 3.4 Map1865.2UniSTS
Cytogenetic Map1q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 27 18 10 18 58 27 37 3
Low 17 30 23 9 23 8 11 16 8 4 8 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000031236   ⟹   ENSRNOP00000029909
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl188,058,282 - 88,100,111 (+)Ensembl
Rnor_6.0 Ensembl191,663,774 - 91,705,976 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089587   ⟹   ENSRNOP00000071041
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl188,058,227 - 88,100,112 (+)Ensembl
Rnor_6.0 Ensembl191,663,736 - 91,706,094 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103641   ⟹   ENSRNOP00000090472
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl188,065,312 - 88,100,111 (+)Ensembl
RefSeq Acc Id: NM_001127599   ⟹   NP_001121071
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,058,282 - 88,100,112 (+)NCBI
Rnor_6.0191,663,774 - 91,705,977 (+)NCBI
Rnor_5.0192,791,294 - 92,833,458 (+)NCBI
RGSC_v3.4187,924,013 - 87,966,500 (+)RGD
Celera182,407,979 - 82,446,813 (+)RGD
Sequence:
RefSeq Acc Id: XM_006228881   ⟹   XP_006228943
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,058,211 - 88,100,114 (+)NCBI
Rnor_6.0191,663,723 - 91,705,979 (+)NCBI
Rnor_5.0192,791,294 - 92,833,458 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017588916   ⟹   XP_017444405
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,058,211 - 88,100,114 (+)NCBI
Rnor_6.0191,663,723 - 91,705,979 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017588917   ⟹   XP_017444406
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,058,211 - 88,092,398 (+)NCBI
Rnor_6.0191,663,723 - 91,699,362 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104566   ⟹   XP_038960494
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,058,211 - 88,100,114 (+)NCBI
RefSeq Acc Id: XR_001835367
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,058,211 - 88,096,832 (+)NCBI
Rnor_6.0191,663,723 - 91,700,010 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005501821
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2188,058,211 - 88,096,832 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001121071   ⟸   NM_001127599
- Sequence:
RefSeq Acc Id: XP_006228943   ⟸   XM_006228881
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JZG8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017444405   ⟸   XM_017588916
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017444406   ⟸   XM_017588917
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000029909   ⟸   ENSRNOT00000031236
RefSeq Acc Id: ENSRNOP00000071041   ⟸   ENSRNOT00000089587
RefSeq Acc Id: XP_038960494   ⟸   XM_039104566
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000090472   ⟸   ENSRNOT00000103641

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZG8-F1-model_v2 AlphaFold A0A0G2JZG8 1-790 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689972
Promoter ID:EPDNEW_R495
Type:initiation region
Name:Cep89_1
Description:centrosomal protein 89
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0191,663,735 - 91,663,795EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311730 AgrOrtholog
BioCyc Gene G2FUF-59973 BioCyc
Ensembl Genes ENSRNOG00000012140 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000029909.4 UniProtKB/TrEMBL
  ENSRNOP00000071041 ENTREZGENE
  ENSRNOP00000071041.1 UniProtKB/TrEMBL
  ENSRNOP00000090472.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000031236.5 UniProtKB/TrEMBL
  ENSRNOT00000089587 ENTREZGENE
  ENSRNOT00000089587.2 UniProtKB/TrEMBL
  ENSRNOT00000103641.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9025363 IMAGE-MGC_LOAD
InterPro CEP89 UniProtKB/TrEMBL
KEGG Report rno:292811 UniProtKB/TrEMBL
MGC_CLONE MGC:187737 IMAGE-MGC_LOAD
NCBI Gene 292811 ENTREZGENE
PANTHER PTHR36170 UniProtKB/TrEMBL
PhenoGen Cep89 PhenoGen
UniProt A0A0G2JZG8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ABV4_RAT UniProtKB/TrEMBL
  B1WBZ3_RAT UniProtKB/TrEMBL
UniProt Secondary E9PU67 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Cep89  centrosomal protein 89  Cep89  centrosomal protein 89kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-29 Cep89  centrosomal protein 89kDa  Ccdc123  coiled-coil domain containing 123  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-01-20 Ccdc123  coiled-coil domain containing 123  RGD1311730  similar to RIKEN cDNA 2610507L03   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1311730  similar to RIKEN cDNA 2610507L03   RGD1311730_predicted  similar to RIKEN cDNA 2610507L03 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1311730_predicted  similar to RIKEN cDNA 2610507L03 (predicted)  LOC292811_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC292811_predicted  similar to RIKEN cDNA 2610507L03 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL