Gene: Smg9 (SMG9 nonsense mediated mRNA decay factor) Rattus norvegicus
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Symbol: Smg9
Name: SMG9 nonsense mediated mRNA decay factor
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN brain development (ortholog); eye development (ortholog); heart development (ortholog); ASSOCIATED WITH Cardiovascular Abnormalities (ortholog); congenital heart disease (ortholog); Developmental Disabilities (ortholog); INTERACTS WITH bisphenol A; endosulfan; 1,2-dichloroethane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LOC365215; protein smg-9 homolog; RGD1309888; similar to RIKEN cDNA 1500002O20; smg-9 homolog, nonsense mediated mRNA decay factor; smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
Orthologs:
Homo sapiens (human) : SMG9 (SMG9, nonsense mediated mRNA decay factor)  HGNC  Alliance
Mus musculus (house mouse) : Smg9 (smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans))  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Smg9 (SMG9, nonsense mediated mRNA decay factor)
Pan paniscus (bonobo/pygmy chimpanzee) : SMG9 (SMG9, nonsense mediated mRNA decay factor)
Canis lupus familiaris (dog) : SMG9 (SMG9, nonsense mediated mRNA decay factor)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Smg9 (SMG9, nonsense mediated mRNA decay factor)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: suggests misassembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0181,259,450 - 81,282,893 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0182,522,701 - 82,545,409 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4179,643,483 - 79,665,871 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1179,721,593 - 79,743,981 (+)NCBI
Celera174,443,398 - 74,465,698 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Smg9
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309888
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2018-11-20
Status: ACTIVE