Gsk3a (glycogen synthase kinase 3 alpha) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Gsk3a (glycogen synthase kinase 3 alpha) Rattus norvegicus
Analyze
Symbol: Gsk3a
Name: glycogen synthase kinase 3 alpha
RGD ID: 620351
Description: Enables protein kinase A catalytic subunit binding activity; protein serine/threonine kinase activity; and protein serine/threonine kinase binding activity. Involved in negative regulation of dendrite development; negative regulation of insulin receptor signaling pathway; and positive regulation of neuron apoptotic process. Located in microtubule. Biomarker of Parkinsonism. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis. Orthologous to human GSK3A (glycogen synthase kinase 3 alpha); PARTICIPATES IN glycogen biosynthetic pathway; nuclear factor, erythroid 2 like 2 signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3,5-dichloro-N-[[(2S)-1-ethyl-2-pyrrolidinyl]methyl]-2-hydroxy-6-methoxybenzamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: FA; factor A; glycogen synthase kinase-3 alpha; GSK-3 alpha; serine/threonine-protein kinase GSK3A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,943,669 - 89,953,514 (-)NCBIGRCr8
mRatBN7.2180,815,843 - 80,825,732 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,815,850 - 80,825,802 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,208,062 - 86,217,908 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,759,217 - 94,769,063 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,963,839 - 87,973,686 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,097,244 - 82,108,238 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,097,247 - 82,108,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,365,717 - 83,374,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,505,517 - 80,514,139 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,583,627 - 80,592,250 (-)NCBI
Celera175,259,483 - 75,269,362 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gsk3aRatAlzheimer's disease treatmentISOGsk3a (Mus musculus)10401797 RGD 
Gsk3aRatAlzheimer's disease treatmentISOGsk3a (Mus musculus)10401801 RGD 
Gsk3aRatamyotrophic lateral sclerosis  ISOGSK3A (Homo sapiens)2301741 RGD 
Gsk3aRatExperimental Diabetes Mellitus treatmentIEP 10401824 RGD 
Gsk3aRatLeft Ventricular Hypertrophy  ISOGsk3a (Mus musculus)10401823 RGD 
Gsk3aRatParkinsonism  IEP 10401814protein:decreased expression:striatumRGD 
1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gsk3aRatCarpenter syndrome 2  ISOGSK3A (Homo sapiens)8554872ClinVar Annotator: match by term: Carpenter syndrome 2ClinVarPMID:28492532
Gsk3aRatcongenital hypoplastic anemia  ISOGSK3A (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital hypoplastic anemiaClinVarPMID:28492532
Gsk3aRatcraniosynostosis  ISOGSK3A (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic craniosynostosisClinVar 
Gsk3aRatcraniosynostosis  ISOGSK3A (Homo sapiens)8554872ClinVar more ...ClinVarPMID:28492532
Gsk3aRatcraniosynostosis 1  ISOGSK3A (Homo sapiens)8554872ClinVar Annotator: match by term: TWIST1-related craniosynostosisClinVarPMID:28492532
Gsk3aRatDiamond-Blackfan anemia  ISOGSK3A (Homo sapiens)8554872ClinVar Annotator: match by term: Aase syndromeClinVarPMID:28492532
Gsk3aRatdilated cardiomyopathy  ISOGSK3A (Homo sapiens)8554872ClinVar Annotator: match by term: Primary dilated cardiomyopathyClinVarPMID:28701297
Gsk3aRatMacrocephaly  ISOGSK3A (Homo sapiens)8554872ClinVar Annotator: match by term: MacrocephalyClinVar 
Gsk3aRatmaple syrup urine disease  ISOGSK3A (Homo sapiens)8554872ClinVar Annotator: match by term: Maple syrup urine diseaseClinVarPMID:28492532
Gsk3aRatschizophrenia  ISOGSK3A (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106 and PMID:30208311
Gsk3aRatsyndromic intellectual disability  ISOGSK3A (Homo sapiens)8554872ClinVar Annotator: match by term: Syndromic intellectual disabilityClinVar 
1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gsk3aRatbipolar disorder  ISOGSK3A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20357757
Gsk3aRatdepressive disorder  ISOGSK3A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20357757
Gsk3aRatschizophrenia  ISOGSK3A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16223876

1 to 20 of 149 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gsk3aRat(-)-epigallocatechin 3-gallate increases phosphorylationISOGSK3A (Homo sapiens)6480464epigallocatechin gallate results in increased phosphorylation of GSK3A proteinCTDPMID:16968065
Gsk3aRat(S)-nicotine multiple interactionsISOGSK3A (Homo sapiens)6480464[Nicotine results in increased phosphorylation of and results in increased activity of AKT1 protein] which results in increased phosphorylation of GSK3A proteinCTDPMID:12511591
Gsk3aRat(S)-nicotine increases expressionISOGsk3a (Mus musculus)6480464Nicotine results in increased expression of GSK3A mRNACTDPMID:31945395
Gsk3aRat(S)-nicotine multiple interactionsISOGsk3a (Mus musculus)6480464Nicotine results in increased expression of and results in decreased phosphorylation of GSK3A proteinCTDPMID:31945395
Gsk3aRat1,2-dimethylhydrazine multiple interactionsISOGsk3a (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in increased expression of GSK3A mRNACTDPMID:22206623
Gsk3aRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOGSK3A (Homo sapiens)64804642 more ...CTDPMID:31675489
Gsk3aRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOGSK3A (Homo sapiens)6480464Tetrachlorodibenzodioxin results in increased expression of GSK3A mRNACTDPMID:23152189
Gsk3aRat2,3,7,8-tetrachlorodibenzodioxine decreases phosphorylationEXP 6480464Tetrachlorodibenzodioxin results in decreased phosphorylation of GSK3A proteinCTDPMID:23639626
Gsk3aRat2,4,6-tribromophenol decreases expressionISOGSK3A (Homo sapiens)64804642 more ...CTDPMID:31675489
Gsk3aRat2,4-dinitrotoluene affects expressionEXP 64804642 and 4-dinitrotoluene affects the expression of GSK3A mRNACTDPMID:21346803
Gsk3aRat3,3',5,5'-tetrabromobisphenol A increases expressionISOGSK3A (Homo sapiens)6480464tetrabromobisphenol A results in increased expression of GSK3A proteinCTDPMID:31675489
Gsk3aRat3,5-dichloro-N-[[(2S)-1-ethyl-2-pyrrolidinyl]methyl]-2-hydroxy-6-methoxybenzamide multiple interactionsEXP 6480464DRD2 protein affects the reaction [Raclopride results in increased expression of GSK3A protein]CTDPMID:16144542
Gsk3aRat3,5-dichloro-N-[[(2S)-1-ethyl-2-pyrrolidinyl]methyl]-2-hydroxy-6-methoxybenzamide increases expressionEXP 6480464Raclopride results in increased expression of GSK3A proteinCTDPMID:16144542
Gsk3aRat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOGSK3A (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of GSK3A mRNACTDPMID:28628672
Gsk3aRat4,4'-sulfonyldiphenol increases expressionISOGSK3A (Homo sapiens)6480464bisphenol S results in increased expression of GSK3A mRNACTDPMID:38568856
Gsk3aRat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of GSK3A mRNACTDPMID:36041667
Gsk3aRat4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one multiple interactionsISOGSK3A (Homo sapiens)6480464[4-(N-methyl-N-nitrosamino)-1-(3-pyridyl)-1-butanone results in increased phosphorylation of and results in increased activity of AKT1 protein] which results in increased phosphorylation of GSK3A proteinCTDPMID:12511591
Gsk3aRat5-aza-2'-deoxycytidine increases expressionISOGsk3a (Mus musculus)6480464Decitabine results in increased expression of GSK3A mRNACTDPMID:27915011
Gsk3aRat6-bromoindirubin-3'-oxime multiple interactionsISOGSK3A (Homo sapiens)64804646-bromoindirubin-3'-oxime promotes the reaction [Paraquat results in decreased expression of GSK3A protein modified form]CTDPMID:28414160
Gsk3aRatactinomycin D multiple interactionsISOGSK3A (Homo sapiens)6480464[Dactinomycin co-treated with nutlin 3] results in increased secretion of GSK3A proteinCTDPMID:38460933

1 to 20 of 149 rows

Biological Process
1 to 20 of 58 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gsk3aRatautosome genomic imprinting acts_upstream_of_positive_effectISOGsk3a (Mus musculus)1624291 PMID:21047779RGDPMID:21047779
Gsk3aRatcardiac left ventricle morphogenesis involved_inISOGsk3a (Mus musculus)1624291 PMID:20516643RGDPMID:20516643
Gsk3aRatcell differentiation involved_inIBAFB:FBgn0003371 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gsk3aRatcell migration acts_upstream_of_or_withinISOGsk3a (Mus musculus)1624291MGI:98958 PMID:17986005RGDPMID:17986005
Gsk3aRatcellular response to glucocorticoid stimulus involved_inISOGsk3a (Mus musculus)1624291UniProtKB:Q9WV60 and PMID:20371704RGDPMID:20371704
Gsk3aRatcellular response to insulin stimulus involved_inISOGSK3A (Homo sapiens)1624291 PMID:17569761RGDPMID:17569761
Gsk3aRatcellular response to interleukin-3 involved_inISSUniProtKB:Q2NL511600115GO_REF:0000024UniProtGO_REF:0000024
Gsk3aRatcellular response to interleukin-3 involved_inISOGsk3a (Mus musculus)1624291 PMID:16543145RGDPMID:16543145
Gsk3aRatcellular response to lithium ion acts_upstream_of_or_withinISOGsk3a (Mus musculus)1624291 PMID:15673614RGDPMID:15673614
Gsk3aRatextrinsic apoptotic signaling pathway involved_inISOGsk3a (Mus musculus)1624291UniProtKB:Q9WV60 and PMID:20371704RGDPMID:20371704
Gsk3aRatextrinsic apoptotic signaling pathway in absence of ligand involved_inISSUniProtKB:Q2NL511600115GO_REF:0000024UniProtGO_REF:0000024
Gsk3aRatextrinsic apoptotic signaling pathway in absence of ligand involved_inISOGsk3a (Mus musculus)1624291 PMID:16543145RGDPMID:16543145
Gsk3aRatglycogen metabolic process involved_inIEAUniProtKB-KW:KW-03211600115GO_REF:0000043UniProtGO_REF:0000043
Gsk3aRatinsulin receptor signaling pathway involved_inISOGsk3a (Mus musculus)1624291 PMID:18285345RGDPMID:18285345
Gsk3aRatinsulin receptor signaling pathway involved_inIBAMGI:1861437 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gsk3aRatnegative regulation of canonical Wnt signaling pathway involved_inIBAFB:FBgn0003371 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gsk3aRatnegative regulation of cell growth involved in cardiac muscle cell development involved_inISOGsk3a (Mus musculus)1624291 PMID:20516643RGDPMID:20516643
Gsk3aRatnegative regulation of D-glucose import involved_inISOGSK3A (Homo sapiens)1624291 PMID:17569761RGDPMID:17569761
Gsk3aRatnegative regulation of dendrite development  IMP 10401820 RGD 
Gsk3aRatnegative regulation of developmental process involved_inIEAARBA:ARBA000275831600115GO_REF:0000117UniProtGO_REF:0000117
1 to 20 of 58 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gsk3aRataxon is_active_inIBAFB:FBgn0003371 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gsk3aRatcytoplasm is_active_inIBAFB:FBgn0003371 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gsk3aRatcytosol located_inTAS 1600115Reactome:R-RNO-198601ReactomeReactome:R-RNO-198601
Gsk3aRatcytosol is_active_inIBAFB:FBgn0003371 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gsk3aRatmicrotubule  IDA 10401922 RGD 
Gsk3aRatmitochondrion located_inIEAGO:19010301600115GO_REF:0000108GOCGO_REF:0000108
Gsk3aRatnucleus is_active_inIBAFB:FBgn0003371 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
1 to 20 of 26 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gsk3aRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Gsk3aRatATP binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
Gsk3aRatATP binding enablesIEAInterPro:IPR000719 and InterPro:IPR0174411600115GO_REF:0000002InterProGO_REF:0000002
Gsk3aRatkinase activity enablesIEAUniProtKB-KW:KW-04181600115GO_REF:0000043UniProtGO_REF:0000043
Gsk3aRatnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Gsk3aRatnucleotide binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
Gsk3aRatprotein binding enablesISOGsk3a (Mus musculus)1624291UniProtKB:O54918 more ...RGDPMID:16051150 and PMID:20371704
Gsk3aRatprotein binding enablesISOGSK3A (Homo sapiens)1624291UniProtKB:O00571 more ...RGDPMID:10481074 more ...
Gsk3aRatprotein kinase A catalytic subunit binding enablesIPIUniProtKB:P277918554447PMID:11035810BHF-UCL 
Gsk3aRatprotein kinase A catalytic subunit binding enablesISOGSK3A (Homo sapiens)1624291UniProtKB:P17612 and PMID:11035810RGDPMID:11035810
Gsk3aRatprotein kinase activity enablesISOGsk3a (Mus musculus)1624291 PMID:14730361 and PMID:22539723RGDPMID:14730361 and PMID:22539723
Gsk3aRatprotein kinase activity enablesIEAInterPro:IPR000719 and InterPro:IPR0082711600115GO_REF:0000002InterProGO_REF:0000002
Gsk3aRatprotein kinase binding  IPICamk2b (Rattus norvegicus)10401822 RGD 
Gsk3aRatprotein serine kinase activity enablesIEARHEA:179891600115GO_REF:0000116RHEAGO_REF:0000116
Gsk3aRatprotein serine/threonine kinase activity  IDA 70757 RGD 
Gsk3aRatprotein serine/threonine kinase activity enablesIEAEC:2.7.11.11600115GO_REF:0000003UniProtGO_REF:0000003
Gsk3aRatprotein serine/threonine kinase activity enablesIEAUniProtKB-KW:KW-07231600115GO_REF:0000043UniProtGO_REF:0000043
Gsk3aRatprotein serine/threonine kinase activity enablesISOGsk3a (Mus musculus)1624291 PMID:16543145 and PMID:17986005RGDPMID:16543145 and PMID:17986005
Gsk3aRatprotein serine/threonine kinase activity enablesIBAFB:FBgn0003371 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Gsk3aRatprotein serine/threonine kinase activity enablesIEAARBA:ARBA000270161600115GO_REF:0000117UniProtGO_REF:0000117
1 to 20 of 26 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gsk3aRatglycogen biosynthetic pathway   ISOGSK3A (Homo sapiens)2306093 RGD 
Gsk3aRatnuclear factor, erythroid 2 like 2 signaling pathway   ISOGSK3A (Homo sapiens)11535070 RGD 

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gsk3aRatchemokine mediated signaling pathway  IEA 6907045 KEGGrno:04062

Imported Annotations - PID (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gsk3aRatphosphatidylinositol 3-kinase-Akt signaling pathway   ISOGSK3A (Homo sapiens)6484113 PIDPID:200197
Gsk3aRatWnt signaling, canonical pathway   ISOGSK3A (Homo sapiens)6484113 PIDPID:200077

1 to 20 of 22 rows
#
Reference Title
Reference Citation
1. Inhibition of glycogen synthase kinase-3 by insulin mediated by protein kinase B. Cross DA, etal., Nature. 1995 Dec 21-28;378(6559):785-9.
2. Structural and functional characterization of Nrf2 degradation by glycogen synthase kinase 3/beta-TrCP. Cuadrado A Free Radic Biol Med. 2015 Nov;88(Pt B):147-57. doi: 10.1016/j.freeradbiomed.2015.04.029. Epub 2015 Apr 30.
3. Phosphorylation and inactivation of glycogen synthase kinase 3 by protein kinase A. Fang X, etal., Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):11960-5.
4. Glycogen synthase kinase 3: a key regulator of cellular fate. Forde JE and Dale TC, Cell Mol Life Sci. 2007 Aug;64(15):1930-44.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Different localization of tau protein kinase I/glycogen synthase kinase-3 beta from glycogen synthase kinase-3 alpha in cerebellum mitochondria. Hoshi M, etal., J Biochem. 1995 Oct;118(4):683-5.
7. Protein kinase and protein phosphatase expression in amyotrophic lateral sclerosis spinal cord. Hu JH, etal., J Neurochem. 2003 Apr;85(2):432-42.
8. Selectively silencing GSK-3 isoforms reduces plaques and tangles in mouse models of Alzheimer's disease. Hurtado DE, etal., J Neurosci. 2012 May 23;32(21):7392-402. doi: 10.1523/JNEUROSCI.0889-12.2012.
9. Measures of striatal insulin resistance in a 6-hydroxydopamine model of Parkinson's disease. Morris JK, etal., Brain Res. 2008 Nov 13;1240:185-95. doi: 10.1016/j.brainres.2008.08.089. Epub 2008 Sep 11.
10. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
13. Insulin decreases the glycogen synthase kinase-3 alpha mRNA levels by altering its stability in streptozotocin-induced diabetic rat liver. Rao PV, etal., Biochem Biophys Res Commun. 1995 Dec 5;217(1):250-6.
14. Flavonoid-mediated presenilin-1 phosphorylation reduces Alzheimer's disease beta-amyloid production. Rezai-Zadeh K, etal., J Cell Mol Med. 2009 Mar;13(3):574-88. doi: 10.1111/j.1582-4934.2008.00344.x. Epub 2008 Apr 9.
15. GOA pipeline RGD automated data pipeline
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Enhanced glycogenesis is involved in cellular senescence via GSK3/GS modulation. Seo YH, etal., Aging Cell. 2008 Dec;7(6):894-907. doi: 10.1111/j.1474-9726.2008.00436.x. Epub 2008 Sep 8.
18. Inhibitory phosphorylation of GSK-3 by CaMKII couples depolarization to neuronal survival. Song B, etal., J Biol Chem. 2010 Dec 24;285(52):41122-34. doi: 10.1074/jbc.M110.130351. Epub 2010 Sep 14.
19. GSK-3alpha/beta-mediated phosphorylation of CRMP-2 regulates activity-dependent dendritic growth. Tan M, etal., J Neurochem. 2013 Jun;125(5):685-97. doi: 10.1111/jnc.12230. Epub 2013 Mar 25.
20. Molecular cloning and expression of glycogen synthase kinase-3/factor A. Woodgett JR EMBO J 1990 Aug;9(8):2431-8.
1 to 20 of 22 rows
PMID:8382613   PMID:10995739   PMID:12055200   PMID:12761548   PMID:14698990   PMID:14730361   PMID:15572200   PMID:15673614   PMID:16537926   PMID:16543145   PMID:16912034   PMID:17569761  
PMID:17986005   PMID:17993264   PMID:18285345   PMID:19583853   PMID:19706605   PMID:19840222   PMID:20371704   PMID:20516643   PMID:21047779   PMID:21266584   PMID:21316358   PMID:22539723  
PMID:23192081   PMID:23246341   PMID:23999152   PMID:24631206   PMID:24912190   PMID:25897075   PMID:25935310   PMID:26514267   PMID:28440874   PMID:29161257  



Gsk3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,943,669 - 89,953,514 (-)NCBIGRCr8
mRatBN7.2180,815,843 - 80,825,732 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,815,850 - 80,825,802 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,208,062 - 86,217,908 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,759,217 - 94,769,063 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,963,839 - 87,973,686 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,097,244 - 82,108,238 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,097,247 - 82,108,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,365,717 - 83,374,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,505,517 - 80,514,139 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,583,627 - 80,592,250 (-)NCBI
Celera175,259,483 - 75,269,362 (-)NCBICelera
Cytogenetic Map1q21NCBI
GSK3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381942,230,190 - 42,242,602 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1942,226,225 - 42,242,625 (-)EnsemblGRCh38hg38GRCh38
GRCh371942,734,342 - 42,746,754 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,426,178 - 47,438,576 (-)NCBINCBI36Build 36hg18NCBI36
Build 341947,426,177 - 47,438,576NCBI
Celera1939,535,133 - 39,547,532 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1939,164,764 - 39,177,148 (-)NCBIHuRef
CHM1_11942,736,013 - 42,748,418 (-)NCBICHM1_1
T2T-CHM13v2.01945,049,560 - 45,061,976 (-)NCBIT2T-CHM13v2.0
Gsk3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,927,683 - 24,937,276 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,927,683 - 24,937,276 (-)EnsemblGRCm39 Ensembl
GRCm38725,228,258 - 25,237,851 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,228,258 - 25,237,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv37726,013,278 - 26,022,870 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,937,019 - 24,946,611 (-)NCBIMGSCv36mm8
Celera719,843,563 - 19,853,655 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.73NCBI
Gsk3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555667,973 - 676,351 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955555668,641 - 676,351 (+)NCBIChiLan1.0ChiLan1.0
GSK3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22048,335,581 - 48,348,020 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11950,204,206 - 50,216,648 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01939,118,330 - 39,130,768 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11947,710,197 - 47,722,531 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1947,710,197 - 47,726,948 (-)Ensemblpanpan1.1panPan2
GSK3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,129,116 - 112,138,714 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,103,825 - 112,138,559 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,555,288 - 111,565,002 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01112,741,760 - 112,751,476 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1112,741,641 - 112,751,092 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,295,962 - 112,305,677 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01111,931,910 - 111,941,621 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01112,858,454 - 112,868,171 (+)NCBIUU_Cfam_GSD_1.0
Gsk3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934915,919,119 - 15,929,912 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706269,126 - 277,256 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936706266,462 - 277,256 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSK3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,690,370 - 49,701,189 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,690,319 - 49,700,735 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,607,906 - 45,618,432 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GSK3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,434,966 - 36,447,676 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl636,435,578 - 36,447,633 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607314,679,200 - 14,692,630 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gsk3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907511,889 - 522,168 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907511,919 - 522,106 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Gsk3a
49 total Variants

Predicted Target Of
Summary Value
Count of predictions:6
Count of miRNA genes:3
Interacting mature miRNAs:6
Transcripts:ENSRNOT00000027677
Prediction methods:Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat

1 to 10 of 31 rows
AI044641  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2180,817,592 - 80,817,772 (+)MAPPERmRatBN7.2
Rnor_6.0182,100,103 - 82,100,282NCBIRnor6.0
Rnor_5.0183,366,607 - 83,366,786UniSTSRnor5.0
RGSC_v3.4180,506,039 - 80,506,218UniSTSRGSC3.4
Celera175,261,262 - 75,261,441UniSTS
RH 3.4 Map1824.5UniSTS
Cytogenetic Map1q21UniSTS
AU048392  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2180,827,014 - 80,827,144 (+)MAPPERmRatBN7.2
Rnor_6.0182,109,527 - 82,109,658NCBIRnor6.0
Rnor_5.0183,376,031 - 83,376,162UniSTSRnor5.0
RGSC_v3.4180,515,463 - 80,515,594UniSTSRGSC3.4
Celera175,270,686 - 75,270,817UniSTS
Cytogenetic Map1q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000027677   ⟹   ENSRNOP00000027677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl180,815,850 - 80,825,802 (-)Ensembl
Rnor_6.0 Ensembl182,097,848 - 82,108,083 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084530   ⟹   ENSRNOP00000074376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl182,097,247 - 82,108,203 (-)Ensembl
RefSeq Acc Id: NM_017344   ⟹   NP_059040
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8189,943,669 - 89,953,514 (-)NCBI
mRatBN7.2180,815,847 - 80,825,691 (-)NCBI
Rnor_6.0182,097,244 - 82,108,203 (-)NCBI
Rnor_5.0183,365,717 - 83,374,707 (-)NCBI
RGSC_v3.4180,505,517 - 80,514,139 (-)RGD
Celera175,259,483 - 75,269,362 (-)RGD
Sequence:
Protein RefSeqs NP_059040 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA37518 (Get FASTA)   NCBI Sequence Viewer  
  EDM08037 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000106761
GenBank Protein P18265 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_059040   ⟸   NM_017344
- UniProtKB: P18265 (UniProtKB/Swiss-Prot),   A6J947 (UniProtKB/TrEMBL),   A0A8L2QGG1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074376   ⟸   ENSRNOT00000084530
Ensembl Acc Id: ENSRNOP00000027677   ⟸   ENSRNOT00000027677
Protein kinase

Name Modeler Protein Id AA Range Protein Structure
AF-P18265-F1-model_v2 AlphaFold P18265 1-483 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689811
Promoter ID:EPDNEW_R336
Type:initiation region
Name:Gsk3a_1
Description:glycogen synthase kinase 3 alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0182,108,178 - 82,108,238EPDNEW


1 to 26 of 26 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60396 BioCyc
Ensembl Genes ENSRNOG00000020417 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000147391 ENTREZGENE
Gene3D-CATH Phosphorylase Kinase, domain 1 UniProtKB/Swiss-Prot
  Transferase(Phosphotransferase) domain 1 UniProtKB/Swiss-Prot
InterPro GSK-3 UniProtKB/Swiss-Prot
  Kinase-like_dom_sf UniProtKB/Swiss-Prot
  Prot_kinase_dom UniProtKB/Swiss-Prot
  Protein_kinase_ATP_BS UniProtKB/Swiss-Prot
  Ser/Thr_kinase_AS UniProtKB/Swiss-Prot
  STKc_GSK3 UniProtKB/Swiss-Prot
KEGG Report rno:50686 UniProtKB/Swiss-Prot
NCBI Gene 50686 ENTREZGENE
PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA UniProtKB/Swiss-Prot
  GLYCOGEN SYNTHASE KINASE-3 ALPHA UniProtKB/Swiss-Prot
Pfam Pkinase UniProtKB/Swiss-Prot
PhenoGen Gsk3a PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/Swiss-Prot
  PROTEIN_KINASE_DOM UniProtKB/Swiss-Prot
  PROTEIN_KINASE_ST UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000020417 RatGTEx
SMART S_TKc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56112 UniProtKB/Swiss-Prot
UniProt A0A8L2QGG1 ENTREZGENE, UniProtKB/TrEMBL
  A6J947 ENTREZGENE, UniProtKB/TrEMBL
  GSK3A_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 26 of 26 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Gsk3a  glycogen synthase kinase 3 alpha      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Gsk3a  glycogen synthase kinase 3 alpha      Symbol and Name status set to provisional 70820 PROVISIONAL

Note Type Note Reference
gene_protein 51 kDa 70757