Meiosin (meiosis initiator) - Rat Genome Database

Name: Meiosin
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Meiosin (meiosis initiator) Rattus norvegicus

Analyze

Symbol:

Meiosin

Name:

meiosis initiator

RGD ID:

7528935

Description:

Predicted to be involved in several processes, including activation of meiosis; cellular response to retinoic acid; and gamete generation. Predicted to localize to nucleus. Orthologous to human MEIOSIN (meiosis initiator); INTERACTS WITH aflatoxin B1 (ortholog); aflatoxin B2 (ortholog); benzo[e]pyrene (ortholog).

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

basic helix-loop-helix and HMG box domain-containing protein 1; basic helix-loop-helix and HMG-box containing 1; Bhmg1; LOC102553424; uncharacterized LOC102553424

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MEIOSIN (meiosis initiator)	HGNC	NCBI
Mus musculus (house mouse):	Meiosin (meiosis initiator)	HGNC	NCBI
Chinchilla lanigera (long-tailed chinchilla):	Meiosin (meiosis initiator)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MEIOSIN (meiosis initiator)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MEIOSIN (meiosis initiator)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Meiosin (meiosis initiator)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MEIOSIN (meiosis initiator)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	MEIOSIN (meiosis initiator)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Meiosin (meiosis initiator)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MEIOSIN (meiosis initiator)	Alliance	DIOPT (HGNC)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	78,744,504 - 78,768,104 (-)	NCBI
Rnor_6.0	1	80,004,481 - 80,028,841 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	81,272,252 - 81,296,330 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	1	73,211,377 - 73,235,744 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

benzo[e]pyrene (ISO)

methapyrilene (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of meiosis (ISO)

cellular response to retinoic acid (ISO)

meiotic cell cycle (ISO)

oogenesis (ISO)

regulation of transcription by RNA polymerase II (ISO)

spermatogenesis (ISO)

Cellular Component

nucleus (ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Meiosin
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	78,744,504 - 78,768,104 (-)	NCBI
Rnor_6.0	1	80,004,481 - 80,028,841 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	81,272,252 - 81,296,330 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	1	73,211,377 - 73,235,744 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

MEIOSIN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	45,733,251 - 45,764,534 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	19	45,733,439 - 45,764,541 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	45,733,439 - 45,764,692 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	46,236,697 - 46,267,799 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	50,934,794 - 50,967,602 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	19	43,049,081 - 43,073,496 (+)	NCBI
Cytogenetic Map	19	q13.32	NCBI
HuRef	19	42,672,001 - 42,691,753 (+)	NCBI		HuRef
CHM1_1	19	46,240,001 - 46,271,311 (+)	NCBI		CHM1_1

Meiosin
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	18,832,196 - 18,852,456 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	7	18,832,971 - 18,852,293 (-)	Ensembl
GRCm38	7	19,098,271 - 19,118,531 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	19,099,046 - 19,118,368 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	19,684,395 - 19,703,717 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	7	18,257,568 - 18,276,890 (-)	NCBI			mm8
Celera	7	16,509,661 - 16,529,873 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI

Meiosin
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955574	193,972 - 221,497 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955574	194,108 - 221,395 (+)	NCBI	ChiLan1.0	ChiLan1.0

MEIOSIN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	51,275,766 - 51,311,428 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	51,277,884 - 51,311,007 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	42,740,226 - 42,773,923 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

MEIOSIN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	1	109,840,173 - 109,861,205 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	1	109,840,667 - 109,865,886 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Meiosin
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936706	2,105,135 - 2,119,707 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MEIOSIN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	52,079,224 - 52,094,663 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	52,079,726 - 52,094,663 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

MEIOSIN
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	39,178,855 - 39,214,485 (+)	NCBI
ChlSab1.1 Ensembl	6	39,190,614 - 39,214,065 (+)	Ensembl

Meiosin
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624832	7,434,741 - 7,460,148 (-)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	254393	86904217	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5655769	122614963	Rat
4889451	Eae29	Experimental allergic encephalomyelitis QTL 29	5.51		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	5655772	85706974	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	1	11314489	83657083	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11314489	83657083	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11314489	83657083	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11314489	83657083	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11314489	83657083	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11314489	83657083	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11314489	83657083	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	23406428	108057505	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	25951907	130917265	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34993530	173445086	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	35377508	94364229	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	35377692	217372257	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	35854167	80854167	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	35854167	80854167	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	35854167	80854167	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	41907249	86907249	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43579208	126240667	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43579208	126240667	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43579208	126240667	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	1	43579208	126240667	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43579208	126240667	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	49147799	156446783	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49547328	83657083	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49578577	94578577	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49578577	169852184	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49578693	217054291	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	50522714	94225616	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53851348	83657083	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53851348	83657083	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	57761301	104391981	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	58209327	103209327	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	58354072	161711996	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	64588516	125875986	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	66113339	122614963	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	67227683	94201552	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	79134941	113593716	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	79689548	124689548	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	79689765	94909507	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_039093340	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

XM_006223113 ⟹ XP_006223175

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	1	73,211,377 - 73,235,744 (-)	NCBI

Sequence:

show sequence

TACACCTCCCAACATGCAACATGATGTTGGGTTCCGACAAATTCTCGCGTTTCTCTGATCAGCT
CAGAGCTAGTTCTCCGAGTTCTACTGACAGGAAGGATAAGAAAAACCACACGAACAAACTTCGA
GAACTGGCCATGATGATCCCTGTGACCATGAAGACCAGAAACAAGAAGTACACCAAGAAGGAGA
TCCTGCTGCGTATCCTGCACTACATCCAGTACCTCCAGAGAAACATCGACATGACCAAGGCCTT
GCTCAAGCTCCACAGCAGCAATGGCAAAGATGGATTTGTGGGGCCGGGTGTGAACCCATCTGCT
GGCCAGACAGAGCAGCAACACTCCACCCCCTGCAGCTCTCAGAAGTCAGGCCTTTGGAGCAACT
GTTCAAAACCTCGGAAGAAGAAGTTTACCCAAGTGTCAGAGCGCCCCGCCTGGCCCTGTAAGCC
TCGACGTTCTCTAGCTCTGGACCAATCTGAAAATCCCATCGCCGTATACCCAGCCACACACCCA
GGCCTAAAGGAAGAAAATGAGGAAGGTGTCACCTATCTGGGAGACCTCAGCCCTAGCACCTGCC
CCACAACTGCACCGCCCGTGTCTGAAGGGGACGAACAAGGGGCCCAGCTGGTGTTCTTGGACAT
GGCTCAGAACATCGTTGCCTATGACATCACAAGTGATCATGCTGTAGAAGTCCAGGATGGAGAG
CCCAATGCTGACATCAAAGTTCAGAGGTCCTATTTCCTCACCAGGGCACAGCCCTGTGTCAGGC
AGAAGCTATTCTTGTGTACTTCCAGTGAGGCAGACAAAGAAGCCCCAGACACTGACCCCTGGCT
TCCTGTTTGGACCTCCGAGGATAGCCCCAATGGGAGCCCACTGGCTTTGGGGTCTTCCCAGATC
AATACCTGGCATGTGGCAAACTACCTGAATGAGATCTTAGGAGTCAGCTCTTCCCTCTTCAGCT
CCCCAAGCAAAATCCTGCCGGATCATGTCCTGGAGGATGGTACCTACTTTCTGACTGAAGGTCT
TTTGGAGTCTTCACCTGCTGCCTGTGAAGTGGAGGGCCCACAAGAGCAGGAAGCATCCTCTGGA
GCCCCCACAGGCCCACCTAACTTCCAATCCTCTGTCTCACTGGACCACTGCTACCTGTCGCTGA
GTGAGAATGTCAAGGTGCTGTCCAACTGTGGCTCCAGCTCAGAGTCCACAGACACAGAGTCCTT
GTGGGGACAGGAGGAGCAGGCCAATCCTGAGGGCTTGCAGACCTCAAGTGATGAGGACAGAGAC
TACACATGGACACCTACCCGGGGGTCTTCTGGCCTGCTGGTAGCTAGCAAGAAGATGAAGAAGG
TCCAGGCAAGCCAGGGCCCCGAGAAGCCCAAAGACAGTAGAAAAGCCTGCCCTGGCCAGGTGAA
GAAAAAGTGTGTTAATGGCTTCATCATGTTCTGCAGGATGAACCGGAAGCAGTACATCCGAGCC
TGTCCTGGAACTGCATCCACAGCTGCCACCAAGGATCTGGCTCAACTGTGGCGAGGGATGACTA
TGGAAGAAAAGAAACCATACTGCACTAAGGCACGCAGGTTCAGCCGGCAGCACAACCGAATTGT
GAAGCAGGAAAGCTCCAGCAGTGAGGACGACGATGGGGAGACCCCCAAACCCTTCTATCAGCTG
CTGGCTGAGAAGGCCCAAGTGTCTTTGGGCCTCACCTCACTGCCCACCCCTCACTGCGAGTAAG
AGGCAGTCCCTGC

hide sequence

RefSeq Acc Id:

XM_006228494 ⟹ XP_006228556

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	80,004,481 - 80,028,841 (-)	NCBI
Rnor_5.0	1	81,272,252 - 81,296,330 (-)	NCBI

Sequence:

show sequence

TACACCTCCCAACATGCAACATGATGTTGGGTTCCGACAAATTCTCGCGTTTCTCTGATCAGCT
CAGAGCTAGTTCTCCGAGTTCTACTGACAGGAAGGATAAGAAAAACCACACGAACAAACTTCGA
GAACTGGCCATGATGATCCCTGTGACCATGAAGACCAGAAACAAGAAGTACACCAAGAAGGAGA
TCCTGCTGCGTATCCTGCACTACATCCAGTACCTCCAGAGAAACATCGACATGACCAAGGCCTT
GCTCAAGCTCCACAGCAGCAATGGCAAAGATGGATTTGTGGGGCCGGGTGTGAACCCATCTGCT
GGCCAGACAGAGCAGCAACACTCCACCCCCTGCAGCTCTCAGAAGTCAGGCCTTTGGAGCAACT
GTTCAAAACCTCGGAAGAAGAAGTTTACCCAAGTGTCAGAGCGCCCCGCCTGGCCCTGTAAGCC
TCGACGTTCTCTAGCTCTGGACCAATCTGAAAATCCCATCGCCGTATACCCAGCCACACACCCA
GGCCTAAAGGAAGAAAATGAGGAAGGTGTCACCTATCTGGGAGACCTCAGCCCTAGCACCTGCC
CCACAACTGCACCGCCCGTGTCTGAAGGGGACGAACAAGGGGCCCAGCTGGTGTTCTTGGACAT
GGCTCAGAACATCGTTGCCTATGACATCACAAGTGATCATGCTGTAGAAGTCCAGGATGGAGAG
CCCAATGCTGACATCAAAGTTCAGAGGTCCTATTTCCTCACCAGGGCACAGCCCTGTGTCAGGC
AGAAGCTATTCTTGTGTACTTCCAGTGAGGCAGACAAAGAAGCCCCAGACACTGACCCCTGGCT
TCCTGTTTGGACCTCCGAGGATAGCCCCAATGGGAGCCCACTGGCTTTGGGGTCTTCCCAGATC
AATACCTGGCATGTGGCAAACTACCTGAATGAGATCTTAGGAGTCAGCTCTTCCCTCTTCAGCT
CCCCAAGCAAAATCCTGCCGGATCATGTCCTGGAGGATGGTACCTACTTTCTGACTGAAGGTCT
TTTGGAGTCTTCACCTGCTGCCTGTGAAGTGGAGGGCCCACAAGAGCAGGAAGCATCCTCTGGA
GCCCCCACAGGCCCACCTAACTTCCAATCCTCTGTCTCACTGGACCACTGCTACCTGTCGCTGA
GTGAGAATGTCAAGGTGCTGTCCAACTGTGGCTCCAGCTCAGAGTCCACAGACACAGAGTCCTT
GTGGGGACAGGAGGAGCAGGCCAATCCTGAGGGCTTGCAGACCTCAAGTGATGAGGACAGAGAC
TACACATGGACACCTACCCGGGGGTCTTCTGGCCTGCTGGTAGCTAGCAAGAAGATGAAGAAGG
TCCAGGCAAGCCAGGGCCCCGAGAAGCCCAAAGACAGTAGAAAAGCCTGCCCTGGCCAGGTGAA
GAAAAAGTGTGTTAATGGCTTCATCATGTTCTGCAGGATGAACCGGAAGCAGTACATCCGAGCC
TGTCCTGGAACTGCATCCACAGCTGCCACCAAGGATCTGGCTCAACTGTGGCGAGGGATGACTA
TGGAAGAAAAGAAACCATACTGCACTAAGGCACGCAGGTTCAGCCGGCAGCACAACCGAATTGT
GAAGCAGGAAAGCTCCAGCAGTGAGGACGACGATGGGGAGACCCCCAAACCCTTCTATCAGCTG
CTGGCTGAGAAGGCCCAAGTGTCTTTGGGCCTCACCTCACTGCCCACCCCTCACTGCGAGTAAG
AGGCAGTCCCTGC

hide sequence

RefSeq Acc Id:

XM_017588059 ⟹ XP_017443548

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	1	73,211,377 - 73,235,744 (-)	NCBI

Sequence:

show sequence

TACACCTCCCAACATGCAACATGATGTTGGGTTCCGACAAATTCTCGCGTTTCTCTGATCAGCT
CAGAGCTAGTTCTCCGAGTTCTACTGACAGGAAGGATAAGAAAAACCACACGAACAAACTTCGA
GAACTGGCCATGATGATCCCTGTGACCATGAAGACCAGAAACAAGAAGTACACCAAGAAGGAGA
TCCTGCTGCGTATCCTGCACTACATCCAGTACCTCCAGAGAAACATCGACATGACCAAGGCCTT
GCTCAAGCTCCACAGCAGCAATGGCAAAGATGGATTTGTGGGGCCGGGTGTGAACCCATCTGCT
GGCCAGACAGAGCAGCAACACTCCACCCCCTGCAGCTCTCAGAAGTCAGGCCTTTGGAGCAACT
GTTCAAAACCTCGGAAGAAGAAGTTTACCCAAGTGTCAGAGCGCCCCGCCTGGCCCTGTAAGCC
TCGACGTTCTCTAGCTCTGGACCAATCTGAAAATCCCATCGCCGTATACCCAGCCACACACCCA
GGCCTAAAGGAAGAAAATGAGGAAGGTGTCACCTATCTGGGAGACCTCAGCCCTAGCACCTGCC
CCACAACTGCACCGCCCGTGTCTGAAGGGGACGAACAAGGGGCCCAGCTGGTGTTCTTGGACAT
GGCTCAGAACATCGTTGCCTATGACATCACAAGTGATCATGCTGTAGAAGTCCAGGATGGAGAG
CCCAATGCTGACATCAAAGTTCAGAGGTCCTATTTCCTCACCAGGGCACAGCCCTGTGTCAGTG
AGGCAGACAAAGAAGCCCCAGACACTGACCCCTGGCTTCCTGTTTGGACCTCCGAGGATAGCCC
CAATGGGAGCCCACTGGCTTTGGGGTCTTCCCAGATCAATACCTGGCATGTGGCAAACTACCTG
AATGAGATCTTAGGAGTCAGCTCTTCCCTCTTCAGCTCCCCAAGCAAAATCCTGCCGGATCATG
TCCTGGAGGATGGTACCTACTTTCTGACTGAAGGTCTTTTGGAGTCTTCACCTGCTGCCTGTGA
AGTGGAGGGCCCACAAGAGCAGGAAGCATCCTCTGGAGCCCCCACAGGCCCACCTAACTTCCAA
TCCTCTGTCTCACTGGACCACTGCTACCTGTCGCTGAGTGAGAATGTCAAGGTGCTGTCCAACT
GTGGCTCCAGCTCAGAGTCCACAGACACAGAGTCCTTGTGGGGACAGGAGGAGGTGAGAGGGGT
GGCCACCTACCCAAGGAGGACAGGGGTCTTCTCCCTTGCTCAGCTTTCTGTCTTGCAGCAGGCC
AATCCTGAGGGCTTGCAGACCTCAAGTGATGAGGACAGAGACTACACATGGACACCTACCCGGG
GGTCTTCTGGCCTGCTGGTAGCTAGCAAGAAGATGAAGAAGGTCCAGGCAAGCCAGGGCCCCGA
GAAGCCCAAAGACAGTAGAAAAGCCTGCCCTGGCCAGGTGAAGAAAAAGTGTGTTAATGGCTTC
ATCATGTTCTGCAGGATGAACCGGAAGCAGTACATCCGAGCCTGTCCTGGAACTGCATCCACAG
CTGCCACCAAGGATCTGGCTCAACTGTGGCGAGGGATGACTATGGAAGAAAAGAAACCATACTG
CACTAAGGCACGCAGGTTCAGCCGGCAGCACAACCGAATTGTGAAGCAGGAAAGCTCCAGCAGT
GAGGACGACGATGGGGAGACCCCCAAACCCTTCTATCAGCTGCTGGCTGAGAAGGCCCAAGTGT
CTTTGGGCCTCACCTCACTGCCCACCCCTCACTGCGAGTAAGAGGCAGTCCCTGC

hide sequence

RefSeq Acc Id:

XM_017589998 ⟹ XP_017445487

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	80,004,481 - 80,028,841 (-)	NCBI

Sequence:

show sequence

TACACCTCCCAACATGCAACATGATGTTGGGTTCCGACAAATTCTCGCGTTTCTCTGATCAGCT
CAGAGCTAGTTCTCCGAGTTCTACTGACAGGAAGGATAAGAAAAACCACACGAACAAACTTCGA
GAACTGGCCATGATGATCCCTGTGACCATGAAGACCAGAAACAAGAAGTACACCAAGAAGGAGA
TCCTGCTGCGTATCCTGCACTACATCCAGTACCTCCAGAGAAACATCGACATGACCAAGGCCTT
GCTCAAGCTCCACAGCAGCAATGGCAAAGATGGATTTGTGGGGCCGGGTGTGAACCCATCTGCT
GGCCAGACAGAGCAGCAACACTCCACCCCCTGCAGCTCTCAGAAGTCAGGCCTTTGGAGCAACT
GTTCAAAACCTCGGAAGAAGAAGTTTACCCAAGTGTCAGAGCGCCCCGCCTGGCCCTGTAAGCC
TCGACGTTCTCTAGCTCTGGACCAATCTGAAAATCCCATCGCCGTATACCCAGCCACACACCCA
GGCCTAAAGGAAGAAAATGAGGAAGGTGTCACCTATCTGGGAGACCTCAGCCCTAGCACCTGCC
CCACAACTGCACCGCCCGTGTCTGAAGGGGACGAACAAGGGGCCCAGCTGGTGTTCTTGGACAT
GGCTCAGAACATCGTTGCCTATGACATCACAAGTGATCATGCTGTAGAAGTCCAGGATGGAGAG
CCCAATGCTGACATCAAAGTTCAGAGGTCCTATTTCCTCACCAGGGCACAGCCCTGTGTCAGTG
AGGCAGACAAAGAAGCCCCAGACACTGACCCCTGGCTTCCTGTTTGGACCTCCGAGGATAGCCC
CAATGGGAGCCCACTGGCTTTGGGGTCTTCCCAGATCAATACCTGGCATGTGGCAAACTACCTG
AATGAGATCTTAGGAGTCAGCTCTTCCCTCTTCAGCTCCCCAAGCAAAATCCTGCCGGATCATG
TCCTGGAGGATGGTACCTACTTTCTGACTGAAGGTCTTTTGGAGTCTTCACCTGCTGCCTGTGA
AGTGGAGGGCCCACAAGAGCAGGAAGCATCCTCTGGAGCCCCCACAGGCCCACCTAACTTCCAA
TCCTCTGTCTCACTGGACCACTGCTACCTGTCGCTGAGTGAGAATGTCAAGGTGCTGTCCAACT
GTGGCTCCAGCTCAGAGTCCACAGACACAGAGTCCTTGTGGGGACAGGAGGAGGTGAGAGGGGT
GGCCACCTACCCAAGGAGGACAGGGGTCTTCTCCCTTGCTCAGCTTTCTGTCTTGCAGCAGGCC
AATCCTGAGGGCTTGCAGACCTCAAGTGATGAGGACAGAGACTACACATGGACACCTACCCGGG
GGTCTTCTGGCCTGCTGGTAGCTAGCAAGAAGATGAAGAAGGTCCAGGCAAGCCAGGGCCCCGA
GAAGCCCAAAGACAGTAGAAAAGCCTGCCCTGGCCAGGTGAAGAAAAAGTGTGTTAATGGCTTC
ATCATGTTCTGCAGGATGAACCGGAAGCAGTACATCCGAGCCTGTCCTGGAACTGCATCCACAG
CTGCCACCAAGGATCTGGCTCAACTGTGGCGAGGGATGACTATGGAAGAAAAGAAACCATACTG
CACTAAGGCACGCAGGTTCAGCCGGCAGCACAACCGAATTGTGAAGCAGGAAAGCTCCAGCAGT
GAGGACGACGATGGGGAGACCCCCAAACCCTTCTATCAGCTGCTGGCTGAGAAGGCCCAAGTGT
CTTTGGGCCTCACCTCACTGCCCACCCCTCACTGCGAGTAAGAGGCAGTCCCTGC

hide sequence

RefSeq Acc Id:

XM_039093340 ⟹ XP_038949268

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	78,744,504 - 78,768,102 (-)	NCBI

RefSeq Acc Id:

XM_039093342 ⟹ XP_038949270

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	78,745,722 - 78,768,104 (-)	NCBI

RefSeq Acc Id:

XM_039093349 ⟹ XP_038949277

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	78,745,722 - 78,768,101 (-)	NCBI

RefSeq Acc Id:

XM_039093352 ⟹ XP_038949280

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	78,744,504 - 78,768,102 (-)	NCBI

RefSeq Acc Id:

XM_039093357 ⟹ XP_038949285

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	78,744,504 - 78,768,100 (-)	NCBI

RefSeq Acc Id:

XM_039093359 ⟹ XP_038949287

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	78,745,722 - 78,764,473 (-)	NCBI

RefSeq Acc Id:

XM_039093364 ⟹ XP_038949292

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	78,744,504 - 78,768,101 (-)	NCBI

RefSeq Acc Id:

XM_039093367 ⟹ XP_038949295

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	78,744,504 - 78,768,101 (-)	NCBI

RefSeq Acc Id:

XM_039093370 ⟹ XP_038949298

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	78,744,504 - 78,751,654 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_038949268	(Get FASTA)	NCBI Sequence Viewer
	XP_038949270	(Get FASTA)	NCBI Sequence Viewer
	XP_038949277	(Get FASTA)	NCBI Sequence Viewer
	XP_038949280	(Get FASTA)	NCBI Sequence Viewer
	XP_038949285	(Get FASTA)	NCBI Sequence Viewer
	XP_038949287	(Get FASTA)	NCBI Sequence Viewer
	XP_038949292	(Get FASTA)	NCBI Sequence Viewer
	XP_038949295	(Get FASTA)	NCBI Sequence Viewer
	XP_038949298	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_006223175 ⟸ XM_006223113

- Peptide Label:

isoform X2

- Sequence:

show sequence

MMLGSDKFSRFSDQLRASSPSSTDRKDKKNHTNKLRELAMMIPVTMKTRNKKYTKKEILLRILH
YIQYLQRNIDMTKALLKLHSSNGKDGFVGPGVNPSAGQTEQQHSTPCSSQKSGLWSNCSKPRKK
KFTQVSERPAWPCKPRRSLALDQSENPIAVYPATHPGLKEENEEGVTYLGDLSPSTCPTTAPPV
SEGDEQGAQLVFLDMAQNIVAYDITSDHAVEVQDGEPNADIKVQRSYFLTRAQPCVRQKLFLCT
SSEADKEAPDTDPWLPVWTSEDSPNGSPLALGSSQINTWHVANYLNEILGVSSSLFSSPSKILP
DHVLEDGTYFLTEGLLESSPAACEVEGPQEQEASSGAPTGPPNFQSSVSLDHCYLSLSENVKVL
SNCGSSSESTDTESLWGQEEQANPEGLQTSSDEDRDYTWTPTRGSSGLLVASKKMKKVQASQGP
EKPKDSRKACPGQVKKKCVNGFIMFCRMNRKQYIRACPGTASTAATKDLAQLWRGMTMEEKKPY
CTKARRFSRQHNRIVKQESSSSEDDDGETPKPFYQLLAEKAQVSLGLTSLPTPHCE

hide sequence

RefSeq Acc Id:

XP_006228556 ⟸ XM_006228494

- Peptide Label:

isoform X2

- Sequence:

show sequence

MMLGSDKFSRFSDQLRASSPSSTDRKDKKNHTNKLRELAMMIPVTMKTRNKKYTKKEILLRILH
YIQYLQRNIDMTKALLKLHSSNGKDGFVGPGVNPSAGQTEQQHSTPCSSQKSGLWSNCSKPRKK
KFTQVSERPAWPCKPRRSLALDQSENPIAVYPATHPGLKEENEEGVTYLGDLSPSTCPTTAPPV
SEGDEQGAQLVFLDMAQNIVAYDITSDHAVEVQDGEPNADIKVQRSYFLTRAQPCVRQKLFLCT
SSEADKEAPDTDPWLPVWTSEDSPNGSPLALGSSQINTWHVANYLNEILGVSSSLFSSPSKILP
DHVLEDGTYFLTEGLLESSPAACEVEGPQEQEASSGAPTGPPNFQSSVSLDHCYLSLSENVKVL
SNCGSSSESTDTESLWGQEEQANPEGLQTSSDEDRDYTWTPTRGSSGLLVASKKMKKVQASQGP
EKPKDSRKACPGQVKKKCVNGFIMFCRMNRKQYIRACPGTASTAATKDLAQLWRGMTMEEKKPY
CTKARRFSRQHNRIVKQESSSSEDDDGETPKPFYQLLAEKAQVSLGLTSLPTPHCE

hide sequence

RefSeq Acc Id:

XP_017443548 ⟸ XM_017588059

- Peptide Label:

isoform X1

- Sequence:

show sequence

MMLGSDKFSRFSDQLRASSPSSTDRKDKKNHTNKLRELAMMIPVTMKTRNKKYTKKEILLRILH
YIQYLQRNIDMTKALLKLHSSNGKDGFVGPGVNPSAGQTEQQHSTPCSSQKSGLWSNCSKPRKK
KFTQVSERPAWPCKPRRSLALDQSENPIAVYPATHPGLKEENEEGVTYLGDLSPSTCPTTAPPV
SEGDEQGAQLVFLDMAQNIVAYDITSDHAVEVQDGEPNADIKVQRSYFLTRAQPCVSEADKEAP
DTDPWLPVWTSEDSPNGSPLALGSSQINTWHVANYLNEILGVSSSLFSSPSKILPDHVLEDGTY
FLTEGLLESSPAACEVEGPQEQEASSGAPTGPPNFQSSVSLDHCYLSLSENVKVLSNCGSSSES
TDTESLWGQEEVRGVATYPRRTGVFSLAQLSVLQQANPEGLQTSSDEDRDYTWTPTRGSSGLLV
ASKKMKKVQASQGPEKPKDSRKACPGQVKKKCVNGFIMFCRMNRKQYIRACPGTASTAATKDLA
QLWRGMTMEEKKPYCTKARRFSRQHNRIVKQESSSSEDDDGETPKPFYQLLAEKAQVSLGLTSL
PTPHCE

hide sequence

RefSeq Acc Id:

XP_017445487 ⟸ XM_017589998

- Peptide Label:

isoform X1

- Sequence:

show sequence

MMLGSDKFSRFSDQLRASSPSSTDRKDKKNHTNKLRELAMMIPVTMKTRNKKYTKKEILLRILH
YIQYLQRNIDMTKALLKLHSSNGKDGFVGPGVNPSAGQTEQQHSTPCSSQKSGLWSNCSKPRKK
KFTQVSERPAWPCKPRRSLALDQSENPIAVYPATHPGLKEENEEGVTYLGDLSPSTCPTTAPPV
SEGDEQGAQLVFLDMAQNIVAYDITSDHAVEVQDGEPNADIKVQRSYFLTRAQPCVSEADKEAP
DTDPWLPVWTSEDSPNGSPLALGSSQINTWHVANYLNEILGVSSSLFSSPSKILPDHVLEDGTY
FLTEGLLESSPAACEVEGPQEQEASSGAPTGPPNFQSSVSLDHCYLSLSENVKVLSNCGSSSES
TDTESLWGQEEVRGVATYPRRTGVFSLAQLSVLQQANPEGLQTSSDEDRDYTWTPTRGSSGLLV
ASKKMKKVQASQGPEKPKDSRKACPGQVKKKCVNGFIMFCRMNRKQYIRACPGTASTAATKDLA
QLWRGMTMEEKKPYCTKARRFSRQHNRIVKQESSSSEDDDGETPKPFYQLLAEKAQVSLGLTSL
PTPHCE

hide sequence

RefSeq Acc Id:	XP_038949280 ⟸ XM_039093352
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038949268 ⟸ XM_039093340
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038949295 ⟸ XM_039093367
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038949292 ⟸ XM_039093364
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038949285 ⟸ XM_039093357
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038949298 ⟸ XM_039093370
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038949270 ⟸ XM_039093342
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038949277 ⟸ XM_039093349
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038949287 ⟸ XM_039093359
- Peptide Label:	isoform X5

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:7528935	AgrOrtholog
NCBI Gene	LOC102553424	ENTREZGENE
PhenoGen	Meiosin	PhenoGen

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-06-22	Meiosin	meiosis initiator	Bhmg1	basic helix-loop-helix and HMG-box containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2017-05-18	Bhmg1	basic helix-loop-helix and HMG-box containing 1	LOC102553424	uncharacterized LOC102553424	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-12-17	LOC102553424	uncharacterized LOC102553424			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)