Emc10 (ER membrane protein complex subunit 10) - Rat Genome Database

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Gene: Emc10 (ER membrane protein complex subunit 10) Rattus norvegicus
Analyze
Symbol: Emc10
Name: ER membrane protein complex subunit 10
RGD ID: 1303214
Description: Predicted to contribute to membrane insertase activity. Predicted to be involved in several processes, including positive regulation of endothelial cell proliferation; positive regulation of p38MAPK cascade; and protein insertion into ER membrane. Predicted to be located in extracellular region. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be part of EMC complex. Orthologous to human EMC10 (ER membrane protein complex subunit 10); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC292878; Inm02; MGC93975; similar to 2310044H10Rik protein; UPF0510 protein INM02
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2194,980,260 - 94,988,847 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl194,943,587 - 94,988,847 (-)Ensembl
Rnor_6.01100,495,112 - 100,501,468 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,495,119 - 100,501,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,560,499 - 101,566,862 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4194,967,722 - 94,974,041 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1195,045,832 - 95,052,152 (-)NCBI
Celera189,245,087 - 89,251,415 (-)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:19570817   PMID:22119785   PMID:28931551  


Genomics

Comparative Map Data
Emc10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2194,980,260 - 94,988,847 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl194,943,587 - 94,988,847 (-)Ensembl
Rnor_6.01100,495,112 - 100,501,468 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,495,119 - 100,501,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,560,499 - 101,566,862 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4194,967,722 - 94,974,041 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1195,045,832 - 95,052,152 (-)NCBI
Celera189,245,087 - 89,251,415 (-)NCBICelera
Cytogenetic Map1q22NCBI
EMC10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381950,476,507 - 50,490,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1950,476,400 - 50,490,871 (+)EnsemblGRCh38hg38GRCh38
GRCh371950,979,764 - 50,994,128 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,671,548 - 55,678,420 (+)NCBINCBI36hg18NCBI36
Celera1948,029,877 - 48,036,747 (+)NCBI
Cytogenetic Map19q13.33NCBI
HuRef1947,317,584 - 47,324,456 (+)NCBIHuRef
CHM1_11950,981,479 - 50,988,350 (+)NCBICHM1_1
T2T-CHM13v2.01953,563,993 - 53,578,354 (+)NCBI
Emc10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,139,361 - 44,145,953 (-)NCBIGRCm39mm39
GRCm39 Ensembl744,139,361 - 44,145,953 (-)Ensembl
GRCm38744,489,937 - 44,496,524 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,489,937 - 44,496,529 (-)EnsemblGRCm38mm10GRCm38
MGSCv37751,745,308 - 51,751,883 (-)NCBIGRCm37mm9NCBIm37
MGSCv36744,358,169 - 44,364,450 (-)NCBImm8
Celera739,939,859 - 39,946,434 (-)NCBICelera
Cytogenetic Map7B3NCBI
Emc10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955559672,039 - 676,473 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955559672,055 - 676,569 (-)NCBIChiLan1.0ChiLan1.0
EMC10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11956,341,505 - 56,348,394 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1956,341,503 - 56,352,725 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01947,440,309 - 47,447,199 (+)NCBIMhudiblu_PPA_v0panPan3
EMC10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,254,498 - 106,261,212 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,236,307 - 106,261,113 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1105,827,559 - 105,834,314 (-)NCBI
ROS_Cfam_1.01106,765,525 - 106,772,280 (-)NCBI
ROS_Cfam_1.0 Ensembl1106,764,511 - 106,772,195 (-)Ensembl
UMICH_Zoey_3.11106,437,585 - 106,444,475 (-)NCBI
UNSW_CanFamBas_1.01106,079,193 - 106,085,948 (-)NCBI
UU_Cfam_GSD_1.01106,919,850 - 106,926,607 (-)NCBI
Emc10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,412,714 - 22,420,154 (+)NCBI
SpeTri2.0NW_004936889288,704 - 296,144 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMC10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,316,468 - 55,322,249 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,316,384 - 55,322,251 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2651,165,375 - 51,171,183 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EMC10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,537,612 - 43,544,579 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl643,537,689 - 43,543,435 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607323,525,972 - 23,533,236 (+)NCBIVero_WHO_p1.0
Emc10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,079,515 - 4,084,797 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248324,079,759 - 4,084,880 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH127490  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2194,982,532 - 94,982,715 (+)MAPPERmRatBN7.2
Rnor_6.01100,495,133 - 100,495,315NCBIRnor6.0
Rnor_5.01101,560,520 - 101,560,702UniSTSRnor5.0
RGSC_v3.4194,967,736 - 94,967,918UniSTSRGSC3.4
Celera189,245,101 - 89,245,283UniSTS
RH 3.4 Map1906.4UniSTS
Cytogenetic Map1q22UniSTS
RH135163  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2194,983,193 - 94,984,361 (+)MAPPERmRatBN7.2
Rnor_6.01100,495,794 - 100,496,961NCBIRnor6.0
Rnor_5.01101,561,181 - 101,562,348UniSTSRnor5.0
RGSC_v3.4194,968,398 - 94,969,565UniSTSRGSC3.4
Celera189,245,762 - 89,246,929UniSTS
RH 3.4 Map1904.5UniSTS
Cytogenetic Map1q22UniSTS
RH140214  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2194,983,388 - 94,983,571 (+)MAPPERmRatBN7.2
Rnor_6.01100,495,989 - 100,496,171NCBIRnor6.0
Rnor_5.01101,561,376 - 101,561,558UniSTSRnor5.0
RGSC_v3.4194,968,593 - 94,968,775UniSTSRGSC3.4
Celera189,245,957 - 89,246,139UniSTS
RH 3.4 Map1906.4UniSTS
Cytogenetic Map1q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642722214537671Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)194494440117601394Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:85
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000026445
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000026445   ⟹   ENSRNOP00000026445
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl194,982,519 - 94,988,847 (-)Ensembl
Rnor_6.0 Ensembl1100,495,119 - 100,501,437 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104068   ⟹   ENSRNOP00000086318
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl194,983,563 - 94,988,847 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113891   ⟹   ENSRNOP00000092592
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl194,982,539 - 94,988,779 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114200   ⟹   ENSRNOP00000093178
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl194,943,587 - 94,988,808 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119814   ⟹   ENSRNOP00000077150
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl194,982,541 - 94,988,782 (-)Ensembl
RefSeq Acc Id: NM_001004221   ⟹   NP_001004221
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2194,982,519 - 94,988,847 (-)NCBI
Rnor_6.01100,495,119 - 100,501,447 (-)NCBI
Rnor_5.01101,560,499 - 101,566,862 (-)NCBI
RGSC_v3.4194,967,722 - 94,974,041 (-)RGD
Celera189,245,087 - 89,251,415 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229000   ⟹   XP_006229062
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2194,980,260 - 94,988,842 (-)NCBI
Rnor_6.01100,495,112 - 100,501,468 (-)NCBI
Rnor_5.01101,560,499 - 101,566,862 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229001   ⟹   XP_006229063
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2194,983,365 - 94,988,842 (-)NCBI
Rnor_6.01100,495,965 - 100,501,467 (-)NCBI
Rnor_5.01101,560,499 - 101,566,862 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001004221   ⟸   NM_001004221
- Peptide Label: precursor
- UniProtKB: Q6AYH6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006229062   ⟸   XM_006229000
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006229063   ⟸   XM_006229001
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000026445   ⟸   ENSRNOT00000026445
RefSeq Acc Id: ENSRNOP00000086318   ⟸   ENSRNOT00000104068
RefSeq Acc Id: ENSRNOP00000092592   ⟸   ENSRNOT00000113891
RefSeq Acc Id: ENSRNOP00000077150   ⟸   ENSRNOT00000119814
RefSeq Acc Id: ENSRNOP00000093178   ⟸   ENSRNOT00000114200

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYH6-F1-model_v2 AlphaFold Q6AYH6 1-258 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689998
Promoter ID:EPDNEW_R522
Type:multiple initiation site
Name:Emc10_1
Description:ER membrane protein complex subunit 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01100,501,403 - 100,501,463EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303214 AgrOrtholog
BioCyc Gene G2FUF-59767 BioCyc
Ensembl Genes ENSRNOG00000019532 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000026445 ENTREZGENE
  ENSRNOP00000026445.6 UniProtKB/TrEMBL
  ENSRNOP00000077150 UniProtKB/Swiss-Prot
  ENSRNOP00000086318 ENTREZGENE
  ENSRNOP00000086318.1 UniProtKB/TrEMBL
  ENSRNOP00000092592.1 UniProtKB/TrEMBL
  ENSRNOP00000093178 ENTREZGENE
  ENSRNOP00000093178.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026445 ENTREZGENE
  ENSRNOT00000026445.7 UniProtKB/TrEMBL
  ENSRNOT00000104068 ENTREZGENE
  ENSRNOT00000104068.1 UniProtKB/TrEMBL
  ENSRNOT00000113891.1 UniProtKB/TrEMBL
  ENSRNOT00000114200 ENTREZGENE
  ENSRNOT00000114200.1 UniProtKB/TrEMBL
  ENSRNOT00000119814 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7114835 IMAGE-MGC_LOAD
InterPro Emc10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:292878 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93975 IMAGE-MGC_LOAD
NCBI Gene 292878 ENTREZGENE
PANTHER PTHR21397:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Emc10 PhenoGen
UniProt A0A8I6AHU3_RAT UniProtKB/TrEMBL
  A0A8I6GET4_RAT UniProtKB/TrEMBL
  A0A8I6GK58_RAT UniProtKB/TrEMBL
  A0A8L2QF76_RAT UniProtKB/TrEMBL
  EMC10_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-05 Emc10  ER membrane protein complex subunit 10  MGC93975  similar to 2310044H10Rik protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 MGC93975        Symbol and Name status set to provisional 70820 PROVISIONAL