Dpf1 (double PHD fingers 1) - Rat Genome Database

Name: Dpf1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Dpf1 (double PHD fingers 1) Rattus norvegicus

Analyze

Symbol:

Dpf1

Name:

double PHD fingers 1

RGD ID:

61868

Description:

Predicted to have sequence-specific double-stranded DNA binding activity. Involved in nervous system development. Predicted to localize to nBAF complex. Orthologous to human DPF1 (double PHD fingers 1); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

BAF45B; BRG1-associated factor 45B; D4, zinc and double PHD fingers family 1; Neud4; neuro-d4; neuronal d4 domain family member; zinc finger protein neuro-d4

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DPF1 (double PHD fingers 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Dpf1 (D4, zinc and double PHD fingers family 1)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Dpf1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dpf1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	DPF1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dpf1 (double PHD fingers 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Dpf1 (D4, zinc and double PHD fingers family 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	DPF1 (double PHD fingers 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	dpff-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	d4	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI
Rnor_6.0 Ensembl	1	87,248,489 - 87,258,070 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	87,248,448 - 87,258,070 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	84,444,143 - 84,452,889 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	84,522,204 - 84,531,762 (+)	NCBI
Celera	1	78,992,981 - 79,002,564 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP)

Butylbenzyl phthalate (EXP)

calcitriol (ISO)

cefaloridine (EXP)

choline (ISO)

clozapine (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

diethyl phthalate (EXP)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

dioxygen (ISO)

folic acid (ISO)

glycerol 2-phosphate (ISO)

haloperidol (ISO)

hydrazine (ISO)

L-ascorbic acid (ISO)

L-methionine (ISO)

methapyrilene (ISO)

sunitinib (ISO)

tamoxifen (ISO)

testosterone (ISO)

thapsigargin (ISO)

toluene (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of transcription, DNA-templated (IBA)

nervous system development (IBA,IDA,ISO,ISS)

positive regulation of transcription by RNA polymerase II (IBA)

Cellular Component

cellular_component (ND)

chromatin (IBA)

cytoplasm (IEA)

nBAF complex (IBA,IEA,ISO,ISS)

Molecular Function

histone binding (IBA)

molecular_function (ND)

protein binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

transcription coregulator activity (IBA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

SWI/SNF family mediated chromatin remodeling pathway (ISO)

References

References - curated


1.	Buchman VL, etal., Nucleic Acids Res 1992 Nov 11;20(21):5579-85.
2.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
4.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	RGD automated import pipeline for gene-chemical interactions
6.	RGD comprehensive gene curation
7.	Shain AH and Pollack JR, PLoS One. 2013;8(1):e55119. doi: 10.1371/journal.pone.0055119. Epub 2013 Jan 23.

Additional References at PubMed

PMID:12477932	PMID:17640523	PMID:23785148

Genomics

Comparative Map Data

Dpf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI
Rnor_6.0 Ensembl	1	87,248,489 - 87,258,070 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	87,248,448 - 87,258,070 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	84,444,143 - 84,452,889 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	84,522,204 - 84,531,762 (+)	NCBI
Celera	1	78,992,981 - 79,002,564 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

DPF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	38,211,006 - 38,229,714 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	38,211,006 - 38,229,695 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	38,701,646 - 38,720,335 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	43,394,187 - 43,406,628 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	19	35,503,879 - 35,522,555 (-)	NCBI
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	35,150,952 - 35,163,719 (-)	NCBI		HuRef
CHM1_1	19	38,701,987 - 38,720,686 (-)	NCBI		CHM1_1

Dpf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	29,003,366 - 29,017,017 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	7	29,003,376 - 29,017,668 (+)	Ensembl
GRCm38	7	29,303,952 - 29,317,592 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	29,303,951 - 29,318,243 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	30,089,024 - 30,102,605 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	7	29,012,765 - 29,026,346 (+)	NCBI			mm8
Celera	7	23,874,277 - 23,887,947 (+)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI

Dpf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	1,195,146 - 1,211,311 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	1,195,152 - 1,209,774 (+)	NCBI	ChiLan1.0	ChiLan1.0

DPF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	43,875,879 - 43,888,611 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	43,875,879 - 43,889,021 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	35,301,009 - 35,320,126 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

DPF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	1	114,757,864 - 114,765,602 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	1	114,753,368 - 114,763,965 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Dpf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936801	1,004,841 - 1,013,784 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DPF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	47,142,688 - 47,155,347 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	47,142,006 - 47,155,340 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	42,620,257 - 42,627,472 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DPF1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	32,855,371 - 32,873,889 (-)	NCBI
ChlSab1.1 Ensembl	6	32,856,436 - 32,868,067 (-)	Ensembl

Dpf1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624794	11,700,139 - 11,714,979 (-)	NCBI

Position Markers

BF397080

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	87,252,290 - 87,252,435	NCBI	Rnor6.0
Rnor_5.0	1	88,431,340 - 88,431,485	UniSTS	Rnor5.0
RGSC_v3.4	1	84,447,874 - 84,448,021	UniSTS	RGSC3.4
Celera	1	78,996,782 - 78,996,929	UniSTS
RH 3.4 Map	1	844.1	UniSTS
Cytogenetic Map	1	q21	UniSTS

Dpf1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	87,256,979 - 87,258,017	NCBI	Rnor6.0
Rnor_5.0	1	88,436,029 - 88,437,067	UniSTS	Rnor5.0
Celera	1	79,001,473 - 79,002,511	UniSTS
Cytogenetic Map	1	q21	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5655769	122614963	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	23406428	108057505	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	25951907	130917265	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34993530	173445086	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	35377508	94364229	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	35377692	217372257	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43579208	126240667	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43579208	126240667	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43579208	126240667	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	1	43579208	126240667	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43579208	126240667	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	49147799	156446783	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49578577	94578577	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49578577	169852184	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49578693	217054291	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	50522714	94225616	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	57761301	104391981	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	58209327	103209327	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	58354072	161711996	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	64588516	125875986	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	66113339	122614963	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	67227683	94201552	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	79134941	113593716	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	79689548	124689548	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	79689765	94909507	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	82788437	239853971	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	83502376	128502376	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	83656882	126240667	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	85779320	130779320	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	85917265	130917265	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	86776571	131776571	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	290
Count of miRNA genes:	105
Interacting mature miRNAs:	115
Transcripts:	ENSRNOT00000028091, ENSRNOT00000046435
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									72	4	28
Low	3	28	36	28	1	28		2	2	17	13	11
Below cutoff		15	17	9	18	9	8	9		13			8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC159415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO396551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X66022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000028091 ⟹ ENSRNOP00000028091

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	87,248,489 - 87,258,070 (+)	Ensembl

RefSeq Acc Id:

NM_001105729 ⟹ NP_001099199

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,606,367 - 84,615,950 (+)	NCBI
Rnor_6.0	1	87,248,489 - 87,258,070 (+)	NCBI
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI
RGSC_v3.4	1	84,444,143 - 84,452,889 (+)	RGD
Celera	1	78,992,981 - 79,002,564 (+)	NCBI

Sequence:

show sequence

GGCCTCAGCGCCCGCCCGACCGCTGGGAGGACCGACCCGGCAGGGACCTGCTGGGGGCAGGACC
CGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTGAGCCTTGGCGAGGACTTCTACCGGGA
GGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGTGTGCCGAGCGCAGCCTGCGCCTGCCC
TTCCTCGACTCTCAGACCGGCGTGGCTCAGAACAACTGCTACATCTGGATGGAGAAGACCCACC
GCGGGCCTGGTTTGGCCCCAGGACAGATCTACACTTACCCCGCCCGCTGTTGGAGGAAGAAACG
GAGACTCAACATCCTGGAGGACCCCAGGCTCCGGCCCTGCGAGTACAAGATCGATTGTGAGGCA
CCTCTGAAGAAGGAGGGTGGCCTCCCGGAAGGGCCAGTCCTTGAGGCTCTGCTGTGCGCTGAGA
CTGGAGAGAAGAAAGTGGAGTTGAAGGAGGAGGAGACCATTATGGACTGTCAGAAACAGCAGTT
GCTGGAGTTTCCGCATGATCTCGAGGTAGAAGACTTGGAGGAAGACATTCCCAGGAGGAAGAAC
AGGGCCAAAGGAAAGGCGTATGGCATTGGAGGTCTCCGGAAACGCCAGGACAACGCATCCTTGG
AGGACCGAGACAAGCCGTACGTCTGTGATATCTGTGGGAAGAGGTATAAGAACCGGCCAGGGCT
TAGCTACCACTACACCCACACCCACCTGGCTGAGGAGGAGGGGGAGGAGCACACTGAGCGCCAC
GCCCTGCCTTTCCACCGGAAAAACAACCATAAACAGTTTTACAAAGAATTGGCCTGGGTCCCCG
AGGCACAGAGGAAACACACAGCCAAGAAAGCACCAGATGGCACTGTCATCCCCAATGGCTACTG
TGACTTTTGCCTGGGGGGCTCCAAGAAGACTGGATGTCCTGAGGACCTCATCTCCTGTGCGGAC
TGCGGGCGATCAGGACATCCCTCGTGTTTACAGTTCACGGTGAACATGACCGCAGCCGTGCGGA
CCTACCGCTGGCAGTGTATCGAATGCAAGTCCTGCAGCCTGTGTGGCACCTCGGAGAATGACGA
CCAGCTGCTGTTCTGTGACGACTGCGATCGGGGTTACCACATGTACTGCCTGAGCCCTCCCATG
GCGGAGCCCCCGGAAGGGAGCTGGAGTTGCCACCTCTGTCTCCGGCACTTGAAAGAAAAGGCCT
CCGCTTACATCACCCTGACTTAGACCTGGCTCTGCTTCTCCAGGACCTTTGGGTGGTGCTATCC
TCGGCCTCTTGGAGCTCCTGACTTTTCCCGCCTGGTGTCCCCAGTGGAAGGGATAGGGTGAAGC
CCAGAGAGGGGCCAAGGCGGTCTCCCTCTGCAAGTGGAATGTTACCCTGAGGGAGGGTGGGTCC
AGCAGGGTCCCTCCTGTCCCCCATCTTCATTCCTTGACAAGTGGGCACCAGGCTTCTGCTCCCC
TCAAAGCCATACCCCGCCTCTGGGCGGGCATAGAGGGGTAGTGGATGCCAGCCAGTGGCACGGA
AAAAGCCTTTTTCTAAAGAAAAAGACAAAACGTGAAAAAAAAAAAAGGAAAAAAAAAAAGAAAT
TAATATATACAAAGATTCCTCTAAGCCTGGCTGGGTGGGGGGCCACTGAGTGTCTGCTGGGACC
TGACTTTACCAGTTTCCTGAATGGCCCCTCCCCACCCCATTTCTGGAGTTGCAATTGTCTCAAC
TCCCATCTGAGGTGGGTACCACACCTTCCTCACAGCCAGGCCAGGTGGGCATGGTGCCCACACA
CTGCCCCCTCCCGGTACCCACCGTGGATACTGCATGATGTGAACCATGGTTTTGAACTCTTCCT
GCCCCTCCTTTGAGAGCCCCGCCCTGCGCCCACCCGGTGCCTGCCAGACCTGGGGCTTGCAGCT
GGGGGAGGCCGGTGGGGTGAGGCAGGCAGGCAGGCAGCCAGCCCGCTGCAATGAGAAGAAGCAC
AGATTGCAATGGACTCAGTTGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTTCTTTCTTT
CTCCCTTCTCAACCCTTTCCTTCCCTACCCAGCCAGGCTGGGCTGCCTCCTTCCCCCCATCGCT
AGCCATTTTGGGGGTGGCAAGGAGGTGTGGTCGTTTCTCGTGGTTGTGTGTGTTTGTTGTTCGG
GTTTTAAAAAAGGGAAATTGAGACTGCAAGTGGGGGGAGGTGGAGGGTCTGGGGGAGTCTGCCC
CCCAACCCAGGAGTACCCCCCTTGCCACCAAGTCTCCTTTATTGCCTGCCTCTGCTGTGAATTA
ACTTGTTCTGTGTATTAAACTGGGCCGGACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_006228677 ⟹ XP_006228739

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	87,248,448 - 87,258,070 (+)	NCBI
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI

Sequence:

show sequence

AGATCCTCGTGCTCCCGCCCCCCGGGAATGAATGGATGGGCGGCCTCAGCGCCCGCCCGACCGC
TGGGAGGACCGACCCGGCAGGGACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTC
ATCCCCAGCCCCCTGAGGTGCCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACTGCCGCA
GCTACAACGCGCGCCTGTGTGCCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCTCAGACCGG
CGTGGCTCAGAACAACTGCTACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTGGCCCCA
GGACAGATCTACACTTACCCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTGGAGG
ACCCCAGGCTCCGGCCCTGCGAGTACAAGATCGATTGTGAGGCACCTCTGAAGAAGGAGGGTGG
CCTCCCGGAAGGGCCAGTCCTTGAGGCTCTGCTGTGCGCTGAGACTGGAGAGAAGAAAGTGGAG
TTGAAGGAGGAGGAGACCATTATGGACTGTCAGAAACAGCAGTTGCTGGAGTTTCCGCATGATC
TCGAGGTAGAAGACTTGGAGGAAGACATTCCCAGGAGGAAGAACAGGGCCAAAGGAAAGGCGTA
TGGCATTGGAGGTCTCCGGAAACGCCAGGACAACGCATCCTTGGAGGACCGAGACAAGCCGTAC
GTCTGTGATATCTGTGGGAAGAGGTATAAGAACCGGCCAGGGCTTAGCTACCACTACACCCACA
CCCACCTGGCTGAGGAGGAGGGGGAGGAGCACACTGAGCGCCACGCCCTGCCTTTCCACCGGAA
AAACAACCATAAACAGTTTTACAAAGAATTGGCCTGGGTCCCCGAGGCACAGAGGAAACACACA
GCCAAGAAAGCACCAGATGGCACTGTCATCCCCAATGGCTACTGTGACTTTTGCCTGGGGGGCT
CCAAGAAGACTGGATGTCCTGAGGACCTCATCTCCTGTGCGGACTGCGGGCGATCAGGACATCC
CTCGTGTTTACAGTTCACGGTGAACATGACCGCAGCCGTGCGGACCTACCGCTGGCAGTGTATC
GAATGCAAGTCCTGCAGCCTGTGTGGCACCTCGGAGAATGACGGTGCCAGCTGGGCGGGTCTCA
CCCCCCAGGACCAGCTGCTGTTCTGTGACGACTGCGATCGGGGTTACCACATGTACTGCCTGAG
CCCTCCCATGGCGGAGCCCCCGGAAGGGAGCTGGAGTTGCCACCTCTGTCTCCGGCACTTGAAA
GAAAAGGCCTCCGCTTACATCACCCTGACTTAGACCTGGCTCTGCTTCTCCAGGACCTTTGGGT
GGTGCTATCCTCGGCCTCTTGGAGCTCCTGACTTTTCCCGCCTGGTGTCCCCAGTGGAAGGGAT
AGGGTGAAGCCCAGAGAGGGGCCAAGGCGGTCTCCCTCTGCAAGTGGAATGTTACCCTGAGGGA
GGGTGGGTCCAGCAGGGTCCCTCCTGTCCCCCATCTTCATTCCTTGACAAGTGGGCACCAGGCT
TCTGCTCCCCTCAAAGCCATACCCCGCCTCTGGGCGGGCATAGAGGGGTAGTGGATGCCAGCCA
GTGGCACGGAAAAAGCCTTTTTCTAAAGAAAAAGACAAAACGTGAAAAAAAAAAAAGGAAAAAA
AAAAAGAAATTAATATATACAAAGATTCCTCTAAGCCTGGCTGGGTGGGGGGCCACTGAGTGTC
TGCTGGGACCTGACTTTACCAGTTTCCTGAATGGCCCCTCCCCACCCCATTTCTGGAGTTGCAA
TTGTCTCAACTCCCATCTGAGGTGGGTACCACACCTTCCTCACAGCCAGGCCAGGTGGGCATGG
TGCCCACACACTGCCCCCTCCCGGTACCCACCGTGGATACTGCATGATGTGAACCATGGTTTTG
AACTCTTCCTGCCCCTCCTTTGAGAGCCCCGCCCTGCGCCCACCCGGTGCCTGCCAGACCTGGG
GCTTGCAGCTGGGGGAGGCCGGTGGGGTGAGGCAGGCAGGCAGGCAGCCAGCCCGCTGCAATGA
GAAGAAGCACAGATTGCAATGGACTCAGTTGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTT
TTCTTTCTTTCTCCCTTCTCAACCCTTTCCTTCCCTACCCAGCCAGGCTGGGCTGCCTCCTTCC
CCCCATCGCTAGCCATTTTGGGGGTGGCAAGGAGGTGTGGTCGTTTCTCGTGGTTGTGTGTGTT
TGTTGTTCGGGTTTTAAAAAAGGGAAATTGAGACTGCAAGTGGGGGGAGGTGGAGGGTCTGGGG
GAGTCTGCCCCCCAACCCAGGAGTACCCCCCTTGCCACCAAGTCTCCTTTATTGCCTGCCTCTG
CTGTGAATTAACTTGTTCTGTGTATTAAACTGGGCCGGACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_006228678 ⟹ XP_006228740

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,606,307 - 84,615,954 (+)	NCBI
Rnor_6.0	1	87,248,465 - 87,258,070 (+)	NCBI
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI

Sequence:

show sequence

CCCCCCGGGAATGAATGGATGGGCGGCCTCAGCGCCCGCCCGACCGCTGGGAGGACCGACCCGG
CAGGGACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTGAG
CCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGTGT
GCCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCTCAGACCGGCGTGGCTCAGAACAACTGCT
ACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTGGCCCCAGGACAGATCTACACTTACCC
CGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTGGAGGACCCCAGGCTCCGGCCCTGC
GAGTACAAGATCGATTGTGAGGCACCTCTGAAGAAGGAGGGTGGCCTCCCGGAAGGGCCAGTCC
TTGAGGCTCTGCTGTGCGCTGAGACTGGAGAGAAGAAAGTGGAGTTGAAGGAGGAGGAGACCAT
TATGGACTGTCAGAAACAGCAGTTGCTGGAGTTTCCGCATGATCTCGAGGTAGAAGACTTGGAG
GAAGACATTCCCAGGAGGAAGAACAGGGCCAAAGGAAAGGCGTATGGCATTGGAGGTCTCCGGA
AACGCCAGGACAACGCATCCTTGGAGGACCGAGACAAGCCGTACGTCTGTGATATCTGTGGGAA
GAGGTATAAGAACCGGCCAGGGCTTAGCTACCACTACACCCACACCCACCTGGCTGAGGAGGAG
GGGGAGGAGCACACTGAGCGCCACGCCCTGCCTTTCCACCGGAAAAACAACCATAAACAGTTTT
ACAAAGAATTGGCCTGGGTCCCCGAGGCACAGAGGAAACACACAGCCAAGAAAGCACCAGATGG
CACTGTCATCCCCAATGGCTACTGTGACTTTTGCCTGGGGGGCTCCAAGAAGACTGGATGTCCT
GAGGACCTCATCTCCTGTGCGGACTGCGGGCGATCAGGACATCCCTCGTGTTTACAGTTCACGG
TGAACATGACCGCAGCCGTGCGGACCTACCGCTGGCAGTGTATCGAATGCAAGTCCTGCAGCCT
GTGTGGCACCTCGGAGAATGACGGTGCCAGCTGGGCGGGTCTCACCCCCCAGGACCAGCTGCTG
TTCTGTGACGACTGCGATCGGGGTTACCACATGTACTGCCTGAGCCCTCCCATGGCGGAGCCCC
CGGAAGGGAGCTGGAGTTGCCACCTCTGTCTCCGGCACTTGAAAGAAAAGGCCTCCGCTTACAT
CACCCTGACTTAGACCTGGCTCTGCTTCTCCAGGACCTTTGGGTGGTGCTATCCTCGGCCTCTT
GGAGCTCCTGACTTTTCCCGCCTGGTGTCCCCAGTGGAAGGGATAGGGTGAAGCCCAGAGAGGG
GCCAAGGCGGTCTCCCTCTGCAAGTGGAATGTTACCCTGAGGGAGGGTGGGTCCAGCAGGGTCC
CTCCTGTCCCCCATCTTCATTCCTTGACAAGTGGGCACCAGGCTTCTGCTCCCCTCAAAGCCAT
ACCCCGCCTCTGGGCGGGCATAGAGGGGTAGTGGATGCCAGCCAGTGGCACGGAAAAAGCCTTT
TTCTAAAGAAAAAGACAAAACGTGAAAAAAAAAAAAGGAAAAAAAAAAAGAAATTAATATATAC
AAAGATTCCTCTAAGCCTGGCTGGGTGGGGGGCCACTGAGTGTCTGCTGGGACCTGACTTTACC
AGTTTCCTGAATGGCCCCTCCCCACCCCATTTCTGGAGTTGCAATTGTCTCAACTCCCATCTGA
GGTGGGTACCACACCTTCCTCACAGCCAGGCCAGGTGGGCATGGTGCCCACACACTGCCCCCTC
CCGGTACCCACCGTGGATACTGCATGATGTGAACCATGGTTTTGAACTCTTCCTGCCCCTCCTT
TGAGAGCCCCGCCCTGCGCCCACCCGGTGCCTGCCAGACCTGGGGCTTGCAGCTGGGGGAGGCC
GGTGGGGTGAGGCAGGCAGGCAGGCAGCCAGCCCGCTGCAATGAGAAGAAGCACAGATTGCAAT
GGACTCAGTTGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTTCTTTCTTTCTCCCTTCTC
AACCCTTTCCTTCCCTACCCAGCCAGGCTGGGCTGCCTCCTTCCCCCCATCGCTAGCCATTTTG
GGGGTGGCAAGGAGGTGTGGTCGTTTCTCGTGGTTGTGTGTGTTTGTTGTTCGGGTTTTAAAAA
AGGGAAATTGAGACTGCAAGTGGGGGGAGGTGGAGGGTCTGGGGGAGTCTGCCCCCCAACCCAG
GAGTACCCCCCTTGCCACCAAGTCTCCTTTATTGCCTGCCTCTGCTGTGAATTAACTTGTTCTG
TGTATTAAACTGGGCCGGACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_006228679 ⟹ XP_006228741

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	87,248,469 - 87,258,070 (+)	NCBI
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI

Sequence:

show sequence

CCGGGAATGAATGGATGGGCGGCCTCAGCGCCCGCCCGACCGCTGGGAGGACCGACCCGGCAGG
GACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTGAGGTGC
CTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGTGTG
CCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCTCAGACCGGCGTGGCTCAGAACAACTGCTA
CATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTGGCCCCAGGACAGATCTACACTTACCCC
GCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTGGAGGACCCCAGGCTCCGGCCCTGCG
AGTACAAGATCGATTGTGAGGCACCTCTGAAGAAGGAGGGTGGCCTCCCGGAAGGGCCAGTCCT
TGAGGCTCTGCTGTGCGCTGAGACTGGAGAGAAGAAAGTGGAGTTGAAGGAGGAGGAGACCATT
ATGGACTGTCAGAAACAGCAGTTGCTGGAGTTTCCGCATGATCTCGAGGTAGAAGACTTGGAGG
AAGACATTCCCAGGAGGAAGAACAGGGCCAAAGGAAAGGCGTATGGCATTGGAGGTCTCCGGAA
ACGCCAGGACAACGCATCCTTGGAGGACCGAGACAAGCCGTACGTCTGTGATATCTGTGGGAAG
AGGTATAAGAACCGGCCAGGGCTTAGCTACCACTACACCCACACCCACCTGGCTGAGGAGGAGG
GGGAGGAGCACACTGAGCGCCACGCCCTGCCTTTCCACCGGAAAAACAACCATAAACAGTTTTA
CAAAGAATTGGCCTGGGTCCCCGAGGCACAGAGGAAACACACAGCCAAGAAAGCACCAGATGGC
ACTGTCATCCCCAATGGCTACTGTGACTTTTGCCTGGGGGGCTCCAAGAAGACTGGATGTCCTG
AGGACCTCATCTCCTGTGCGGACTGCGGGCGATCAGGACATCCCTCGTGTTTACAGTTCACGGT
GAACATGACCGCAGCCGTGCGGACCTACCGCTGGCAGTGTATCGAATGCAAGTCCTGCAGCCTG
TGTGGCACCTCGGAGAATGACGACCAGCTGCTGTTCTGTGACGACTGCGATCGGGGTTACCACA
TGTACTGCCTGAGCCCTCCCATGGCGGAGCCCCCGGAAGGGAGCTGGAGTTGCCACCTCTGTCT
CCGGCACTTGAAAGAAAAGGCCTCCGCTTACATCACCCTGACTTAGACCTGGCTCTGCTTCTCC
AGGACCTTTGGGTGGTGCTATCCTCGGCCTCTTGGAGCTCCTGACTTTTCCCGCCTGGTGTCCC
CAGTGGAAGGGATAGGGTGAAGCCCAGAGAGGGGCCAAGGCGGTCTCCCTCTGCAAGTGGAATG
TTACCCTGAGGGAGGGTGGGTCCAGCAGGGTCCCTCCTGTCCCCCATCTTCATTCCTTGACAAG
TGGGCACCAGGCTTCTGCTCCCCTCAAAGCCATACCCCGCCTCTGGGCGGGCATAGAGGGGTAG
TGGATGCCAGCCAGTGGCACGGAAAAAGCCTTTTTCTAAAGAAAAAGACAAAACGTGAAAAAAA
AAAAAGGAAAAAAAAAAAGAAATTAATATATACAAAGATTCCTCTAAGCCTGGCTGGGTGGGGG
GCCACTGAGTGTCTGCTGGGACCTGACTTTACCAGTTTCCTGAATGGCCCCTCCCCACCCCATT
TCTGGAGTTGCAATTGTCTCAACTCCCATCTGAGGTGGGTACCACACCTTCCTCACAGCCAGGC
CAGGTGGGCATGGTGCCCACACACTGCCCCCTCCCGGTACCCACCGTGGATACTGCATGATGTG
AACCATGGTTTTGAACTCTTCCTGCCCCTCCTTTGAGAGCCCCGCCCTGCGCCCACCCGGTGCC
TGCCAGACCTGGGGCTTGCAGCTGGGGGAGGCCGGTGGGGTGAGGCAGGCAGGCAGGCAGCCAG
CCCGCTGCAATGAGAAGAAGCACAGATTGCAATGGACTCAGTTGTTTTTTGTTTTTTGTTTTTG
TTTTTGTTTTTTTTTCTTTCTTTCTCCCTTCTCAACCCTTTCCTTCCCTACCCAGCCAGGCTGG
GCTGCCTCCTTCCCCCCATCGCTAGCCATTTTGGGGGTGGCAAGGAGGTGTGGTCGTTTCTCGT
GGTTGTGTGTGTTTGTTGTTCGGGTTTTAAAAAAGGGAAATTGAGACTGCAAGTGGGGGGAGGT
GGAGGGTCTGGGGGAGTCTGCCCCCCAACCCAGGAGTACCCCCCTTGCCACCAAGTCTCCTTTA
TTGCCTGCCTCTGCTGTGAATTAACTTGTTCTGTGTATTAAACTGGGCCGGACCCCTCTGCCCA
CAAC

hide sequence

RefSeq Acc Id:

XM_006228681 ⟹ XP_006228743

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	87,248,468 - 87,258,070 (+)	NCBI
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI

Sequence:

show sequence

CCCGGGAATGAATGGATGGGCGGCCTCAGCGCCCGCCCGACCGCTGGGAGGACCGACCCGGCAG
GGACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTGAGGTG
CCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCCTGTGT
GCCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCTCAGACCGGCGTGGCTCAGAACAACTGCT
ACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTGGCCCCAGGACAGATCTACACTTACCC
CGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTGGAGGACCCCAGGCTCCGGCCCTGC
GAGTACAAGATCGATTGTGAGGCACCTCTGAAGAAGGAGGGTGGCCTCCCGGAAGGGCCAGTCC
TTGAGGCTCTGCTGTGCGCTGAGACTGGAGAGAAGAAAGTGGAGTTGAAGGAGGAGGAGACCAT
TATGGACTGTCAGAAACAGCAGTTGCTGGAGTTTCCGCATGATCTCGAGGTAGAAGACTTGGAG
GAAGACATTCCCAGGAGGAAGAACAGGGCCAAAGGAAAGGCGTATGGCATTGGAGGTCTCCGGA
AACGCCAGGACAACGCATCCTTGGAGGACCGAGACAAGCCGTACGTCTGTGATATCTGTGGGAA
GAGGTATAAGAACCGGCCAGGGCTTAGCTACCACTACACCCACACCCACCTGGCTGAGGAGGAG
GGGGAGGAGCACACTGAGCGCCACGCCCTGCCTTTCCACCGGAAAAACAACCATAAACCCAAGA
AAGCACCAGATGGCACTGTCATCCCCAATGGCTACTGTGACTTTTGCCTGGGGGGCTCCAAGAA
GACTGGATGTCCTGAGGACCTCATCTCCTGTGCGGACTGCGGGCGATCAGGACATCCCTCGTGT
TTACAGTTCACGGTGAACATGACCGCAGCCGTGCGGACCTACCGCTGGCAGTGTATCGAATGCA
AGTCCTGCAGCCTGTGTGGCACCTCGGAGAATGACGACCAGCTGCTGTTCTGTGACGACTGCGA
TCGGGGTTACCACATGTACTGCCTGAGCCCTCCCATGGCGGAGCCCCCGGAAGGGAGCTGGAGT
TGCCACCTCTGTCTCCGGCACTTGAAAGAAAAGGCCTCCGCTTACATCACCCTGACTTAGACCT
GGCTCTGCTTCTCCAGGACCTTTGGGTGGTGCTATCCTCGGCCTCTTGGAGCTCCTGACTTTTC
CCGCCTGGTGTCCCCAGTGGAAGGGATAGGGTGAAGCCCAGAGAGGGGCCAAGGCGGTCTCCCT
CTGCAAGTGGAATGTTACCCTGAGGGAGGGTGGGTCCAGCAGGGTCCCTCCTGTCCCCCATCTT
CATTCCTTGACAAGTGGGCACCAGGCTTCTGCTCCCCTCAAAGCCATACCCCGCCTCTGGGCGG
GCATAGAGGGGTAGTGGATGCCAGCCAGTGGCACGGAAAAAGCCTTTTTCTAAAGAAAAAGACA
AAACGTGAAAAAAAAAAAAGGAAAAAAAAAAAGAAATTAATATATACAAAGATTCCTCTAAGCC
TGGCTGGGTGGGGGGCCACTGAGTGTCTGCTGGGACCTGACTTTACCAGTTTCCTGAATGGCCC
CTCCCCACCCCATTTCTGGAGTTGCAATTGTCTCAACTCCCATCTGAGGTGGGTACCACACCTT
CCTCACAGCCAGGCCAGGTGGGCATGGTGCCCACACACTGCCCCCTCCCGGTACCCACCGTGGA
TACTGCATGATGTGAACCATGGTTTTGAACTCTTCCTGCCCCTCCTTTGAGAGCCCCGCCCTGC
GCCCACCCGGTGCCTGCCAGACCTGGGGCTTGCAGCTGGGGGAGGCCGGTGGGGTGAGGCAGGC
AGGCAGGCAGCCAGCCCGCTGCAATGAGAAGAAGCACAGATTGCAATGGACTCAGTTGTTTTTT
GTTTTTTGTTTTTGTTTTTGTTTTTTTTTCTTTCTTTCTCCCTTCTCAACCCTTTCCTTCCCTA
CCCAGCCAGGCTGGGCTGCCTCCTTCCCCCCATCGCTAGCCATTTTGGGGGTGGCAAGGAGGTG
TGGTCGTTTCTCGTGGTTGTGTGTGTTTGTTGTTCGGGTTTTAAAAAAGGGAAATTGAGACTGC
AAGTGGGGGGAGGTGGAGGGTCTGGGGGAGTCTGCCCCCCAACCCAGGAGTACCCCCCTTGCCA
CCAAGTCTCCTTTATTGCCTGCCTCTGCTGTGAATTAACTTGTTCTGTGTATTAAACTGGGCCG
GACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_006228684 ⟹ XP_006228746

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	87,248,463 - 87,258,070 (+)	NCBI
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI

Sequence:

show sequence

CGCCCCCCGGGAATGAATGGATGGGCGGCCTCAGCGCCCGCCCGACCGCTGGGAGGACCGACCC
GGCAGGGACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTCATCCCCAGCCCCCTG
AGGTGCCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCC
TGTGTGCCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCTCAGACCGGCGTGGCTCAGAACAA
CTGCTACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTGGCCCCAGGACAGATCTACACT
TACCCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTGGAGGACCCCAGGCTCCGGC
CCTGCGAGTACAAGATCGATTGTGAGGCACCTCTGAAGAAGGAGGGTGGCCTCCCGGAAGGGCC
AGTCCTTGAGGCTCTGCTGTGCGCTGAGACTGGAGAGAAGAAAGTGGAGTTGAAGGAGGAGGAG
ACCATTATGGACTGTCAGGCGTATGGCATTGGAGGTCTCCGGAAACGCCAGGACAACGCATCCT
TGGAGGACCGAGACAAGCCGTACGTCTGTGATATCTGTGGGAAGAGGTATAAGAACCGGCCAGG
GCTTAGCTACCACTACACCCACACCCACCTGGCTGAGGAGGAGGGGGAGGAGCACACTGAGCGC
CACGCCCTGCCTTTCCACCGGAAAAACAACCATAAACCCAAGAAAGCACCAGATGGCACTGTCA
TCCCCAATGGCTACTGTGACTTTTGCCTGGGGGGCTCCAAGAAGACTGGATGTCCTGAGGACCT
CATCTCCTGTGCGGACTGCGGGCGATCAGGACATCCCTCGTGTTTACAGTTCACGGTGAACATG
ACCGCAGCCGTGCGGACCTACCGCTGGCAGTGTATCGAATGCAAGTCCTGCAGCCTGTGTGGCA
CCTCGGAGAATGACGGTGCCAGCTGGGCGGGTCTCACCCCCCAGGACCAGCTGCTGTTCTGTGA
CGACTGCGATCGGGGTTACCACATGTACTGCCTGAGCCCTCCCATGGCGGAGCCCCCGGAAGGG
AGCTGGAGTTGCCACCTCTGTCTCCGGCACTTGAAAGAAAAGGCCTCCGCTTACATCACCCTGA
CTTAGACCTGGCTCTGCTTCTCCAGGACCTTTGGGTGGTGCTATCCTCGGCCTCTTGGAGCTCC
TGACTTTTCCCGCCTGGTGTCCCCAGTGGAAGGGATAGGGTGAAGCCCAGAGAGGGGCCAAGGC
GGTCTCCCTCTGCAAGTGGAATGTTACCCTGAGGGAGGGTGGGTCCAGCAGGGTCCCTCCTGTC
CCCCATCTTCATTCCTTGACAAGTGGGCACCAGGCTTCTGCTCCCCTCAAAGCCATACCCCGCC
TCTGGGCGGGCATAGAGGGGTAGTGGATGCCAGCCAGTGGCACGGAAAAAGCCTTTTTCTAAAG
AAAAAGACAAAACGTGAAAAAAAAAAAAGGAAAAAAAAAAAGAAATTAATATATACAAAGATTC
CTCTAAGCCTGGCTGGGTGGGGGGCCACTGAGTGTCTGCTGGGACCTGACTTTACCAGTTTCCT
GAATGGCCCCTCCCCACCCCATTTCTGGAGTTGCAATTGTCTCAACTCCCATCTGAGGTGGGTA
CCACACCTTCCTCACAGCCAGGCCAGGTGGGCATGGTGCCCACACACTGCCCCCTCCCGGTACC
CACCGTGGATACTGCATGATGTGAACCATGGTTTTGAACTCTTCCTGCCCCTCCTTTGAGAGCC
CCGCCCTGCGCCCACCCGGTGCCTGCCAGACCTGGGGCTTGCAGCTGGGGGAGGCCGGTGGGGT
GAGGCAGGCAGGCAGGCAGCCAGCCCGCTGCAATGAGAAGAAGCACAGATTGCAATGGACTCAG
TTGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTTCTTTCTTTCTCCCTTCTCAACCCTTT
CCTTCCCTACCCAGCCAGGCTGGGCTGCCTCCTTCCCCCCATCGCTAGCCATTTTGGGGGTGGC
AAGGAGGTGTGGTCGTTTCTCGTGGTTGTGTGTGTTTGTTGTTCGGGTTTTAAAAAAGGGAAAT
TGAGACTGCAAGTGGGGGGAGGTGGAGGGTCTGGGGGAGTCTGCCCCCCAACCCAGGAGTACCC
CCCTTGCCACCAAGTCTCCTTTATTGCCTGCCTCTGCTGTGAATTAACTTGTTCTGTGTATTAA
ACTGGGCCGGACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_006228685 ⟹ XP_006228747

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,606,395 - 84,615,954 (+)	NCBI
Rnor_6.0	1	87,248,512 - 87,258,070 (+)	NCBI
Rnor_5.0	1	88,426,945 - 88,437,120 (+)	NCBI

Sequence:

show sequence

TGGGAGGACCGACCCGGCAGGGACCTGCTGGGGGCAGGACCCGGGGAGCAAGATGGCCACGGTC
ATCCCCAGCCCCCTGAGGTGGTGCGGGCGTGCGCGAGGCGGGGGAGTCAGCGCGGGCGAGTCTG
TGTGGCTGCGAGTGCGTGTGTGTGTATGTGTGCGGCCGCTGGGGGTGGGGCTGGTGGGGTGTCA
GGGGGCTGTCACCGCGTGCGGGGGTGCGAGTGTATGTGACTGTGGGTGTCTGGCAAGAATGGTG
TACGACGCGTTGCTCCTGGACGGGTGGAGGGCGTGGGGGAGGGGTCTCCAAGGATTTTTAGGGG
AAAGGGGTCATGTCCCCTCCCAGGGATGCTAGGGTTTGAGAGAGGGTAAATGATTTAGAGAAGA
TGGGGCCTGGGTACACTCGAGTCGAACCCACGCTACCTTTGTCTTGGGGTGTGGAGTGTGTTGT
GAGACTTATACATTGCTTTTTGTTTTGTAGCTGAATGTGTGGGTATGTATAGGATTTCTTTTAT
TCTGCACTACCTATCTGAGTATTTGGGTCTCTAAGTGTGTGCACATGTCTGGTGAAACTGCACC
ATTTATGTTCCGTGTCTCTGGATAGGGAGCTGTAGGGATAGGTCTAAATATTTGCACGAACAGA
GGCAGACCGGACTGTCCCTCTGTTTCCAAGGGGTGTACCTGTGTTTGTGAATGTATTTTAAATT
TGGGTTTGTTTTTCCCCGGAGGGTGTGAATGTGTGTATGTGTACCTGTATAAATCTCTGTGATG
TCTTTGTATTGTGTGTTTGGCTGAAGTGTCTCTGGATGAATATGTAAGCGCATATGTAAATGAT
TCTAGGGTCCCTATCTTTTGACAACGTGTGACTGTTGGGATGAGTGTTGTGTGGTGTGTTTCCA
TGTTGTGGGGCTTTGTGGATAATCTTCCTCTGGACACATCTGGGGTCTCTGGATACATGGCATT
CATAGCCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACTGCCGCAGCTACAACGCGCGCC
TGTGTGCCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCTCAGACCGGCGTGGCTCAGAACAA
CTGCTACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTGGCCCCAGGACAGATCTACACT
TACCCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTGGAGGACCCCAGGCTCCGGC
CCTGCGAGTACAAGATCGATTGTGAGGCACCTCTGAAGAAGGAGGGTGGCCTCCCGGAAGGGCC
AGTCCTTGAGGCTCTGCTGTGCGCTGAGACTGGAGAGAAGAAAGTGGAGTTGAAGGAGGAGGAG
ACCATTATGGACTGTCAGAAACAGCAGTTGCTGGAGTTTCCGCATGATCTCGAGGTAGAAGACT
TGGAGGAAGACATTCCCAGGAGGAAGAACAGGGCCAAAGGAAAGGCGTATGGCATTGGAGGTCT
CCGGAAACGCCAGGACAACGCATCCTTGGAGGACCGAGACAAGCCGTACGTCTGTGATATCTGT
GGGAAGAGGTATAAGAACCGGCCAGGGCTTAGCTACCACTACACCCACACCCACCTGGCTGAGG
AGGAGGGGGAGGAGCACACTGAGCGCCACGCCCTGCCTTTCCACCGGAAAAACAACCATAAACA
GTTTTACAAAGAATTGGCCTGGGTCCCCGAGGCACAGAGGAAACACACAGCCAAGAAAGCACCA
GATGGCACTGTCATCCCCAATGGCTACTGTGACTTTTGCCTGGGGGGCTCCAAGAAGACTGGAT
GTCCTGAGGACCTCATCTCCTGTGCGGACTGCGGGCGATCAGGACATCCCTCGTGTTTACAGTT
CACGGTGAACATGACCGCAGCCGTGCGGACCTACCGCTGGCAGTGTATCGAATGCAAGTCCTGC
AGCCTGTGTGGCACCTCGGAGAATGACGGTGCCAGCTGGGCGGGTCTCACCCCCCAGGACCAGC
TGCTGTTCTGTGACGACTGCGATCGGGGTTACCACATGTACTGCCTGAGCCCTCCCATGGCGGA
GCCCCCGGAAGGGAGCTGGAGTTGCCACCTCTGTCTCCGGCACTTGAAAGAAAAGGCCTCCGCT
TACATCACCCTGACTTAGACCTGGCTCTGCTTCTCCAGGACCTTTGGGTGGTGCTATCCTCGGC
CTCTTGGAGCTCCTGACTTTTCCCGCCTGGTGTCCCCAGTGGAAGGGATAGGGTGAAGCCCAGA
GAGGGGCCAAGGCGGTCTCCCTCTGCAAGTGGAATGTTACCCTGAGGGAGGGTGGGTCCAGCAG
GGTCCCTCCTGTCCCCCATCTTCATTCCTTGACAAGTGGGCACCAGGCTTCTGCTCCCCTCAAA
GCCATACCCCGCCTCTGGGCGGGCATAGAGGGGTAGTGGATGCCAGCCAGTGGCACGGAAAAAG
CCTTTTTCTAAAGAAAAAGACAAAACGTGAAAAAAAAAAAAGGAAAAAAAAAAAGAAATTAATA
TATACAAAGATTCCTCTAAGCCTGGCTGGGTGGGGGGCCACTGAGTGTCTGCTGGGACCTGACT
TTACCAGTTTCCTGAATGGCCCCTCCCCACCCCATTTCTGGAGTTGCAATTGTCTCAACTCCCA
TCTGAGGTGGGTACCACACCTTCCTCACAGCCAGGCCAGGTGGGCATGGTGCCCACACACTGCC
CCCTCCCGGTACCCACCGTGGATACTGCATGATGTGAACCATGGTTTTGAACTCTTCCTGCCCC
TCCTTTGAGAGCCCCGCCCTGCGCCCACCCGGTGCCTGCCAGACCTGGGGCTTGCAGCTGGGGG
AGGCCGGTGGGGTGAGGCAGGCAGGCAGGCAGCCAGCCCGCTGCAATGAGAAGAAGCACAGATT
GCAATGGACTCAGTTGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTTCTTTCTTTCTCCC
TTCTCAACCCTTTCCTTCCCTACCCAGCCAGGCTGGGCTGCCTCCTTCCCCCCATCGCTAGCCA
TTTTGGGGGTGGCAAGGAGGTGTGGTCGTTTCTCGTGGTTGTGTGTGTTTGTTGTTCGGGTTTT
AAAAAAGGGAAATTGAGACTGCAAGTGGGGGGAGGTGGAGGGTCTGGGGGAGTCTGCCCCCCAA
CCCAGGAGTACCCCCCTTGCCACCAAGTCTCCTTTATTGCCTGCCTCTGCTGTGAATTAACTTG
TTCTGTGTATTAAACTGGGCCGGACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_017589599 ⟹ XP_017445088

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	87,248,747 - 87,258,070 (+)	NCBI

Sequence:

show sequence

GGGTGTCTGGCAAGAATGGTGTACGACGCGTTGCTCCTGGACGGGTGGAGGGCGTGGGGGAGGG
GTCTCCAAGGATTTTTAGGGGAAAGGGGTCATGTCCCCTCCCAGGGATGCTAGGGTTTGAGAGA
GGGTAAATGATTTAGAGAAGATGGGGCCTGGGTACACTCGAGTCGAACCCACGCTACCTTTGTC
TTGGGGTGTGGAGTGTGTTGTGAGACTTATACATTGCTTTTTGTTTTGTAGCTGAATGTGTGGG
TATGTATAGGATTTCTTTTATTCTGCACTACCTATCTGAGTATTTGGGTCTCTAAGTGTGTGCA
CATGTCTGGTGAAACTGCACCATTTATGTTCCGTGTCTCTGGATAGGGAGCTGTAGGGATAGGT
CTAAATATTTGCACGAACAGAGGCAGACCGGACTGTCCCTCTGTTTCCAAGGGGTGTACCTGTG
TTTGTGAATGTATTTTAAATTTGGGTTTGTTTTTCCCCGGAGGGTGTGAATGTGTGTATGTGTA
CCTGTATAAATCTCTGTGATGTCTTTGTATTGTGTGTTTGGCTGAAGTGTCTCTGGATGAATAT
GTAAGCGCATATGTAAATGATTCTAGGGTCCCTATCTTTTGACAACGTGTGACTGTTGGGATGA
GTGTTGTGTGGTGTGTTTCCATGTTGTGGGGCTTTGTGGATAATCTTCCTCTGGACACATCTGG
GGTCTCTGGATACATGGCATTCATAGCCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACT
GCCGCAGCTACAACGCGCGCCTGTGTGCCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCTCA
GACCGGCGTGGCTCAGAACAACTGCTACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTG
GCCCCAGGACAGATCTACACTTACCCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCC
TGGAGGACCCCAGGCTCCGGCCCTGCGAGTACAAGATCGCTGTACTCAAAGGTTGGCTGTGTTC
CTTCGTGTGGCTGGCCATCTATCTGCATGTCCCGCATATGTGTCTATTGTGAGGCACCTCTGAA
GAAGGAGGGTGGCCTCCCGGAAGGGCCAGTCCTTGAGGCTCTGCTGTGCGCTGAGACTGGAGAG
AAGAAAGTGGAGTTGAAGGAGGAGGAGACCATTATGGACTGTCAGAAACAGCAGTTGCTGGAGT
TTCCGCATGATCTCGAGGTAGAAGACTTGGAGGAAGACATTCCCAGGAGGAAGAACAGGGCCAA
AGGAAAGGCGTATGGCATTGGAGGTCTCCGGAAACGCCAGGACAACGCATCCTTGGAGGACCGA
GACAAGCCGTACGTCTGTGATATCTGTGGGAAGAGGTATAAGAACCGGCCAGGGCTTAGCTACC
ACTACACCCACACCCACCTGGCTGAGGAGGAGGGGGAGGAGCACACTGAGCGCCACGCCCTGCC
TTTCCACCGGAAAAACAACCATAAACAGTTTTACAAAGAATTGGCCTGGGTCCCCGAGGCACAG
AGGAAACACACAGCCAAGAAAGCACCAGATGGCACTGTCATCCCCAATGGCTACTGTGACTTTT
GCCTGGGGGGCTCCAAGAAGACTGGATGTCCTGAGGACCTCATCTCCTGTGCGGACTGCGGGCG
ATCAGGACATCCCTCGTGTTTACAGTTCACGGTGAACATGACCGCAGCCGTGCGGACCTACCGC
TGGCAGTGTATCGAATGCAAGTCCTGCAGCCTGTGTGGCACCTCGGAGAATGACGGTGCCAGCT
GGGCGGGTCTCACCCCCCAGGACCAGCTGCTGTTCTGTGACGACTGCGATCGGGGTTACCACAT
GTACTGCCTGAGCCCTCCCATGGCGGAGCCCCCGGAAGGGAGCTGGAGTTGCCACCTCTGTCTC
CGGCACTTGAAAGAAAAGGCCTCCGCTTACATCACCCTGACTTAGACCTGGCTCTGCTTCTCCA
GGACCTTTGGGTGGTGCTATCCTCGGCCTCTTGGAGCTCCTGACTTTTCCCGCCTGGTGTCCCC
AGTGGAAGGGATAGGGTGAAGCCCAGAGAGGGGCCAAGGCGGTCTCCCTCTGCAAGTGGAATGT
TACCCTGAGGGAGGGTGGGTCCAGCAGGGTCCCTCCTGTCCCCCATCTTCATTCCTTGACAAGT
GGGCACCAGGCTTCTGCTCCCCTCAAAGCCATACCCCGCCTCTGGGCGGGCATAGAGGGGTAGT
GGATGCCAGCCAGTGGCACGGAAAAAGCCTTTTTCTAAAGAAAAAGACAAAACGTGAAAAAAAA
AAAAGGAAAAAAAAAAAGAAATTAATATATACAAAGATTCCTCTAAGCCTGGCTGGGTGGGGGG
CCACTGAGTGTCTGCTGGGACCTGACTTTACCAGTTTCCTGAATGGCCCCTCCCCACCCCATTT
CTGGAGTTGCAATTGTCTCAACTCCCATCTGAGGTGGGTACCACACCTTCCTCACAGCCAGGCC
AGGTGGGCATGGTGCCCACACACTGCCCCCTCCCGGTACCCACCGTGGATACTGCATGATGTGA
ACCATGGTTTTGAACTCTTCCTGCCCCTCCTTTGAGAGCCCCGCCCTGCGCCCACCCGGTGCCT
GCCAGACCTGGGGCTTGCAGCTGGGGGAGGCCGGTGGGGTGAGGCAGGCAGGCAGGCAGCCAGC
CCGCTGCAATGAGAAGAAGCACAGATTGCAATGGACTCAGTTGTTTTTTGTTTTTTGTTTTTGT
TTTTGTTTTTTTTTCTTTCTTTCTCCCTTCTCAACCCTTTCCTTCCCTACCCAGCCAGGCTGGG
CTGCCTCCTTCCCCCCATCGCTAGCCATTTTGGGGGTGGCAAGGAGGTGTGGTCGTTTCTCGTG
GTTGTGTGTGTTTGTTGTTCGGGTTTTAAAAAAGGGAAATTGAGACTGCAAGTGGGGGGAGGTG
GAGGGTCTGGGGGAGTCTGCCCCCCAACCCAGGAGTACCCCCCTTGCCACCAAGTCTCCTTTAT
TGCCTGCCTCTGCTGTGAATTAACTTGTTCTGTGTATTAAACTGGGCCGGACCCCTCTGCCCAC
AAC

hide sequence

RefSeq Acc Id:

XM_017589600 ⟹ XP_017445089

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	87,248,749 - 87,258,070 (+)	NCBI

Sequence:

show sequence

GTGTCTGGCAAGAATGGTGTACGACGCGTTGCTCCTGGACGGGTGGAGGGCGTGGGGGAGGGGT
CTCCAAGGATTTTTAGGGGAAAGGGGTCATGTCCCCTCCCAGGGATGCTAGGGTTTGAGAGAGG
GTAAATGATTTAGAGAAGATGGGGCCTGGGTACACTCGAGTCGAACCCACGCTACCTTTGTCTT
GGGGTGTGGAGTGTGTTGTGAGACTTATACATTGCTTTTTGTTTTGTAGCTGAATGTGTGGGTA
TGTATAGGATTTCTTTTATTCTGCACTACCTATCTGAGTATTTGGGTCTCTAAGTGTGTGCACA
TGTCTGGTGAAACTGCACCATTTATGTTCCGTGTCTCTGGATAGGGAGCTGTAGGGATAGGTCT
AAATATTTGCACGAACAGAGGCAGACCGGACTGTCCCTCTGTTTCCAAGGGGTGTACCTGTGTT
TGTGAATGTATTTTAAATTTGGGTTTGTTTTTCCCCGGAGGGTGTGAATGTGTGTATGTGTACC
TGTATAAATCTCTGTGATGTCTTTGTATTGTGTGTTTGGCTGAAGTGTCTCTGGATGAATATGT
AAGCGCATATGTAAATGATTCTAGGGTCCCTATCTTTTGACAACGTGTGACTGTTGGGATGAGT
GTTGTGTGGTGTGTTTCCATGTTGTGGGGCTTTGTGGATAATCTTCCTCTGGACACATCTGGGG
TCTCTGGATACATGGCATTCATAGCCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACTGC
CGCAGCTACAACGCGCGCCTGTGTGCCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCTCAGA
CCGGCGTGGCTCAGAACAACTGCTACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTGGC
CCCAGGACAGATCTACACTTACCCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTG
GAGGACCCCAGGCTCCGGCCCTGCGAGTACAAGATCGCTGTACTCAAAGGTTGGCTGTGTTCCT
TCGTGTGGCTGGCCATCTATCTGCATGTCCCGCATATGTGTCTATTGTGAGGCACCTCTGAAGA
AGGAGGGTGGCCTCCCGGAAGGGCCAGTCCTTGAGGCTCTGCTGTGCGCTGAGACTGGAGAGAA
GAAAGTGGAGTTGAAGGAGGAGGAGACCATTATGGACTGTCAGAAACAGCAGTTGCTGGAGTTT
CCGCATGATCTCGAGGTAGAAGACTTGGAGGAAGACATTCCCAGGAGGAAGAACAGGGCCAAAG
GAAAGGCGTATGGCATTGGAGGTCTCCGGAAACGCCAGGACAACGCATCCTTGGAGGACCGAGA
CAAGCCGTACGTCTGTGATATCTGTGGGAAGAGGTATAAGAACCGGCCAGGGCTTAGCTACCAC
TACACCCACACCCACCTGGCTGAGGAGGAGGGGGAGGAGCACACTGAGCGCCACGCCCTGCCTT
TCCACCGGAAAAACAACCATAAACAGTTTTACAAAGAATTGGCCTGGGTCCCCGAGGCACAGAG
GAAACACACAGCCAAGAAAGCACCAGATGGCACTGTCATCCCCAATGGCTACTGTGACTTTTGC
CTGGGGGGCTCCAAGAAGACTGGATGTCCTGAGGACCTCATCTCCTGTGCGGACTGCGGGCGAT
CAGGACATCCCTCGTGTTTACAGTTCACGGTGAACATGACCGCAGCCGTGCGGACCTACCGCTG
GCAGTGTATCGAATGCAAGTCCTGCAGCCTGTGTGGCACCTCGGAGAATGACGACCAGCTGCTG
TTCTGTGACGACTGCGATCGGGGTTACCACATGTACTGCCTGAGCCCTCCCATGGCGGAGCCCC
CGGAAGGGAGCTGGAGTTGCCACCTCTGTCTCCGGCACTTGAAAGAAAAGGCCTCCGCTTACAT
CACCCTGACTTAGACCTGGCTCTGCTTCTCCAGGACCTTTGGGTGGTGCTATCCTCGGCCTCTT
GGAGCTCCTGACTTTTCCCGCCTGGTGTCCCCAGTGGAAGGGATAGGGTGAAGCCCAGAGAGGG
GCCAAGGCGGTCTCCCTCTGCAAGTGGAATGTTACCCTGAGGGAGGGTGGGTCCAGCAGGGTCC
CTCCTGTCCCCCATCTTCATTCCTTGACAAGTGGGCACCAGGCTTCTGCTCCCCTCAAAGCCAT
ACCCCGCCTCTGGGCGGGCATAGAGGGGTAGTGGATGCCAGCCAGTGGCACGGAAAAAGCCTTT
TTCTAAAGAAAAAGACAAAACGTGAAAAAAAAAAAAGGAAAAAAAAAAAGAAATTAATATATAC
AAAGATTCCTCTAAGCCTGGCTGGGTGGGGGGCCACTGAGTGTCTGCTGGGACCTGACTTTACC
AGTTTCCTGAATGGCCCCTCCCCACCCCATTTCTGGAGTTGCAATTGTCTCAACTCCCATCTGA
GGTGGGTACCACACCTTCCTCACAGCCAGGCCAGGTGGGCATGGTGCCCACACACTGCCCCCTC
CCGGTACCCACCGTGGATACTGCATGATGTGAACCATGGTTTTGAACTCTTCCTGCCCCTCCTT
TGAGAGCCCCGCCCTGCGCCCACCCGGTGCCTGCCAGACCTGGGGCTTGCAGCTGGGGGAGGCC
GGTGGGGTGAGGCAGGCAGGCAGGCAGCCAGCCCGCTGCAATGAGAAGAAGCACAGATTGCAAT
GGACTCAGTTGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTTCTTTCTTTCTCCCTTCTC
AACCCTTTCCTTCCCTACCCAGCCAGGCTGGGCTGCCTCCTTCCCCCCATCGCTAGCCATTTTG
GGGGTGGCAAGGAGGTGTGGTCGTTTCTCGTGGTTGTGTGTGTTTGTTGTTCGGGTTTTAAAAA
AGGGAAATTGAGACTGCAAGTGGGGGGAGGTGGAGGGTCTGGGGGAGTCTGCCCCCCAACCCAG
GAGTACCCCCCTTGCCACCAAGTCTCCTTTATTGCCTGCCTCTGCTGTGAATTAACTTGTTCTG
TGTATTAAACTGGGCCGGACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_017589601 ⟹ XP_017445090

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	87,248,746 - 87,258,070 (+)	NCBI

Sequence:

show sequence

TGGGTGTCTGGCAAGAATGGTGTACGACGCGTTGCTCCTGGACGGGTGGAGGGCGTGGGGGAGG
GGTCTCCAAGGATTTTTAGGGGAAAGGGGTCATGTCCCCTCCCAGGGATGCTAGGGTTTGAGAG
AGGGTAAATGATTTAGAGAAGATGGGGCCTGGGTACACTCGAGTCGAACCCACGCTACCTTTGT
CTTGGGGTGTGGAGTGTGTTGTGAGACTTATACATTGCTTTTTGTTTTGTAGCTGAATGTGTGG
GTATGTATAGGATTTCTTTTATTCTGCACTACCTATCTGAGTATTTGGGTCTCTAAGTGTGTGC
ACATGTCTGGTGAAACTGCACCATTTATGTTCCGTGTCTCTGGATAGGGAGCTGTAGGGATAGG
TCTAAATATTTGCACGAACAGAGGCAGACCGGACTGTCCCTCTGTTTCCAAGGGGTGTACCTGT
GTTTGTGAATGTATTTTAAATTTGGGTTTGTTTTTCCCCGGAGGGTGTGAATGTGTGTATGTGT
ACCTGTATAAATCTCTGTGATGTCTTTGTATTGTGTGTTTGGCTGAAGTGTCTCTGGATGAATA
TGTAAGCGCATATGTAAATGATTCTAGGGTCCCTATCTTTTGACAACGTGTGACTGTTGGGATG
AGTGTTGTGTGGTGTGTTTCCATGTTGTGGGGCTTTGTGGATAATCTTCCTCTGGACACATCTG
GGGTCTCTGGATACATGGCATTCATAGCCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCAC
TGCCGCAGCTACAACGCGCGCCTGTGTGCCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCTC
AGACCGGCGTGGCTCAGAACAACTGCTACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTT
GGCCCCAGGACAGATCTACACTTACCCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATC
CTGGAGGACCCCAGGCTCCGGCCCTGCGAGTACAAGATCGCTGTACTCAAAGGTTGGCTGTGTT
CCTTCGTGTGGCTGGCCATCTATCTGCATGTCCCGCATATGTGTCTATTGTGAGGCACCTCTGA
AGAAGGAGGGTGGCCTCCCGGAAGGGCCAGTCCTTGAGGCTCTGCTGTGCGCTGAGACTGGAGA
GAAGAAAGTGGAGTTGAAGGAGGAGGAGACCATTATGGACTGTCAGAAACAGCAGTTGCTGGAG
TTTCCGCATGATCTCGAGGTAGAAGACTTGGAGGAAGACATTCCCAGGAGGAAGAACAGGGCCA
AAGGAAAGGCGTATGGCATTGGAGGTCTCCGGAAACGCCAGGACAACGCATCCTTGGAGGACCG
AGACAAGCCGTACGTCTGTGATATCTGTGGGAAGAGGTATAAGAACCGGCCAGGGCTTAGCTAC
CACTACACCCACACCCACCTGGCTGAGGAGGAGGGGGAGGAGCACACTGAGCGCCACGCCCTGC
CTTTCCACCGGAAAAACAACCATAAACCCAAGAAAGCACCAGATGGCACTGTCATCCCCAATGG
CTACTGTGACTTTTGCCTGGGGGGCTCCAAGAAGACTGGATGTCCTGAGGACCTCATCTCCTGT
GCGGACTGCGGGCGATCAGGACATCCCTCGTGTTTACAGTTCACGGTGAACATGACCGCAGCCG
TGCGGACCTACCGCTGGCAGTGTATCGAATGCAAGTCCTGCAGCCTGTGTGGCACCTCGGAGAA
TGACGGTGCCAGCTGGGCGGGTCTCACCCCCCAGGACCAGCTGCTGTTCTGTGACGACTGCGAT
CGGGGTTACCACATGTACTGCCTGAGCCCTCCCATGGCGGAGCCCCCGGAAGGGAGCTGGAGTT
GCCACCTCTGTCTCCGGCACTTGAAAGAAAAGGCCTCCGCTTACATCACCCTGACTTAGACCTG
GCTCTGCTTCTCCAGGACCTTTGGGTGGTGCTATCCTCGGCCTCTTGGAGCTCCTGACTTTTCC
CGCCTGGTGTCCCCAGTGGAAGGGATAGGGTGAAGCCCAGAGAGGGGCCAAGGCGGTCTCCCTC
TGCAAGTGGAATGTTACCCTGAGGGAGGGTGGGTCCAGCAGGGTCCCTCCTGTCCCCCATCTTC
ATTCCTTGACAAGTGGGCACCAGGCTTCTGCTCCCCTCAAAGCCATACCCCGCCTCTGGGCGGG
CATAGAGGGGTAGTGGATGCCAGCCAGTGGCACGGAAAAAGCCTTTTTCTAAAGAAAAAGACAA
AACGTGAAAAAAAAAAAAGGAAAAAAAAAAAGAAATTAATATATACAAAGATTCCTCTAAGCCT
GGCTGGGTGGGGGGCCACTGAGTGTCTGCTGGGACCTGACTTTACCAGTTTCCTGAATGGCCCC
TCCCCACCCCATTTCTGGAGTTGCAATTGTCTCAACTCCCATCTGAGGTGGGTACCACACCTTC
CTCACAGCCAGGCCAGGTGGGCATGGTGCCCACACACTGCCCCCTCCCGGTACCCACCGTGGAT
ACTGCATGATGTGAACCATGGTTTTGAACTCTTCCTGCCCCTCCTTTGAGAGCCCCGCCCTGCG
CCCACCCGGTGCCTGCCAGACCTGGGGCTTGCAGCTGGGGGAGGCCGGTGGGGTGAGGCAGGCA
GGCAGGCAGCCAGCCCGCTGCAATGAGAAGAAGCACAGATTGCAATGGACTCAGTTGTTTTTTG
TTTTTTGTTTTTGTTTTTGTTTTTTTTTCTTTCTTTCTCCCTTCTCAACCCTTTCCTTCCCTAC
CCAGCCAGGCTGGGCTGCCTCCTTCCCCCCATCGCTAGCCATTTTGGGGGTGGCAAGGAGGTGT
GGTCGTTTCTCGTGGTTGTGTGTGTTTGTTGTTCGGGTTTTAAAAAAGGGAAATTGAGACTGCA
AGTGGGGGGAGGTGGAGGGTCTGGGGGAGTCTGCCCCCCAACCCAGGAGTACCCCCCTTGCCAC
CAAGTCTCCTTTATTGCCTGCCTCTGCTGTGAATTAACTTGTTCTGTGTATTAAACTGGGCCGG
ACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_017589603 ⟹ XP_017445092

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	87,248,748 - 87,258,070 (+)	NCBI

Sequence:

show sequence

GGTGTCTGGCAAGAATGGTGTACGACGCGTTGCTCCTGGACGGGTGGAGGGCGTGGGGGAGGGG
TCTCCAAGGATTTTTAGGGGAAAGGGGTCATGTCCCCTCCCAGGGATGCTAGGGTTTGAGAGAG
GGTAAATGATTTAGAGAAGATGGGGCCTGGGTACACTCGAGTCGAACCCACGCTACCTTTGTCT
TGGGGTGTGGAGTGTGTTGTGAGACTTATACATTGCTTTTTGTTTTGTAGCTGAATGTGTGGGT
ATGTATAGGATTTCTTTTATTCTGCACTACCTATCTGAGTATTTGGGTCTCTAAGTGTGTGCAC
ATGTCTGGTGAAACTGCACCATTTATGTTCCGTGTCTCTGGATAGGGAGCTGTAGGGATAGGTC
TAAATATTTGCACGAACAGAGGCAGACCGGACTGTCCCTCTGTTTCCAAGGGGTGTACCTGTGT
TTGTGAATGTATTTTAAATTTGGGTTTGTTTTTCCCCGGAGGGTGTGAATGTGTGTATGTGTAC
CTGTATAAATCTCTGTGATGTCTTTGTATTGTGTGTTTGGCTGAAGTGTCTCTGGATGAATATG
TAAGCGCATATGTAAATGATTCTAGGGTCCCTATCTTTTGACAACGTGTGACTGTTGGGATGAG
TGTTGTGTGGTGTGTTTCCATGTTGTGGGGCTTTGTGGATAATCTTCCTCTGGACACATCTGGG
GTCTCTGGATACATGGCATTCATAGCCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACTG
CCGCAGCTACAACGCGCGCCTGTGTGCCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCTCAG
ACCGGCGTGGCTCAGAACAACTGCTACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTGG
CCCCAGGACAGATCTACACTTACCCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCT
GGAGGACCCCAGGCTCCGGCCCTGCGAGTACAAGATCGCTGTACTCAAAGGTTGGCTGTGTTCC
TTCGTGTGGCTGGCCATCTATCTGCATGTCCCGCATATGTGTCTATTGTGAGGCACCTCTGAAG
AAGGAGGGTGGCCTCCCGGAAGGGCCAGTCCTTGAGGCTCTGCTGTGCGCTGAGACTGGAGAGA
AGAAAGTGGAGTTGAAGGAGGAGGAGACCATTATGGACTGTCAGAAACAGCAGTTGCTGGAGTT
TCCGCATGATCTCGAGGTAGAAGACTTGGAGGAAGACATTCCCAGGAGGAAGAACAGGGCCAAA
GGAAAGGCGTATGGCATTGGAGGTCTCCGGAAACGCCAGGACAACGCATCCTTGGAGGACCGAG
ACAAGCCGTACGTCTGTGATATCTGTGGGAAGAGGTATAAGAACCGGCCAGGGCTTAGCTACCA
CTACACCCACACCCACCTGGCTGAGGAGGAGGGGGAGGAGCACACTGAGCGCCACGCCCTGCCT
TTCCACCGGAAAAACAACCATAAACCCAAGAAAGCACCAGATGGCACTGTCATCCCCAATGGCT
ACTGTGACTTTTGCCTGGGGGGCTCCAAGAAGACTGGATGTCCTGAGGACCTCATCTCCTGTGC
GGACTGCGGGCGATCAGGACATCCCTCGTGTTTACAGTTCACGGTGAACATGACCGCAGCCGTG
CGGACCTACCGCTGGCAGTGTATCGAATGCAAGTCCTGCAGCCTGTGTGGCACCTCGGAGAATG
ACGACCAGCTGCTGTTCTGTGACGACTGCGATCGGGGTTACCACATGTACTGCCTGAGCCCTCC
CATGGCGGAGCCCCCGGAAGGGAGCTGGAGTTGCCACCTCTGTCTCCGGCACTTGAAAGAAAAG
GCCTCCGCTTACATCACCCTGACTTAGACCTGGCTCTGCTTCTCCAGGACCTTTGGGTGGTGCT
ATCCTCGGCCTCTTGGAGCTCCTGACTTTTCCCGCCTGGTGTCCCCAGTGGAAGGGATAGGGTG
AAGCCCAGAGAGGGGCCAAGGCGGTCTCCCTCTGCAAGTGGAATGTTACCCTGAGGGAGGGTGG
GTCCAGCAGGGTCCCTCCTGTCCCCCATCTTCATTCCTTGACAAGTGGGCACCAGGCTTCTGCT
CCCCTCAAAGCCATACCCCGCCTCTGGGCGGGCATAGAGGGGTAGTGGATGCCAGCCAGTGGCA
CGGAAAAAGCCTTTTTCTAAAGAAAAAGACAAAACGTGAAAAAAAAAAAAGGAAAAAAAAAAAG
AAATTAATATATACAAAGATTCCTCTAAGCCTGGCTGGGTGGGGGGCCACTGAGTGTCTGCTGG
GACCTGACTTTACCAGTTTCCTGAATGGCCCCTCCCCACCCCATTTCTGGAGTTGCAATTGTCT
CAACTCCCATCTGAGGTGGGTACCACACCTTCCTCACAGCCAGGCCAGGTGGGCATGGTGCCCA
CACACTGCCCCCTCCCGGTACCCACCGTGGATACTGCATGATGTGAACCATGGTTTTGAACTCT
TCCTGCCCCTCCTTTGAGAGCCCCGCCCTGCGCCCACCCGGTGCCTGCCAGACCTGGGGCTTGC
AGCTGGGGGAGGCCGGTGGGGTGAGGCAGGCAGGCAGGCAGCCAGCCCGCTGCAATGAGAAGAA
GCACAGATTGCAATGGACTCAGTTGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTTCTTT
CTTTCTCCCTTCTCAACCCTTTCCTTCCCTACCCAGCCAGGCTGGGCTGCCTCCTTCCCCCCAT
CGCTAGCCATTTTGGGGGTGGCAAGGAGGTGTGGTCGTTTCTCGTGGTTGTGTGTGTTTGTTGT
TCGGGTTTTAAAAAAGGGAAATTGAGACTGCAAGTGGGGGGAGGTGGAGGGTCTGGGGGAGTCT
GCCCCCCAACCCAGGAGTACCCCCCTTGCCACCAAGTCTCCTTTATTGCCTGCCTCTGCTGTGA
ATTAACTTGTTCTGTGTATTAAACTGGGCCGGACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_017589604 ⟹ XP_017445093

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	87,248,745 - 87,258,070 (+)	NCBI

Sequence:

show sequence

GTGGGTGTCTGGCAAGAATGGTGTACGACGCGTTGCTCCTGGACGGGTGGAGGGCGTGGGGGAG
GGGTCTCCAAGGATTTTTAGGGGAAAGGGGTCATGTCCCCTCCCAGGGATGCTAGGGTTTGAGA
GAGGGTAAATGATTTAGAGAAGATGGGGCCTGGGTACACTCGAGTCGAACCCACGCTACCTTTG
TCTTGGGGTGTGGAGTGTGTTGTGAGACTTATACATTGCTTTTTGTTTTGTAGCTGAATGTGTG
GGTATGTATAGGATTTCTTTTATTCTGCACTACCTATCTGAGTATTTGGGTCTCTAAGTGTGTG
CACATGTCTGGTGAAACTGCACCATTTATGTTCCGTGTCTCTGGATAGGGAGCTGTAGGGATAG
GTCTAAATATTTGCACGAACAGAGGCAGACCGGACTGTCCCTCTGTTTCCAAGGGGTGTACCTG
TGTTTGTGAATGTATTTTAAATTTGGGTTTGTTTTTCCCCGGAGGGTGTGAATGTGTGTATGTG
TACCTGTATAAATCTCTGTGATGTCTTTGTATTGTGTGTTTGGCTGAAGTGTCTCTGGATGAAT
ATGTAAGCGCATATGTAAATGATTCTAGGGTCCCTATCTTTTGACAACGTGTGACTGTTGGGAT
GAGTGTTGTGTGGTGTGTTTCCATGTTGTGGGGCTTTGTGGATAATCTTCCTCTGGACACATCT
GGGGTCTCTGGATACATGGCATTCATAGCCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCA
CTGCCGCAGCTACAACGCGCGCCTGTGTGCCGAGCGCAGCCTGCGCCTGCCCTTCCTCGACTCT
CAGACCGGCGTGGCTCAGAACAACTGCTACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTT
TGGCCCCAGGACAGATCTACACTTACCCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACAT
CCTGGAGGACCCCAGGCTCCGGCCCTGCGAGTACAAGATCGCTGTACTCAAAGGTTGGCTGTGT
TCCTTCGTGTGGCTGGCCATCTATCTGCATGTCCCGCATATGTGTCTATTGTGAGGCACCTCTG
AAGAAGGAGGGTGGCCTCCCGGAAGGGCCAGTCCTTGAGGCTCTGCTGTGCGCTGAGACTGGAG
AGAAGAAAGTGGAGTTGAAGGAGGAGGAGACCATTATGGACTGTCAGGCGTATGGCATTGGAGG
TCTCCGGAAACGCCAGGACAACGCATCCTTGGAGGACCGAGACAAGCCGTACGTCTGTGATATC
TGTGGGAAGAGGTATAAGAACCGGCCAGGGCTTAGCTACCACTACACCCACACCCACCTGGCTG
AGGAGGAGGGGGAGGAGCACACTGAGCGCCACGCCCTGCCTTTCCACCGGAAAAACAACCATAA
ACAGTTTTACAAAGAATTGGCCTGGGTCCCCGAGGCACAGAGGAAACACACAGCCAAGAAAGCA
CCAGATGGCACTGTCATCCCCAATGGCTACTGTGACTTTTGCCTGGGGGGCTCCAAGAAGACTG
GATGTCCTGAGGACCTCATCTCCTGTGCGGACTGCGGGCGATCAGGACATCCCTCGTGTTTACA
GTTCACGGTGAACATGACCGCAGCCGTGCGGACCTACCGCTGGCAGTGTATCGAATGCAAGTCC
TGCAGCCTGTGTGGCACCTCGGAGAATGACGGTGCCAGCTGGGCGGGTCTCACCCCCCAGGACC
AGCTGCTGTTCTGTGACGACTGCGATCGGGGTTACCACATGTACTGCCTGAGCCCTCCCATGGC
GGAGCCCCCGGAAGGGAGCTGGAGTTGCCACCTCTGTCTCCGGCACTTGAAAGAAAAGGCCTCC
GCTTACATCACCCTGACTTAGACCTGGCTCTGCTTCTCCAGGACCTTTGGGTGGTGCTATCCTC
GGCCTCTTGGAGCTCCTGACTTTTCCCGCCTGGTGTCCCCAGTGGAAGGGATAGGGTGAAGCCC
AGAGAGGGGCCAAGGCGGTCTCCCTCTGCAAGTGGAATGTTACCCTGAGGGAGGGTGGGTCCAG
CAGGGTCCCTCCTGTCCCCCATCTTCATTCCTTGACAAGTGGGCACCAGGCTTCTGCTCCCCTC
AAAGCCATACCCCGCCTCTGGGCGGGCATAGAGGGGTAGTGGATGCCAGCCAGTGGCACGGAAA
AAGCCTTTTTCTAAAGAAAAAGACAAAACGTGAAAAAAAAAAAAGGAAAAAAAAAAAGAAATTA
ATATATACAAAGATTCCTCTAAGCCTGGCTGGGTGGGGGGCCACTGAGTGTCTGCTGGGACCTG
ACTTTACCAGTTTCCTGAATGGCCCCTCCCCACCCCATTTCTGGAGTTGCAATTGTCTCAACTC
CCATCTGAGGTGGGTACCACACCTTCCTCACAGCCAGGCCAGGTGGGCATGGTGCCCACACACT
GCCCCCTCCCGGTACCCACCGTGGATACTGCATGATGTGAACCATGGTTTTGAACTCTTCCTGC
CCCTCCTTTGAGAGCCCCGCCCTGCGCCCACCCGGTGCCTGCCAGACCTGGGGCTTGCAGCTGG
GGGAGGCCGGTGGGGTGAGGCAGGCAGGCAGGCAGCCAGCCCGCTGCAATGAGAAGAAGCACAG
ATTGCAATGGACTCAGTTGTTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTTTTTCTTTCTTTCT
CCCTTCTCAACCCTTTCCTTCCCTACCCAGCCAGGCTGGGCTGCCTCCTTCCCCCCATCGCTAG
CCATTTTGGGGGTGGCAAGGAGGTGTGGTCGTTTCTCGTGGTTGTGTGTGTTTGTTGTTCGGGT
TTTAAAAAAGGGAAATTGAGACTGCAAGTGGGGGGAGGTGGAGGGTCTGGGGGAGTCTGCCCCC
CAACCCAGGAGTACCCCCCTTGCCACCAAGTCTCCTTTATTGCCTGCCTCTGCTGTGAATTAAC
TTGTTCTGTGTATTAAACTGGGCCGGACCCCTCTGCCCACAAC

hide sequence

RefSeq Acc Id:

XM_039088375 ⟹ XP_038944303

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088377 ⟹ XP_038944305

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088383 ⟹ XP_038944311

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,605,643 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088390 ⟹ XP_038944318

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,605,645 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088394 ⟹ XP_038944322

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088397 ⟹ XP_038944325

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088402 ⟹ XP_038944330

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088407 ⟹ XP_038944335

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,602,213 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088416 ⟹ XP_038944344

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,606,677 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088421 ⟹ XP_038944349

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088425 ⟹ XP_038944353

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,602,212 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088431 ⟹ XP_038944359

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,606,658 - 84,615,954 (+)	NCBI

RefSeq Acc Id:

XM_039088436 ⟹ XP_038944364

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	84,607,361 - 84,615,954 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099199	(Get FASTA)	NCBI Sequence Viewer
	XP_006228740	(Get FASTA)	NCBI Sequence Viewer
	XP_006228747	(Get FASTA)	NCBI Sequence Viewer
	XP_038944303	(Get FASTA)	NCBI Sequence Viewer
	XP_038944305	(Get FASTA)	NCBI Sequence Viewer
	XP_038944311	(Get FASTA)	NCBI Sequence Viewer
	XP_038944318	(Get FASTA)	NCBI Sequence Viewer
	XP_038944322	(Get FASTA)	NCBI Sequence Viewer
	XP_038944325	(Get FASTA)	NCBI Sequence Viewer
	XP_038944330	(Get FASTA)	NCBI Sequence Viewer
	XP_038944335	(Get FASTA)	NCBI Sequence Viewer
	XP_038944344	(Get FASTA)	NCBI Sequence Viewer
	XP_038944349	(Get FASTA)	NCBI Sequence Viewer
	XP_038944353	(Get FASTA)	NCBI Sequence Viewer
	XP_038944359	(Get FASTA)	NCBI Sequence Viewer
	XP_038944364	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI59416	(Get FASTA)	NCBI Sequence Viewer
	EDM07826	(Get FASTA)	NCBI Sequence Viewer
	EDM07827	(Get FASTA)	NCBI Sequence Viewer
	EDM07828	(Get FASTA)	NCBI Sequence Viewer
	P56163	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001099199 ⟸ NM_001105729

- UniProtKB:

B0K016 (UniProtKB/TrEMBL), A0A0H2UHS4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPG
LAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEAPLKKEGGLPEGPVLEALLCAETGEK
KVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDNASLEDRD
KPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQR
KHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRW
QCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYI
TLT

hide sequence

RefSeq Acc Id:

XP_006228746 ⟸ XM_006228684

- Peptide Label:

isoform X8

- Sequence:

show sequence

MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPSPLRCLGEDFYREAIEHCRSYNARLCAERSL
RLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKID
CEAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQAYGIGGLRKRQDNASLEDRDKP
YVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKPKKAPDGTVIPNGYCD
FCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGA
SWAGLTPQDQLLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT

hide sequence

RefSeq Acc Id:

XP_006228739 ⟸ XM_006228677

- Peptide Label:

isoform X10

- Sequence:

show sequence

MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPSPLRCLGEDFYREAIEHCRSYNARLCAERSL
RLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKID
CEAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPR
RKNRAKGKAYGIGGLRKRQDNASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHT
ERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLIS
CADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDC
DRGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT

hide sequence

RefSeq Acc Id:

XP_006228740 ⟸ XM_006228678

- Peptide Label:

isoform X9

- Sequence:

show sequence

MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPSPLSLGEDFYREAIEHCRSYNARLCAERSLR
LPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDC
EAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRR
KNRAKGKAYGIGGLRKRQDNASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTE
RHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISC
ADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCD
RGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT

hide sequence

RefSeq Acc Id:

XP_006228741 ⟸ XM_006228679

- Peptide Label:

isoform X5

- Sequence:

show sequence

MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPSPLRCLGEDFYREAIEHCRSYNARLCAERSL
RLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKID
CEAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPR
RKNRAKGKAYGIGGLRKRQDNASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHT
ERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLIS
CADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLS
PPMAEPPEGSWSCHLCLRHLKEKASAYITLT

hide sequence

RefSeq Acc Id:

XP_006228743 ⟸ XM_006228681

- Peptide Label:

isoform X11

- Sequence:

show sequence

MGGLSARPTAGRTDPAGTCWGQDPGSKMATVIPSPLRCLGEDFYREAIEHCRSYNARLCAERSL
RLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKID
CEAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPR
RKNRAKGKAYGIGGLRKRQDNASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHT
ERHALPFHRKNNHKPKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTV
NMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCL
RHLKEKASAYITLT

hide sequence

RefSeq Acc Id:

XP_006228747 ⟸ XM_006228685

- Peptide Label:

isoform X14

- Sequence:

show sequence

MEKTHRGPGLAPGQIYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEAPLKKEGGLPEGPVLEA
LLCAETGEKKVELKEEETIMDCQKQQLLEFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQ
DNASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKE
LAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNM
TAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCDRGYHMYCLSPPMAEPPEG
SWSCHLCLRHLKEKASAYITLT

hide sequence

RefSeq Acc Id:

XP_017445093 ⟸ XM_017589604

- Peptide Label:

isoform X7

- Sequence:

show sequence

MSVVWCVSMLWGFVDNLPLDTSGVSGYMAFIALARTSTGRPSSTAAATTRACVPSAACACPSST
LRPAWLRTTATSGWRRPTAGLVWPQDRSTLTPPAVGGRNGDSTSWRTPGSGPASTRSLYSKVGC
VPSCGWPSICMSRICVYCEAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQAYGIG
GLRKRQDNASLEDRDKPYVCDICGKRYKNRPGLSYHYTHTHLAEEEGEEHTERHALPFHRKNNH
KQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLISCADCGRSGHPSCL
QFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDCDRGYHMYCLSPPM
AEPPEGSWSCHLCLRHLKEKASAYITLT

hide sequence

RefSeq Acc Id:

XP_017445090 ⟸ XM_017589601

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSVVWCVSMLWGFVDNLPLDTSGVSGYMAFIALARTSTGRPSSTAAATTRACVPSAACACPSST
LRPAWLRTTATSGWRRPTAGLVWPQDRSTLTPPAVGGRNGDSTSWRTPGSGPASTRSLYSKVGC
VPSCGWPSICMSRICVYCEAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLL
EFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDNASLEDRDKPYVCDICGKRYKNRPGLS
YHYTHTHLAEEEGEEHTERHALPFHRKNNHKPKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLIS
CADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGASWAGLTPQDQLLFCDDC
DRGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT

hide sequence

RefSeq Acc Id:

XP_017445088 ⟸ XM_017589599

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSVVWCVSMLWGFVDNLPLDTSGVSGYMAFIALARTSTGRPSSTAAATTRACVPSAACACPSST
LRPAWLRTTATSGWRRPTAGLVWPQDRSTLTPPAVGGRNGDSTSWRTPGSGPASTRSLYSKVGC
VPSCGWPSICMSRICVYCEAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLL
EFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDNASLEDRDKPYVCDICGKRYKNRPGLS
YHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCD
FCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDGA
SWAGLTPQDQLLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT

hide sequence

RefSeq Acc Id:

XP_017445092 ⟸ XM_017589603

- Peptide Label:

isoform X6

- Sequence:

show sequence

MSVVWCVSMLWGFVDNLPLDTSGVSGYMAFIALARTSTGRPSSTAAATTRACVPSAACACPSST
LRPAWLRTTATSGWRRPTAGLVWPQDRSTLTPPAVGGRNGDSTSWRTPGSGPASTRSLYSKVGC
VPSCGWPSICMSRICVYCEAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLL
EFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDNASLEDRDKPYVCDICGKRYKNRPGLS
YHYTHTHLAEEEGEEHTERHALPFHRKNNHKPKKAPDGTVIPNGYCDFCLGGSKKTGCPEDLIS
CADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRGYHMYCLS
PPMAEPPEGSWSCHLCLRHLKEKASAYITLT

hide sequence

RefSeq Acc Id:

XP_017445089 ⟸ XM_017589600

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSVVWCVSMLWGFVDNLPLDTSGVSGYMAFIALARTSTGRPSSTAAATTRACVPSAACACPSST
LRPAWLRTTATSGWRRPTAGLVWPQDRSTLTPPAVGGRNGDSTSWRTPGSGPASTRSLYSKVGC
VPSCGWPSICMSRICVYCEAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIMDCQKQQLL
EFPHDLEVEDLEEDIPRRKNRAKGKAYGIGGLRKRQDNASLEDRDKPYVCDICGKRYKNRPGLS
YHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCD
FCLGGSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQ
LLFCDDCDRGYHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT

hide sequence

RefSeq Acc Id:

ENSRNOP00000028091 ⟸ ENSRNOT00000028091

RefSeq Acc Id:	XP_038944303 ⟸ XM_039088375
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038944305 ⟸ XM_039088377
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038944322 ⟸ XM_039088394
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038944330 ⟸ XM_039088402
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038944325 ⟸ XM_039088397
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038944349 ⟸ XM_039088421
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_038944353 ⟸ XM_039088425
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038944335 ⟸ XM_039088407
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038944311 ⟸ XM_039088383
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038944318 ⟸ XM_039088390
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038944359 ⟸ XM_039088431
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038944344 ⟸ XM_039088416
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038944364 ⟸ XM_039088436
- Peptide Label:	isoform X13

Protein Domains

C2H2-type PHD-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
1	88432576	88432577	G	T	snv	GK/Ox (KNAW)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
1	87253526	87253527	G	T	snv	GK/Ox (RGD)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:61868	AgrOrtholog
Ensembl Genes	ENSRNOG00000020687	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000028091	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000028091	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8368092	IMAGE-MGC_LOAD
InterPro	DPF1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Requiem/DPF_N_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_PHD-finger	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:50545	UniProtKB/TrEMBL
MGC_CLONE	MGC:188698	IMAGE-MGC_LOAD
NCBI Gene	50545	ENTREZGENE
PANTHER	PTHR10615:SF12	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Requiem_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Dpf1	PhenoGen
PROSITE	ZF_PHD_1	UniProtKB/Swiss-Prot
	ZF_PHD_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF57903	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0H2UHS4	ENTREZGENE, UniProtKB/TrEMBL
	B0K016	ENTREZGENE, UniProtKB/TrEMBL
	DPF1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Dpf1	double PHD fingers 1	Dpf1	D4, zinc and double PHD fingers family 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-11	Dpf1	D4, zinc and double PHD fingers family 1	Neud4	neuronal d4 domain family member	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Neud4	neuronal d4 domain family member			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains a nuclear localization signal, a Kruppel-type zinc-finger and a cysteine/histidine-rich motif	61670
gene_expression	transcripts are expressed in neuronal cell bodies	61670

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations