Ceacam1 (CEA cell adhesion molecule 1) - Rat Genome Database

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Gene: Ceacam1 (CEA cell adhesion molecule 1) Rattus norvegicus
Analyze
Symbol: Ceacam1
Name: CEA cell adhesion molecule 1
RGD ID: 67396
Description: Enables several functions, including bile acid transmembrane transporter activity; calmodulin binding activity; and protein homodimerization activity. Involved in several processes, including homophilic cell adhesion via plasma membrane adhesion molecules; insulin catabolic process; and regulation of signal transduction. Acts upstream of or within positive regulation of MAP kinase activity. Located in several cellular components, including adherens junction; basal plasma membrane; and lateral plasma membrane. Orthologous to several human genes including CEACAM1 (CEA cell adhesion molecule 1); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: adhesion molecule, CEA-like; adhesion molecule, CEA-like (mapped); ATP-dependent taurocolate-carrier protein; Bgp; BGPR; C-CAM 105; carcinoembryonic antigen related cell adhesion molecule 1; carcinoembryonic antigen-related cell adhesion molecule; carcinoembryonic antigen-related cell adhesion molecule 1; carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein); Ccam1; Ccam1_mapped; CD66a; CEA-related cell adhesion molecule 1; CEA-related cell adhesion molecule 1 (bone gamma-carboxyglutamic acid (Gla) protein) (osteocalcin); cell-CAM 105; ecto-ATPase; GP110; osteocalcin; pp120; pp120/ecto-ATPase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Allele / Splice: Ceacam1_v4   Ceacam1_v1   Ceacam1_v2   Ceacam1_v3  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2181,043,595 - 81,060,050 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl181,043,595 - 81,059,992 (-)Ensembl
Rnor_6.0182,327,955 - 82,344,345 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,327,955 - 82,344,345 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,589,574 - 83,605,846 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,742,540 - 80,758,943 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1180,822,590 - 80,837,016NCBI
Celera175,484,279 - 75,500,669 (-)NCBICelera
RH 3.4 Map1826.0RGD
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,4-dichloroaniline  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
7,12-dimethyltetraphene  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
Azaspiracid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
butanal  (ISO)
calciol  (ISO)
calcitriol  (ISO)
camptothecin  (ISO)
chloroprene  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
cocaine  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
daunorubicin  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (EXP)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dinophysistoxin 1  (ISO)
diuron  (ISO)
doramapimod  (EXP)
entinostat  (ISO)
erythromycin estolate  (EXP)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
flurbiprofen  (ISO)
flutamide  (EXP)
folic acid  (ISO)
folpet  (ISO)
formaldehyde  (ISO)
fumonisin B1  (ISO)
furan  (EXP)
genistein  (EXP,ISO)
glafenine  (EXP)
glucose  (ISO)
hydrazines  (ISO)
hydrogen peroxide  (ISO)
hydroquinone O-beta-D-glucopyranoside  (ISO)
ibuprofen  (ISO)
isotretinoin  (ISO)
kainic acid  (ISO)
kojic acid  (ISO)
lead diacetate  (EXP,ISO)
leflunomide  (EXP,ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
nefazodone  (EXP)
nicotine  (ISO)
nimesulide  (EXP)
nitrofen  (EXP)
O-methyleugenol  (ISO)
oxaliplatin  (EXP)
ozone  (EXP,ISO)
p-toluidine  (EXP)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
quinidine  (EXP)
resveratrol  (ISO)
rofecoxib  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
Tesaglitazar  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
theophylline  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vincristine  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)
zingerone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
bile acid and bile salt transport  (IDA)
blood vessel development  (ISO,ISS)
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules  (ISO)
calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules  (ISO)
cell adhesion  (IDA)
cell-cell adhesion via plasma-membrane adhesion molecules  (IDA)
cell-cell junction organization  (ISO)
cellular response to insulin stimulus  (IDA)
common myeloid progenitor cell proliferation  (ISO,ISS)
granulocyte colony-stimulating factor signaling pathway  (ISO,ISS)
homophilic cell adhesion via plasma membrane adhesion molecules  (IDA,ISO)
insulin catabolic process  (IMP,ISO,ISS)
insulin receptor internalization  (IDA)
negative regulation by host of viral genome replication  (ISO)
negative regulation by host of viral process  (ISO)
negative regulation of bone resorption  (ISO)
negative regulation of cytokine production  (ISO)
negative regulation of cytotoxic T cell degranulation  (ISO,ISS)
negative regulation of fatty acid biosynthetic process  (IMP)
negative regulation of granulocyte differentiation  (ISO,ISS)
negative regulation of hepatocyte proliferation  (IMP,ISO,ISS)
negative regulation of interleukin-1 production  (ISO,ISS)
negative regulation of interleukin-2 production  (ISO)
negative regulation of JNK cascade  (ISO)
negative regulation of lipid biosynthetic process  (ISO,ISS)
negative regulation of natural killer cell mediated cytotoxicity directed against tumor cell target  (ISO,ISS)
negative regulation of osteoclast differentiation  (ISO)
negative regulation of platelet aggregation  (ISO,ISS)
negative regulation of protein kinase activity  (ISO,ISS)
negative regulation of T cell mediated cytotoxicity  (ISO,ISS)
negative regulation of T cell proliferation  (ISO)
negative regulation of T cell receptor signaling pathway  (ISO,ISS)
negative regulation of vascular permeability  (ISO,ISS)
Peyer's patch development  (ISO)
positive regulation by host of viral process  (ISO)
positive regulation of activation-induced cell death of T cells  (ISO)
positive regulation of calcineurin-NFAT signaling cascade  (ISO)
positive regulation of CD4-positive, alpha-beta T cell activation  (ISO)
positive regulation of CD4-positive, alpha-beta T cell proliferation  (ISO)
positive regulation of CD8-positive, alpha-beta T cell activation  (ISO)
positive regulation of homophilic cell adhesion  (IDA)
positive regulation of immunoglobulin production  (ISO)
positive regulation of JNK cascade  (ISO)
positive regulation of MAP kinase activity  (IDA)
positive regulation of T cell proliferation  (ISO)
positive regulation of vasculogenesis  (ISO,ISS)
regulation of blood vessel remodeling  (ISO,ISS)
regulation of cell growth  (IDA)
regulation of cell migration  (ISO,ISS)
regulation of endothelial cell differentiation  (ISO,ISS)
regulation of endothelial cell migration  (ISO,ISS)
regulation of epidermal growth factor receptor signaling pathway  (IMP,ISO,ISS)
regulation of ERK1 and ERK2 cascade  (IDA)
regulation of homophilic cell adhesion  (IDA)
regulation of phosphatidylinositol 3-kinase signaling  (IDA)
regulation of sprouting angiogenesis  (ISO,ISS)
signal transduction  (IDA)
viral entry into host cell  (ISO)
wound healing, spreading of cells  (ISO,ISS)

References

References - curated
1. Abou-Rjaily GA, etal., J Clin Invest. 2004 Oct;114(7):944-52.
2. Britt DE, etal., Exp Cell Res 2004 Oct 15;300(1):134-48.
3. Budt M, etal., Biochem Biophys Res Commun 2002 Apr 5;292(3):749-55.
4. Cheung PH, etal., Biochem J 1993 Oct 15;295 ( Pt 2):427-35.
5. Cheung PH, etal., J Biol Chem. 1993 Mar 25;268(9):6139-46.
6. Cheung PH, etal., J Biol Chem. 1993 Nov 15;268(32):24303-10.
7. Choice CV, etal., J Biol Chem. 1998 Aug 28;273(35):22194-200.
8. Edlund M, etal., J Biol Chem. 1996 Jan 19;271(3):1393-9.
9. Formisano P, etal., J Biol Chem. 1995 Oct 13;270(41):24073-7.
10. Fournes B, etal., Mol Cell Biol 2003 Oct;23(20):7291-304.
11. GOA data from the GO Consortium
12. Huff LP, etal., Am J Physiol Cell Physiol. 2019 May 1;316(5):C621-C631. doi: 10.1152/ajpcell.00208.2018. Epub 2019 Feb 6.
13. Hunter I, etal., Biochem J. 1996 Dec 15;320 ( Pt 3):847-53.
14. Klaile E, etal., J Biol Chem. 2007 Sep 7;282(36):26629-40. doi: 10.1074/jbc.M701807200. Epub 2007 Jul 9.
15. Klaile E, etal., J Cell Biol. 2009 Nov 16;187(4):553-67. doi: 10.1083/jcb.200904149.
16. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
17. Lin SH and Guidotti G, J Biol Chem 1989 Aug 25;264(24):14408-14.
18. Lucka L, etal., Eur J Biochem 1995 Dec 1;234(2):527-35.
19. Muller MM, etal., J Cell Biol. 2009 Nov 16;187(4):569-81.
20. Najjar SM, etal., Biochemistry. 1995 Jul 25;34(29):9341-9.
21. Najjar SM, etal., Cell Metab. 2005 Jul;2(1):43-53.
22. Olsson H, etal., FEBS Lett. 1995 May 22;365(1):51-6.
23. Poy MN, etal., J Biol Chem. 2002 Jan 11;277(2):1076-84. Epub 2001 Nov 1.
24. Poy MN, etal., Nat Genet 2002 Mar;30(3):270-6.
25. RGD automated import pipeline for gene-chemical interactions
26. Singer BB, etal., J Immunol 2002 May 15;168(10):5139-46.
27. Sippel CJ, etal., J Biol Chem. 1994 Jul 29;269(30):19539-45.
28. Szpirer C, etal., Mamm Genome 2000 Sep;11(9):729-35
29. Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
30. Tingstrom A, etal., J Cell Sci. 1990 May;96 ( Pt 1):17-25.
31. Wikstrom K, etal., Exp Cell Res. 1996 Sep 15;227(2):360-6.
Additional References at PubMed
PMID:1633107   PMID:1637321   PMID:1648219   PMID:1719235   PMID:1831973   PMID:1985902   PMID:2141577   PMID:2164599   PMID:6327825   PMID:7478590   PMID:8018919   PMID:8380065  
PMID:8380406   PMID:8402684   PMID:8420979   PMID:8504806   PMID:8513803   PMID:8621519   PMID:8896983   PMID:9343248   PMID:10436421   PMID:10491101   PMID:11483763   PMID:12477932  
PMID:12832451   PMID:15184366   PMID:15489334   PMID:15909305   PMID:15950623   PMID:16044082   PMID:16291724   PMID:16680193   PMID:17081782   PMID:17192268   PMID:18424730   PMID:18544705  
PMID:18794798   PMID:19008452   PMID:19199708   PMID:19358828   PMID:20036346   PMID:21029969   PMID:21081647   PMID:22179047   PMID:22235309   PMID:22496641   PMID:22962327   PMID:23123061  
PMID:23533145   PMID:23696226   PMID:23800882   PMID:24743304   PMID:25363763   PMID:25490771   PMID:26483485  


Genomics

Comparative Map Data
Ceacam1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2181,043,595 - 81,060,050 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl181,043,595 - 81,059,992 (-)Ensembl
Rnor_6.0182,327,955 - 82,344,345 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,327,955 - 82,344,345 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,589,574 - 83,605,846 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,742,540 - 80,758,943 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1180,822,590 - 80,837,016NCBI
Celera175,484,279 - 75,500,669 (-)NCBICelera
RH 3.4 Map1826.0RGD
Cytogenetic Map1q21NCBI
CEACAM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1942,507,304 - 42,561,234 (-)EnsemblGRCh38hg38GRCh38
GRCh381942,507,306 - 42,528,482 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371943,011,458 - 43,032,633 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,703,298 - 47,724,479 (-)NCBINCBI36hg18NCBI36
Build 341947,703,298 - 47,724,438NCBI
Celera1939,812,240 - 39,833,442 (-)NCBI
Cytogenetic Map19q13.2NCBI
HuRef1939,441,679 - 39,462,877 (-)NCBIHuRef
CHM1_11943,013,129 - 43,034,353 (-)NCBICHM1_1
Ceacam1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39725,161,127 - 25,177,072 (-)NCBIGRCm39mm39
GRCm39 Ensembl725,161,132 - 25,177,028 (-)Ensembl
GRCm38725,461,702 - 25,477,647 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,461,707 - 25,477,603 (-)EnsemblGRCm38mm10GRCm38
MGSCv37726,246,721 - 26,262,644 (-)NCBIGRCm37mm9NCBIm37
MGSCv36725,170,462 - 25,186,385 (-)NCBImm8
Celera720,077,172 - 20,093,096 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.84NCBI
Ceacam1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955555426,894 - 446,235 (+)NCBIChiLan1.0ChiLan1.0
CEACAM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11947,987,522 - 48,008,739 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1947,989,430 - 48,008,739 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01939,395,550 - 39,417,063 (-)NCBIMhudiblu_PPA_v0panPan3
CEACAM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11111,902,429 - 111,919,191 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1111,745,413 - 111,917,830 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,327,263 - 111,342,206 (+)NCBI
ROS_Cfam_1.01112,464,630 - 112,529,985 (+)NCBI
UMICH_Zoey_3.11112,027,612 - 112,084,452 (+)NCBI
UNSW_CanFamBas_1.01111,661,182 - 111,718,360 (+)NCBI
UU_Cfam_GSD_1.01112,587,794 - 112,644,821 (+)NCBI
LOC101954488
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934915,690,137 - 15,707,040 (+)NCBI
SpeTri2.0NW_00493670637,480 - 53,306 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEACAM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1649,437,308 - 49,460,614 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,330,417 - 45,353,721 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEACAM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,708,368 - 36,731,729 (-)NCBI
Vero_WHO_p1.0NW_02366607314,956,410 - 14,978,884 (-)NCBI

Position Markers
BE097239  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,044,505 - 81,044,706 (+)MAPPERmRatBN7.2
Rnor_6.0182,328,866 - 82,329,066NCBIRnor6.0
Rnor_5.0183,590,485 - 83,590,685UniSTSRnor5.0
RGSC_v3.4180,743,451 - 80,743,651UniSTSRGSC3.4
Celera175,485,190 - 75,485,390UniSTS
RH 3.4 Map1822.9UniSTS
Cytogenetic Map1q21-q22UniSTS
RH142426  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,047,931 - 81,048,123 (+)MAPPERmRatBN7.2
Rnor_6.0182,332,292 - 82,332,483NCBIRnor6.0
Rnor_5.0183,593,911 - 83,594,102UniSTSRnor5.0
RGSC_v3.4180,746,890 - 80,747,081UniSTSRGSC3.4
Celera175,488,616 - 75,488,807UniSTS
RH 3.4 Map1826.0UniSTS
Cytogenetic Map1q21-q22UniSTS
BI274452  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,044,721 - 81,044,928 (+)MAPPERmRatBN7.2
Rnor_6.0182,329,082 - 82,329,288NCBIRnor6.0
Rnor_5.0183,590,701 - 83,590,907UniSTSRnor5.0
RGSC_v3.4180,743,667 - 80,743,873UniSTSRGSC3.4
Celera175,485,406 - 75,485,612UniSTS
RH 3.4 Map1827.1UniSTS
Cytogenetic Map1q21-q22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1198
Count of miRNA genes:283
Interacting mature miRNAs:353
Transcripts:ENSRNOT00000027933, ENSRNOT00000029487, ENSRNOT00000051892
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 25 25 5 25 2 7 4 11
Low 37 32 16 14 16 8 10 72 28 33 8
Below cutoff 6 1 4

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001033861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001033862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_031755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH003624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ277104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ277105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA333997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J04963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M92848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X71122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X91137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z12019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000027214   ⟹   ENSRNOP00000027213
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl181,053,305 - 81,059,992 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000027933   ⟹   ENSRNOP00000027933
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl181,043,595 - 81,059,986 (-)Ensembl
Rnor_6.0 Ensembl182,327,955 - 82,344,345 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000029487   ⟹   ENSRNOP00000031260
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl181,043,595 - 81,059,986 (-)Ensembl
Rnor_6.0 Ensembl182,327,955 - 82,344,345 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000051892   ⟹   ENSRNOP00000046654
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl181,043,595 - 81,059,986 (-)Ensembl
Rnor_6.0 Ensembl182,327,955 - 82,344,345 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090629   ⟹   ENSRNOP00000074820
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl181,043,595 - 81,059,986 (-)Ensembl
Rnor_6.0 Ensembl182,327,955 - 82,344,345 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103781   ⟹   ENSRNOP00000085270
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl181,045,551 - 81,059,986 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111729   ⟹   ENSRNOP00000089582
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl181,043,595 - 81,059,986 (-)Ensembl
RefSeq Acc Id: NM_001033860   ⟹   NP_001029032
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2181,043,595 - 81,059,986 (-)NCBI
Rnor_6.0182,327,955 - 82,344,345 (-)NCBI
Rnor_5.0183,589,574 - 83,605,846 (-)NCBI
RGSC_v3.4180,742,540 - 80,758,943 (-)RGD
Celera175,484,279 - 75,500,669 (-)RGD
Sequence:
RefSeq Acc Id: NM_001033861   ⟹   NP_001029033
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2181,043,595 - 81,059,986 (-)NCBI
Rnor_6.0182,327,955 - 82,344,345 (-)NCBI
Rnor_5.0183,589,574 - 83,605,846 (-)NCBI
RGSC_v3.4180,742,540 - 80,758,943 (-)RGD
Celera175,484,279 - 75,500,669 (-)RGD
Sequence:
RefSeq Acc Id: NM_001033862   ⟹   NP_001029034
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2181,043,595 - 81,059,986 (-)NCBI
Rnor_6.0182,327,955 - 82,344,345 (-)NCBI
Rnor_5.0183,589,574 - 83,605,846 (-)NCBI
RGSC_v3.4180,742,540 - 80,758,943 (-)RGD
Celera175,484,279 - 75,500,669 (-)RGD
Sequence:
RefSeq Acc Id: NM_031755   ⟹   NP_113943
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2181,043,595 - 81,059,986 (-)NCBI
Rnor_6.0182,327,955 - 82,344,345 (-)NCBI
Rnor_5.0183,589,574 - 83,605,846 (-)NCBI
RGSC_v3.4180,742,540 - 80,758,943 (-)RGD
Celera175,484,279 - 75,500,669 (-)RGD
Sequence:
RefSeq Acc Id: XM_039091997   ⟹   XP_038947925
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2181,043,595 - 81,058,204 (-)NCBI
RefSeq Acc Id: XM_039092002   ⟹   XP_038947930
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2181,058,098 - 81,060,050 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001029032   ⟸   NM_001033860
- Peptide Label: isoform 1 precursor
- UniProtKB: P16573 (UniProtKB/Swiss-Prot),   A0A0G2JSW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029033   ⟸   NM_001033861
- Peptide Label: isoform 2 precursor
- UniProtKB: P16573 (UniProtKB/Swiss-Prot),   Q9JHL6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029034   ⟸   NM_001033862
- Peptide Label: isoform 3 precursor
- UniProtKB: P16573 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_113943   ⟸   NM_031755
- Peptide Label: isoform 4 precursor
- UniProtKB: P16573 (UniProtKB/Swiss-Prot),   Q9JHL7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000046654   ⟸   ENSRNOT00000051892
RefSeq Acc Id: ENSRNOP00000074820   ⟸   ENSRNOT00000090629
RefSeq Acc Id: ENSRNOP00000031260   ⟸   ENSRNOT00000029487
RefSeq Acc Id: ENSRNOP00000027933   ⟸   ENSRNOT00000027933
RefSeq Acc Id: XP_038947925   ⟸   XM_039091997
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038947930   ⟸   XM_039092002
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000027213   ⟸   ENSRNOT00000027214
RefSeq Acc Id: ENSRNOP00000089582   ⟸   ENSRNOT00000111729
RefSeq Acc Id: ENSRNOP00000085270   ⟸   ENSRNOT00000103781
Protein Domains
Ig-like   Ig-like C2-type   Ig-like V-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689817
Promoter ID:EPDNEW_R342
Type:multiple initiation site
Name:Ceacam1_1
Description:carcinoembryonic antigen related cell adhesion molecule 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0182,344,358 - 82,344,418EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:67396 AgrOrtholog
Ensembl Genes ENSRNOG00000020578 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000027933 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000031260 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000046654 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000074820 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000027933 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000029487 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000051892 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000090629 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5599117 IMAGE-MGC_LOAD
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:81613 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72387 IMAGE-MGC_LOAD
NCBI Gene 81613 ENTREZGENE
Pfam Ig_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00047 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ceacam1 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC205360
  TC205361
UniProt A0A0G2JSW2 ENTREZGENE
  CEAM1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q9JHL6 ENTREZGENE, UniProtKB/TrEMBL
  Q9JHL7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q63093 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-03 Ceacam1  CEA cell adhesion molecule 1  Ceacam1  carcinoembryonic antigen related cell adhesion molecule 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-01-20 Ceacam1  carcinoembryonic antigen related cell adhesion molecule 1  Ceacam1  carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Ceacam1  carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)  Ceacam1  CEA-related cell adhesion molecule 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-04-23 Ceacam1  CEA-related cell adhesion molecule 1  Ccam1_mapped  adhesion molecule, CEA-like (mapped)  Data Merged 737654 APPROVED
2005-11-17 Ccam1_mapped  adhesion molecule, CEA-like (mapped)  Ccam1  adhesion molecule, CEA-like  Symbol and Name updated 1556543 APPROVED
2004-09-10 Ceacam1  CEA-related cell adhesion molecule 1    carcinoembryonic antigen-related cell adhesion molecule 1  Name updated 1299863 APPROVED
2002-06-10 Ceacam1  carcinoembryonic antigen-related cell adhesion molecule 1      Symbol and Name status set to approved 70586 APPROVED
2002-06-10 Ccam1  adhesion molecule, CEA-like      Symbol and Name status set to provisional 70585 PROVISIONAL
2001-10-22 Ceacam1  carcinoembryonic antigen-related cell adhesion molecule      Name updated 68916 PENDING

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized to cell-cell contacts, but requires activated Cdc42 and Rac1 for localization 1299145
gene_expression expressed in liver 625473
gene_expression expressed on epithelia, endothelia, lymphocytes, granulocytes and platelets 625473
gene_process receptor for various pathogens such as Neisseria and Haemophilus 625473
gene_process acts as a tumor suppressor and plays a role in angiogenesis and cellular polarization 625473
gene_process homophilic cell adhesion molecule 625473
gene_process plays a role in cell proliferation, tumor growth, apoptosis, angiogenesis, T cell cytotoxicity, dendritic cell function, granulocyte activation and epithelial cell polarization; also may function as a microbial receptor 625644
gene_product transmembrane glycoprotein 625644
gene_transcript contains two differential splicing products- Ceacam1_v1 (Ceacam1-L) and Ceacam1_v2 (Ceacam1-S) that have the identical four extracellular Ig domains but differ in their cytoplasmic domain 625644