Rpl18 (ribosomal protein L18) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rpl18 (ribosomal protein L18) Rattus norvegicus
Analyze
Symbol: Rpl18
Name: ribosomal protein L18
RGD ID: 621182
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in liver regeneration. Part of cytosolic large ribosomal subunit. Is active in synapse. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 18. Orthologous to human RPL18 (ribosomal protein L18); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 60S ribosomal protein L18
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2196,188,811 - 96,191,452 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl196,188,112 - 96,191,452 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,574,246 - 101,576,887 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01110,046,944 - 110,049,585 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01103,337,321 - 103,339,962 (+)NCBIRnor_WKY
Rnor_6.01101,700,910 - 101,703,551 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,701,975 - 101,703,550 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,779,742 - 102,782,383 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,186,553 - 96,189,194 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1196,265,737 - 96,267,304 (+)NCBI
Celera190,442,010 - 90,444,651 (+)NCBICelera
Cytogenetic Map1q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
acrolein  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
caffeine  (ISO)
cannabidiol  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
clobetasol  (ISO)
clofibric acid  (EXP)
cylindrospermopsin  (ISO)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dihydroartemisinin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
ivermectin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
ozone  (EXP,ISO)
paracetamol  (ISO)
perfluorooctanoic acid  (ISO)
rimonabant  (ISO)
rotenone  (EXP)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
sunitinib  (ISO)
testosterone  (EXP)
trovafloxacin  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The primary structure of rat ribosomal protein L18. Devi KR, etal., DNA 1988 Apr;7(3):157-62.
3. Coordinate regulation of ribosomal protein mRNA level in regenerating rat liver. Study with the corresponding mouse cloned cDNAs. Faliks D and Meyuhas O, Nucleic Acids Res. 1982 Feb 11;10(3):789-801.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Semiquantitative proteomic analysis of rat forebrain postsynaptic density fractions by mass spectrometry. Peng J, etal., J Biol Chem. 2004 May 14;279(20):21003-11. doi: 10.1074/jbc.M400103200. Epub 2004 Mar 12.
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Differential expression of diacylglycerol kinase iota and L18A mRNAs in the brains of alcohol-preferring AA and alcohol-avoiding ANA rats. Sommer W, etal., Mol Psychiatry. 2001 Jan;6(1):103-8; 5.
Additional References at PubMed
PMID:12477932   PMID:12962325   PMID:15489334   PMID:16751257   PMID:19946888   PMID:21423176   PMID:21630459   PMID:22871113   PMID:24625528   PMID:25957688   PMID:30053369  


Genomics

Comparative Map Data
Rpl18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2196,188,811 - 96,191,452 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl196,188,112 - 96,191,452 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,574,246 - 101,576,887 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01110,046,944 - 110,049,585 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01103,337,321 - 103,339,962 (+)NCBIRnor_WKY
Rnor_6.01101,700,910 - 101,703,551 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,701,975 - 101,703,550 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,779,742 - 102,782,383 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,186,553 - 96,189,194 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1196,265,737 - 96,267,304 (+)NCBI
Celera190,442,010 - 90,444,651 (+)NCBICelera
Cytogenetic Map1q22NCBI
RPL18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381948,615,331 - 48,619,178 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1948,615,328 - 48,619,184 (-)EnsemblGRCh38hg38GRCh38
GRCh371949,118,588 - 49,122,435 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,810,400 - 53,814,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 341953,810,400 - 53,814,245NCBI
Celera1945,983,453 - 45,987,298 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,497,774 - 45,501,866 (-)NCBIHuRef
CHM1_11949,120,459 - 49,124,550 (-)NCBICHM1_1
T2T-CHM13v2.01951,609,800 - 51,613,662 (-)NCBIT2T-CHM13v2.0
Rpl18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,364,891 - 45,370,259 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,364,881 - 45,370,260 (+)EnsemblGRCm39 Ensembl
GRCm38745,715,467 - 45,720,835 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,715,457 - 45,720,836 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,973,441 - 52,976,205 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,586,113 - 45,588,877 (+)NCBIMGSCv36mm8
MGSCv361197,001,760 - 97,002,425 (+)NCBIMGSCv36mm8
Celera741,180,612 - 41,183,376 (+)NCBICelera
Cytogenetic Map7B3NCBI
Rpl18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,930,614 - 1,933,037 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,929,643 - 1,933,077 (+)NCBIChiLan1.0ChiLan1.0
RPL18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11954,209,224 - 54,213,293 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,209,173 - 54,213,293 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01945,617,033 - 45,620,954 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RPL18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,690,021 - 107,694,586 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,688,074 - 107,694,596 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,211,515 - 107,216,012 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,214,085 - 108,218,589 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1108,212,137 - 108,218,599 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,880,621 - 107,885,114 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,527,916 - 107,532,404 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,363,625 - 108,368,119 (+)NCBIUU_Cfam_GSD_1.0
Rpl18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,046,894 - 21,050,552 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366642,665,084 - 2,668,706 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,974,309 - 53,978,544 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,974,353 - 53,978,681 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,641,378 - 49,645,068 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366607321,734,896 - 21,738,778 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248325,254,263 - 5,257,865 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpl18
8 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:135
Count of miRNA genes:124
Interacting mature miRNAs:131
Transcripts:ENSRNOT00000028555
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)190532338123479925Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)190664883143200202Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192184926137184926Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)192948896144267916Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)194494440117601394Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642722214537671Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 14 14 14 3 14 20 16 27
Medium 1 29 43 27 16 27 8 11 54 19 14 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000028555   ⟹   ENSRNOP00000028555
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl196,188,760 - 96,191,451 (+)Ensembl
Rnor_6.0 Ensembl1101,701,975 - 101,703,550 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097220   ⟹   ENSRNOP00000077861
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl196,188,826 - 96,191,452 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098847   ⟹   ENSRNOP00000085693
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl196,188,770 - 96,191,452 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103343   ⟹   ENSRNOP00000096539
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl196,188,112 - 96,191,452 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116041   ⟹   ENSRNOP00000088224
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl196,188,841 - 96,191,450 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116461   ⟹   ENSRNOP00000095503
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl196,188,112 - 96,191,452 (+)Ensembl
RefSeq Acc Id: NM_031102   ⟹   NP_112364
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2196,188,811 - 96,191,452 (+)NCBI
Rnor_6.01101,700,910 - 101,703,551 (+)NCBI
Rnor_5.01102,779,742 - 102,782,383 (+)NCBI
RGSC_v3.4196,186,553 - 96,189,194 (+)RGD
Celera190,442,010 - 90,444,651 (+)RGD
Sequence:
RefSeq Acc Id: XM_006229161   ⟹   XP_006229223
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2196,189,300 - 96,191,452 (+)NCBI
Rnor_6.01101,701,001 - 101,703,551 (+)NCBI
Rnor_5.01102,779,742 - 102,782,383 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_112364   ⟸   NM_031102
- UniProtKB: P12001 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006229223   ⟸   XM_006229161
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A4M9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000028555   ⟸   ENSRNOT00000028555
RefSeq Acc Id: ENSRNOP00000085693   ⟸   ENSRNOT00000098847
RefSeq Acc Id: ENSRNOP00000077861   ⟸   ENSRNOT00000097220
RefSeq Acc Id: ENSRNOP00000096539   ⟸   ENSRNOT00000103343
RefSeq Acc Id: ENSRNOP00000095503   ⟸   ENSRNOT00000116461
RefSeq Acc Id: ENSRNOP00000088224   ⟸   ENSRNOT00000116041
Protein Domains
Ribosomal_L18e/L15P

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P12001-F1-model_v2 AlphaFold P12001 1-188 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621182 AgrOrtholog
BioCyc Gene G2FUF-59653 BioCyc
Ensembl Genes ENSRNOG00000021035 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000028555.5 UniProtKB/TrEMBL
  ENSRNOP00000077861.1 UniProtKB/TrEMBL
  ENSRNOP00000085693.1 UniProtKB/TrEMBL
  ENSRNOP00000088224 ENTREZGENE
  ENSRNOP00000088224.1 UniProtKB/TrEMBL
  ENSRNOP00000095503.1 UniProtKB/TrEMBL
  ENSRNOP00000096539 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000028555.7 UniProtKB/TrEMBL
  ENSRNOT00000097220.1 UniProtKB/TrEMBL
  ENSRNOT00000098847.1 UniProtKB/TrEMBL
  ENSRNOT00000103343 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000116041 ENTREZGENE
  ENSRNOT00000116041.1 UniProtKB/TrEMBL
  ENSRNOT00000116461.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7308070 IMAGE-MGC_LOAD
InterPro L18e/L15P_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L18e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L18e/L15P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L18e_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:81766 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105408 IMAGE-MGC_LOAD
NCBI Gene 81766 ENTREZGENE
PANTHER PTHR10934 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L18 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl18 PhenoGen
PROSITE RIBOSOMAL_L18E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52080 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHS7_RAT UniProtKB/TrEMBL
  A0A8I5YC25_RAT UniProtKB/TrEMBL
  A0A8I6A4M9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B2T7_RAT UniProtKB/TrEMBL
  A0A8I6GD73_RAT UniProtKB/TrEMBL
  P12001 ENTREZGENE
  Q0QEW8_RAT UniProtKB/TrEMBL
  RL18_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-26 Rpl18  ribosomal protein L18      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Rpl18  ribosomal protein L18      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_homology amino acid sequence has 87% identity to X. laevis ribosomal protein L14 633847