Micb (MHC class I polypeptide-related sequence B) - Rat Genome Database

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Gene: Micb (MHC class I polypeptide-related sequence B) Rattus norvegicus
Analyze
Symbol: Micb
Name: MHC class I polypeptide-related sequence B
RGD ID: 1564508
Description: Predicted to enable natural killer cell lectin-like receptor binding activity. Predicted to be involved in several processes, including immune response-activating cell surface receptor signaling pathway; negative regulation of defense response to virus by host; and response to retinoic acid. Predicted to be anchored component of membrane. Predicted to be active in external side of plasma membrane and extracellular space. Orthologous to human MICA (MHC class I polypeptide-related sequence A) and MICB (MHC class I polypeptide-related sequence B); INTERACTS WITH acrylamide; bisphenol A; glycidol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MHC class I-like located near the leukocyte receptor complex 2; MHC class I-like located near the LRC, 2; MHC class I-like protein MILL2; MHC I like leukocyte 2; Mill2; Mill2 gene for MHC class I-like located near the LRC, 2, exon 3, partial cds, strain:LEW.1lm1
RGD Orthologs
Human
Mouse
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2178,495,779 - 78,513,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,495,779 - 78,512,827 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx183,884,920 - 83,902,263 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0192,441,736 - 92,459,267 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0185,640,035 - 85,657,377 (+)NCBIRnor_WKY
Rnor_6.0179,754,587 - 79,772,092 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,754,587 - 79,772,092 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,016,678 - 81,033,651 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,199,668 - 78,216,687 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera172,962,833 - 72,979,882 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9497295   PMID:11239445   PMID:11287116   PMID:11491531   PMID:12569559   PMID:12782710   PMID:15162429  


Genomics

Comparative Map Data
Micb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2178,495,779 - 78,513,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,495,779 - 78,512,827 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx183,884,920 - 83,902,263 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0192,441,736 - 92,459,267 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0185,640,035 - 85,657,377 (+)NCBIRnor_WKY
Rnor_6.0179,754,587 - 79,772,092 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,754,587 - 79,772,092 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,016,678 - 81,033,651 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4178,199,668 - 78,216,687 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera172,962,833 - 72,979,882 (+)NCBICelera
Cytogenetic Map1q21NCBI
MICB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,494,918 - 31,511,124 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl631,494,881 - 31,511,124 (+)EnsemblGRCh38hg38GRCh38
GRCh37631,462,695 - 31,478,901 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,573,945 - 31,586,880 (+)NCBINCBI36Build 36hg18NCBI36
Build 34631,573,944 - 31,586,879NCBI
Celera633,071,633 - 33,077,144 (+)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,252,690 - 31,265,723 (+)NCBIHuRef
CHM1_1631,468,019 - 31,481,042 (+)NCBICHM1_1
T2T-CHM13v2.0631,348,026 - 31,364,224 (+)NCBIT2T-CHM13v2.0
Mill2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,573,878 - 18,603,621 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,573,891 - 18,599,327 (+)EnsemblGRCm39 Ensembl
GRCm38718,839,958 - 18,869,696 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl718,839,966 - 18,865,402 (+)EnsemblGRCm38mm10GRCm38
MGSCv37719,425,315 - 19,444,002 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36717,998,488 - 18,021,211 (+)NCBIMGSCv36mm8
Celera716,239,887 - 16,258,480 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.35NCBI
MICB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,042,011 - 32,057,761 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0631,151,935 - 31,167,567 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MICB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,518,365 - 40,532,637 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604431,347,368 - 31,422,297 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 25 11
Low 3 42 31 16 18 16 8 10 74 29 16 8
Below cutoff 1 26 25 1 25 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001017468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB113963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB114035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC093995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC110846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000083211   ⟹   ENSRNOP00000074366
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl178,495,779 - 78,512,827 (+)Ensembl
Rnor_6.0 Ensembl179,754,587 - 79,772,092 (+)Ensembl
RefSeq Acc Id: NM_001017468   ⟹   NP_001017468
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2178,495,779 - 78,513,030 (+)NCBI
Rnor_6.0179,754,587 - 79,772,092 (+)NCBI
Rnor_5.0181,016,678 - 81,033,651 (+)NCBI
RGSC_v3.4178,199,668 - 78,216,687 (+)RGD
Celera172,962,833 - 72,979,882 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001017468 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A0A0G2K7V7 (Get FASTA)   NCBI Sequence Viewer  
  BAD54799 (Get FASTA)   NCBI Sequence Viewer  
  BAD54800 (Get FASTA)   NCBI Sequence Viewer  
  BAD54801 (Get FASTA)   NCBI Sequence Viewer  
  BAD54802 (Get FASTA)   NCBI Sequence Viewer  
  BAD54803 (Get FASTA)   NCBI Sequence Viewer  
  BAD54804 (Get FASTA)   NCBI Sequence Viewer  
  BAD54805 (Get FASTA)   NCBI Sequence Viewer  
  BAD54806 (Get FASTA)   NCBI Sequence Viewer  
  BAD54807 (Get FASTA)   NCBI Sequence Viewer  
  BAD54808 (Get FASTA)   NCBI Sequence Viewer  
  BAD54809 (Get FASTA)   NCBI Sequence Viewer  
  BAD54810 (Get FASTA)   NCBI Sequence Viewer  
  BAD54811 (Get FASTA)   NCBI Sequence Viewer  
  BAD54812 (Get FASTA)   NCBI Sequence Viewer  
  BAD54813 (Get FASTA)   NCBI Sequence Viewer  
  BAD54814 (Get FASTA)   NCBI Sequence Viewer  
  BAD54815 (Get FASTA)   NCBI Sequence Viewer  
  BAD54816 (Get FASTA)   NCBI Sequence Viewer  
  BAD54817 (Get FASTA)   NCBI Sequence Viewer  
  BAD54818 (Get FASTA)   NCBI Sequence Viewer  
  BAD54819 (Get FASTA)   NCBI Sequence Viewer  
  BAD54820 (Get FASTA)   NCBI Sequence Viewer  
  BAD54821 (Get FASTA)   NCBI Sequence Viewer  
  BAD54822 (Get FASTA)   NCBI Sequence Viewer  
  BAD54823 (Get FASTA)   NCBI Sequence Viewer  
  EDM08254 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001017468   ⟸   NM_001017468
- Peptide Label: precursor
- UniProtKB: Q60I19 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074366   ⟸   ENSRNOT00000083211
Protein Domains
Ig-like C1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K7V7-F1-model_v2 AlphaFold A0A0G2K7V7 1-372 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689750
Promoter ID:EPDNEW_R274
Type:single initiation site
Name:Micb_1
Description:MHC class I polypeptide-related sequence B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0179,754,588 - 79,754,648EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564508 AgrOrtholog
BioCyc Gene G2FUF-60552 BioCyc
Ensembl Genes ENSRNOG00000057645 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000074366 ENTREZGENE
  ENSRNOP00000074366.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083211 ENTREZGENE
  ENSRNOT00000083211.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
  3.30.500.10 UniProtKB/Swiss-Prot
InterPro Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_C1-set UniProtKB/Swiss-Prot
  MHC_I-like_Ag-recog UniProtKB/Swiss-Prot
  MHC_I-like_Ag-recog_sf UniProtKB/Swiss-Prot
  MHC_I/II-like_Ag-recog UniProtKB/Swiss-Prot
KEGG Report rno:365212 UniProtKB/Swiss-Prot
NCBI Gene 365212 ENTREZGENE
Pfam C1-set UniProtKB/Swiss-Prot
  MHC_I UniProtKB/Swiss-Prot
PhenoGen Micb PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
SMART IGc1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
  SSF54452 UniProtKB/Swiss-Prot
UniProt A0A0G2K7V7 ENTREZGENE
  A0A8L2R8P8_RAT UniProtKB/TrEMBL
  MILL2_RAT UniProtKB/Swiss-Prot
  Q60I19 ENTREZGENE
UniProt Secondary Q60I19 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-02-18 Micb  MHC class I polypeptide-related sequence B  Mill2  MHC I like leukocyte 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Mill2  MHC I like leukocyte 2  Mill2  Mill2 gene for MHC class I-like located near the LRC, 2, exon 3, partial cds, strain:LEW.1lm1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 Mill2  Mill2 gene for MHC class I-like located near the LRC, 2, exon 3, partial cds, strain:LEW.1lm1      Symbol and Name status set to provisional 70820 PROVISIONAL