Fcgrt (Fc fragment of IgG receptor and transporter)

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Gene: Fcgrt (Fc fragment of IgG receptor and transporter) Rattus norvegicus

Analyze

Symbol:

Fcgrt

Name:

Fc fragment of IgG receptor and transporter

RGD ID:

61811

Description:

Exhibits beta-2-microglobulin binding activity. Predicted to be involved in immune response. Predicted to localize to external side of plasma membrane and extracellular space. Orthologous to human FCGRT (Fc fragment of IgG receptor and transporter); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; 3H-1,2-dithiole-3-thione.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

Fc fragment immunoglobulin G receptor; Fc fragment of IgG, receptor, transporter, alpha; Fc receptor IgG alpha chain transporter; Fc receptor, IgG, alpha chain transporter; FcRn; igG Fc fragment receptor transporter alpha chain; igG receptor FcRn large subunit p51; neonatal Fc receptor

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	95,574,436 - 95,584,171 (-)	NCBI
Rnor_6.0 Ensembl	1	101,086,877 - 101,095,594 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	101,086,872 - 101,096,159 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	102,151,852 - 102,161,703 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	95,566,717 - 95,575,645 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	95,644,827 - 95,653,756 (-)	NCBI
Celera	1	89,835,561 - 89,844,654 (-)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrotoluene (EXP)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

cyclophosphamide (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diethylstilbestrol (ISO)

elemental selenium (ISO)

ethanol (EXP,ISO)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

hexachlorobenzene (EXP)

indometacin (ISO)

lead diacetate (ISO)

methapyrilene (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-methyl-N'-nitro-N-nitrosoguanidine (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

Soman (EXP)

sulindac sulfide (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

topotecan (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Fc-gamma receptor signaling pathway (IEA)

humoral immune response (TAS)

Cellular Component

endosome membrane (IEA)

external side of plasma membrane (IBA)

extracellular space (IBA)

integral component of membrane (IEA)

Molecular Function

beta-2-microglobulin binding (IBA,IDA)

IgG binding (ISO)

IgG receptor activity (TAS)

peptide antigen binding (IDA)

protein binding (IPI,ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Lebron JA, etal., Cell. 1998 Apr 3;93(1):111-23.
4.	MGD data from the GO Consortium
5.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	Online Mendelian Inheritance in Man, OMIM (TM).
7.	RGD automated data pipeline
8.	RGD automated import pipeline for gene-chemical interactions
9.	Simister NE and Mostov KE, Cold Spring Harb Symp Quant Biol 1989;54 Pt 1(24):571-80.
10.	Simister NE and Mostov KE, Nature 1989 Jan 12;337(6203):184-7.
11.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12.	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
13.	Wernick NL, etal., J Biol Chem. 2005 Feb 25;280(8):7309-16. doi: 10.1074/jbc.M410752200. Epub 2004 Dec 14.

Additional References at PubMed

PMID:7964511	PMID:7969498	PMID:9493268	PMID:15169676	PMID:15489334	PMID:16382279	PMID:18818657	PMID:19164298	PMID:22573886	PMID:22969064	PMID:23220220	PMID:24802048
PMID:25658443	PMID:26887834	PMID:33283642

Genomics

Comparative Map Data

Fcgrt
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	95,574,436 - 95,584,171 (-)	NCBI
Rnor_6.0 Ensembl	1	101,086,877 - 101,095,594 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	101,086,872 - 101,096,159 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	102,151,852 - 102,161,703 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	95,566,717 - 95,575,645 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	95,644,827 - 95,653,756 (-)	NCBI
Celera	1	89,835,561 - 89,844,654 (-)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

FCGRT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	49,506,816 - 49,526,428 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	49,512,661 - 49,526,428 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	50,015,918 - 50,029,685 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	19	50,015,536 - 50,029,685 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	54,708,304 - 54,721,402 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	19	54,708,303 - 54,721,400	NCBI
Celera	19	46,884,871 - 46,899,020 (+)	NCBI
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	46,392,637 - 46,406,719 (+)	NCBI		HuRef
CHM1_1	19	50,017,336 - 50,031,504 (+)	NCBI		CHM1_1

Fcgrt
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	44,742,417 - 44,753,246 (-)	NCBI	GRCm39		mm39
GRCm38	7	45,092,993 - 45,103,822 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	45,092,990 - 45,103,851 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	52,348,363 - 52,359,192 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	7	44,961,106 - 44,971,134 (-)	NCBI			mm8
Celera	7	40,545,146 - 40,556,581 (-)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	29.12	NCBI

Fcgrt
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955559	1,318,967 - 1,332,141 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955559	1,320,441 - 1,331,962 (-)	NCBI	ChiLan1.0	ChiLan1.0

FCGRT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	55,442,760 - 55,459,904 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	55,442,760 - 55,459,904 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	46,525,053 - 46,539,136 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

FCGRT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	1	106,982,833 - 106,991,467 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	1	106,982,833 - 106,991,574 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Fcgrt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936664	3,368,063 - 3,381,039 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FCGRT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	54,581,128 - 54,611,272 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	54,581,103 - 54,599,193 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	50,310,155 - 50,328,168 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FCGRT
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	42,693,531 - 42,704,686 (+)	NCBI
ChlSab1.1 Ensembl	6	42,694,344 - 42,704,472 (+)	Ensembl

Fcgrt
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624832	4,710,024 - 4,718,997 (-)	NCBI

Position Markers

BQ211283

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	1	102,156,730 - 102,156,885	UniSTS	Rnor5.0
RH 3.4 Map	1	908.4	UniSTS
Cytogenetic Map	1	q22	UniSTS

D37874

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	101,086,983 - 101,087,078	NCBI	Rnor6.0
Rnor_5.0	1	102,151,963 - 102,152,058	UniSTS	Rnor5.0
RGSC_v3.4	1	95,566,823 - 95,566,918	UniSTS	RGSC3.4
Celera	1	89,835,667 - 89,835,762	UniSTS
Cytogenetic Map	1	q22	UniSTS

D1Bda16

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	101,086,953 - 101,087,207	NCBI	Rnor6.0
Rnor_5.0	1	102,151,933 - 102,152,187	UniSTS	Rnor5.0
RGSC_v3.4	1	95,566,793 - 95,567,047	UniSTS	RGSC3.4
Celera	1	89,835,637 - 89,835,891	UniSTS
Cytogenetic Map	1	q22	UniSTS

RH141669

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	101,094,007 - 101,094,206	NCBI	Rnor6.0
Rnor_5.0	1	102,159,552 - 102,159,751	UniSTS	Rnor5.0
RGSC_v3.4	1	95,574,058 - 95,574,257	UniSTS	RGSC3.4
Celera	1	89,843,067 - 89,843,266	UniSTS
RH 3.4 Map	1	908.09	UniSTS
Cytogenetic Map	1	q22	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5655769	122614963	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	23406428	108057505	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	25951907	130917265	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34993530	173445086	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	35377692	217372257	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43579208	126240667	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43579208	126240667	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43579208	126240667	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	1	43579208	126240667	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43579208	126240667	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	49147799	156446783	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49578577	169852184	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49578693	217054291	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	57761301	104391981	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	58209327	103209327	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	58354072	161711996	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	64588516	125875986	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	66113339	122614963	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	79134941	113593716	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	79689548	124689548	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	82788437	239853971	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	83502376	128502376	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	83656882	126240667	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	85779320	130779320	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	85917265	130917265	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	86776571	131776571	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	88634585	106002500	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	90804143	161321256	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)	1	91093646	136093646	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	94201400	184846632	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	94201400	197187904	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	94225372	130917265	Rat
1300153	Bp171	Blood pressure QTL 171	3.37		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94364073	153076991	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	95304961	156446783	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	99983293	127203999	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	99983293	188289386	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	99983293	198656062	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	99983293	216213510	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	99983293	216325819	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	100131562	236763528	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	100354344	145354344	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	54
Count of miRNA genes:	46
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000027944
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	37	57	41	19	41	8	11	62	35	38	11	8
Low		6							12		3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_033351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017589060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M35495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000027944 ⟹ ENSRNOP00000027944

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	101,086,877 - 101,095,594 (-)	Ensembl

RefSeq Acc Id:

NM_033351 ⟹ NP_203502

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,574,441 - 95,583,560 (-)	NCBI
Rnor_6.0	1	101,086,877 - 101,095,594 (-)	NCBI
Rnor_5.0	1	102,151,852 - 102,161,703 (-)	NCBI
RGSC_v3.4	1	95,566,717 - 95,575,645 (-)	RGD
Celera	1	89,835,561 - 89,844,654 (-)	RGD

Sequence:

show sequence

AGTTCTGTAATTAATTAACTAACGTGGATCAAATGAGAAGGTGAAAGTTCACACAGGAGCACTC
CTGTCGTCTTGGACTGGGTCTCCATCCCACCATCCAGTGCCCTGGTCTACGAAGAGTCCACAGG
GACCTTGTGAAGAATCAACAAGGCGGGGTCCAGAGGAGTCACGTGTGCCTTCCACTCCGGGTCG
CCCTGTCAGGATGGGGATGTCCCAGCCCGGGGTCCTCCTCAGCCTCTTATTGGTCCTCCTGCCT
CAGACCTGGGGAGCGGAGCCCCGTCTCCCACTGATGTATCATCTTGCAGCTGTGTCTGACTTAT
CAACGGGGCTTCCCTCTTTCTGGGCCACGGGCTGGCTGGGTGCTCAGCAATATCTGACCTACAA
CAACCTGCGGCAGGAGGCTGACCCCTGTGGGGCCTGGATATGGGAAAACCAGGTGTCTTGGTAT
TGGGAGAAGGAGACCACGGATCTGAAAAGCAAAGAACAGCTCTTCTTGGAGGCCATCAGGACCC
TGGAGAACCAAATAAATGGGACCTTCACACTGCAGGGCCTGCTGGGCTGTGAACTGGCCCCTGA
TAATTCTTCATTGCCCACGGCTGTGTTTGCCCTCAATGGTGAGGAGTTCATGCGGTTCAACCCA
AGAACGGGCAACTGGAGTGGGGAGTGGCCGGAGACAGATATCGTTGGTAATCTGTGGATGAAGC
AACCTGAGGCGGCCAGGAAGGAGAGCGAGTTCCTGCTAACTTCTTGTCCTGAGCGGCTGCTAGG
CCACCTGGAGAGGGGCCGTCAGAACCTGGAGTGGAAGGAGCCGCCATCTATGCGCCTGAAGGCC
CGTCCTGGCAACTCTGGCTCCTCAGTACTGACCTGTGCTGCTTTCTCCTTCTACCCGCCGGAGC
TCAAGTTTCGATTCCTGCGCAATGGGCTAGCCTCAGGCTCTGGGAATTGCAGCACTGGTCCCAA
TGGTGATGGATCTTTCCATGCATGGTCATTGCTAGAGGTCAAACGTGGAGATGAACACCATTAC
CAATGTCAAGTGGAGCATGAGGGGCTGGCCCAGCCTCTCACTGTGGACCTAGATTCGCCCGCCA
GATCTTCTGTGCCTGTGGTCGGAATCATTCTTGGTTTATTGCTGGTGGTAGTGGCCATCGCAGG
GGGTGTGCTGCTATGGAACAGGATGCGAAGTGGGCTGCCAGCCCCATGGCTTTCTCTCAGTGGT
GATGACTCTGGCGACCTATTGCCTGGTGGGAACTTGCCCCCGGAGGCTGAACCTCAAGGTGTAA
ATGCCTTTCCGGCCACTTCCTGATGCCAACCCAGGCCCCATACCCATTGCAGCCTGTGGGGCTG
TGTGACCTCCTGAACTGTCTCTGAGCCTCCCGAGGGAGCCCTGGGCTGGATGTCCTCCTCGTGG
ATCCCTTCTTTTGTGGCCTGCTTCAGTTTCCCCTCTTAATGTCAATGGCTATTTCCATCTCCAC
ATAAATTTGGGCCCAAATCTGTGTGTGCATCGTTATTCTCAGGTTTCAGGCAGCCGGAATAAAT
TGAACAAGTTTGAG

hide sequence

RefSeq Acc Id:

XM_006229043 ⟹ XP_006229105

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,574,436 - 95,584,171 (-)	NCBI
Rnor_6.0	1	101,086,872 - 101,096,159 (-)	NCBI
Rnor_5.0	1	102,151,852 - 102,161,703 (-)	NCBI

Sequence:

show sequence

AAGAGCTCGTGGGTGGAGCTGGATTCCCTCAGAGTTCCACAGTCCTAACTGTGTACAGACAGGA
TGTAAGAAAAGAACTAGAGGCTCCGAGCAGAGGATCCATCGGCTGCAGTTCTGTAATTAATTAA
CTAACGTGGATCAAATGAGAAGGTGAAAGTTCACACAGGAGCACTCCTGTCGTCTTGGACTGGG
TCTCCATCCCACCATCCAGTGCCCTGGTCTACGAAGAGTCCACAGGGACCTTGTGAAGAATCAA
CAAGGCGGGGTCCAGAGGAGTCACGTGTGCCTTCCACTCCGGGTCGCCCTGTCAGGATGGGGAT
GTCCCAGCCCGGGGTCCTCCTCAGCCTCTTATTGGTCCTCCTGCCTCAGACCTGGGGAGCGGAG
CCCCGTCTCCCACTGATGTATCATCTTGCAGCTGTGTCTGACTTATCAACGGGGCTTCCCTCTT
TCTGGGCCACGGGCTGGCTGGGTGCTCAGCAATATCTGACCTACAACAACCTGCGGCAGGAGGC
TGACCCCTGTGGGGCCTGGATATGGGAAAACCAGGTGTCTTGGTATTGGGAGAAGGAGACCACG
GATCTGAAAAGCAAAGAACAGCTCTTCTTGGAGGCCATCAGGACCCTGGAGAACCAAATAAATG
GGACCTTCACACTGCAGGGCCTGCTGGGCTGTGAACTGGCCCCTGATAATTCTTCATTGCCCAC
GGCTGTGTTTGCCCTCAATGGTGAGGAGTTCATGCGGTTCAACCCAAGAACGGGCAACTGGAGT
GGGGAGTGGCCGGAGACAGATATCGTTGGTAATCTGTGGATGAAGCAACCTGAGGCGGCCAGGA
AGGAGAGCGAGTTCCTGCTAACTTCTTGTCCTGAGCGGCTGCTAGGCCACCTGGAGAGGGGCCG
TCAGAACCTGGAGTGGAAGGAGCCGCCATCTATGCGCCTGAAGGCCCGTCCTGGCAACTCTGGC
TCCTCAGTACTGACCTGTGCTGCTTTCTCCTTCTACCCGCCGGAGCTCAAGTTTCGATTCCTGC
GCAATGGGCTAGCCTCAGGCTCTGGGAATTGCAGCACTGGTCCCAATGGTGATGGATCTTTCCA
TGCATGGTCATTGCTAGAGGTCAAACGTGGAGATGAACACCATTACCAATGTCAAGTGGAGCAT
GAGGGGCTGGCCCAGCCTCTCACTGTGGACCTAGATTCGCCCGCCAGATCTTCTGTGCCTGTGG
TCGGAATCATTCTTGGTTTATTGCTGGTGGTAGTGGCCATCGCAGGGGGTGTGCTGCTATGGAA
CAGGATGCGAAGTGGGCTGCCAGCCCCATGGCTTTCTCTCAGTGGTGATGACTCTGGCGACCTA
TTGCCTGGTGGGAACTTGCCCCCGGAGGCTGAACCTCAAGGTGTAAATGCCTTTCCGGCCACTT
CCTGATGCCAACCCAGGCCCCATACCCATTGCAGCCTGTGGGGCTGTGTGACCTCCTGAACTGT
CTCTGAGCCTCCCGAGGGAGCCCTGGGCTGGATGTCCTCCTCGTGGATCCCTTCTTTTGTGGCC
TGCTTCAGTTTCCCCTCTTAATGTCAATGGCTATTTCCATCTCCACATAAATTTGGGCCCAAAT
CTGTGTGTGCATCGTTATTCTCAGGTTTCAGGCAGCCGGAATAAATTGAACAAGTTTGAGAAAG
A

hide sequence

RefSeq Acc Id:

XM_008759343 ⟹ XP_008757565

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,574,436 - 95,584,095 (-)	NCBI
Rnor_6.0	1	101,086,872 - 101,096,159 (-)	NCBI

Sequence:

show sequence

AAGAGCTCGTGGGTGGAGCTGGATTCCCTCAGAGTTCCACAGTCCTAACTGTGTACAGACAGGA
TGTAAGAAAAGAACTAGAGGCTCCGAGCAGAGGATCCATCGGCTGCAGTGCCCTGGTCTACGAA
GAGTCCACAGGGACCTTGTGAAGAATCAACAAGGCGGGGTCCAGAGGAGTCACGTGTGCCTTCC
ACTCCGGGTCGCCCTGTCAGGATGGGGATGTCCCAGCCCGGGGTCCTCCTCAGCCTCTTATTGG
TCCTCCTGCCTCAGACCTGGGGAGCGGAGCCCCGTCTCCCACTGATGTATCATCTTGCAGCTGT
GTCTGACTTATCAACGGGGCTTCCCTCTTTCTGGGCCACGGGCTGGCTGGGTGCTCAGCAATAT
CTGACCTACAACAACCTGCGGCAGGAGGCTGACCCCTGTGGGGCCTGGATATGGGAAAACCAGG
TGTCTTGGTATTGGGAGAAGGAGACCACGGATCTGAAAAGCAAAGAACAGCTCTTCTTGGAGGC
CATCAGGACCCTGGAGAACCAAATAAATGGGACCTTCACACTGCAGGGCCTGCTGGGCTGTGAA
CTGGCCCCTGATAATTCTTCATTGCCCACGGCTGTGTTTGCCCTCAATGGTGAGGAGTTCATGC
GGTTCAACCCAAGAACGGGCAACTGGAGTGGGGAGTGGCCGGAGACAGATATCGTTGGTAATCT
GTGGATGAAGCAACCTGAGGCGGCCAGGAAGGAGAGCGAGTTCCTGCTAACTTCTTGTCCTGAG
CGGCTGCTAGGCCACCTGGAGAGGGGCCGTCAGAACCTGGAGTGGAAGGAGCCGCCATCTATGC
GCCTGAAGGCCCGTCCTGGCAACTCTGGCTCCTCAGTACTGACCTGTGCTGCTTTCTCCTTCTA
CCCGCCGGAGCTCAAGTTTCGATTCCTGCGCAATGGGCTAGCCTCAGGCTCTGGGAATTGCAGC
ACTGGTCCCAATGGTGATGGATCTTTCCATGCATGGTCATTGCTAGAGGTCAAACGTGGAGATG
AACACCATTACCAATGTCAAGTGGAGCATGAGGGGCTGGCCCAGCCTCTCACTGTGGACCTAGA
TTCGCCCGCCAGATCTTCTGTGCCTGTGGTCGGAATCATTCTTGGTTTATTGCTGGTGGTAGTG
GCCATCGCAGGGGGTGTGCTGCTATGGAACAGGATGCGAAGTGGGCTGCCAGCCCCATGGCTTT
CTCTCAGTGGTGATGACTCTGGCGACCTATTGCCTGGTGGGAACTTGCCCCCGGAGGCTGAACC
TCAAGGTGTAAATGCCTTTCCGGCCACTTCCTGATGCCAACCCAGGCCCCATACCCATTGCAGC
CTGTGGGGCTGTGTGACCTCCTGAACTGTCTCTGAGCCTCCCGAGGGAGCCCTGGGCTGGATGT
CCTCCTCGTGGATCCCTTCTTTTGTGGCCTGCTTCAGTTTCCCCTCTTAATGTCAATGGCTATT
TCCATCTCCACATAAATTTGGGCCCAAATCTGTGTGTGCATCGTTATTCTCAGGTTTCAGGCAG
CCGGAATAAATTGAACAAGTTTGAGAAAGA

hide sequence

RefSeq Acc Id:

XM_017589060 ⟹ XP_017444549

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,574,436 - 95,584,148 (-)	NCBI
Rnor_6.0	1	101,086,872 - 101,096,159 (-)	NCBI

Sequence:

show sequence

AAGAGCTCGTGGGTGGAGCTGGATTCCCTCAGAGTTCCACAGTCCTAACTGTGTACAGACAGGA
TGTAAGAAAAGAACTAGAGGCTCCGAGCAGAGGATCCATCGGCTGCAGAGCCCCGTCTCCCACT
GATGTATCATCTTGCAGCTGTGTCTGACTTATCAACGGGGCTTCCCTCTTTCTGGGCCACGGGC
TGGCTGGGTGCTCAGCAATATCTGACCTACAACAACCTGCGGCAGGAGGCTGACCCCTGTGGGG
CCTGGATATGGGAAAACCAGGTGTCTTGGTATTGGGAGAAGGAGACCACGGATCTGAAAAGCAA
AGAACAGCTCTTCTTGGAGGCCATCAGGACCCTGGAGAACCAAATAAATGGGACCTTCACACTG
CAGGGCCTGCTGGGCTGTGAACTGGCCCCTGATAATTCTTCATTGCCCACGGCTGTGTTTGCCC
TCAATGGTGAGGAGTTCATGCGGTTCAACCCAAGAACGGGCAACTGGAGTGGGGAGTGGCCGGA
GACAGATATCGTTGGTAATCTGTGGATGAAGCAACCTGAGGCGGCCAGGAAGGAGAGCGAGTTC
CTGCTAACTTCTTGTCCTGAGCGGCTGCTAGGCCACCTGGAGAGGGGCCGTCAGAACCTGGAGT
GGAAGGAGCCGCCATCTATGCGCCTGAAGGCCCGTCCTGGCAACTCTGGCTCCTCAGTACTGAC
CTGTGCTGCTTTCTCCTTCTACCCGCCGGAGCTCAAGTTTCGATTCCTGCGCAATGGGCTAGCC
TCAGGCTCTGGGAATTGCAGCACTGGTCCCAATGGTGATGGATCTTTCCATGCATGGTCATTGC
TAGAGGTCAAACGTGGAGATGAACACCATTACCAATGTCAAGTGGAGCATGAGGGGCTGGCCCA
GCCTCTCACTGTGGACCTAGATTCGCCCGCCAGATCTTCTGTGCCTGTGGTCGGAATCATTCTT
GGTTTATTGCTGGTGGTAGTGGCCATCGCAGGGGGTGTGCTGCTATGGAACAGGATGCGAAGTG
GGCTGCCAGCCCCATGGCTTTCTCTCAGTGGTGATGACTCTGGCGACCTATTGCCTGGTGGGAA
CTTGCCCCCGGAGGCTGAACCTCAAGGTGTAAATGCCTTTCCGGCCACTTCCTGATGCCAACCC
AGGCCCCATACCCATTGCAGCCTGTGGGGCTGTGTGACCTCCTGAACTGTCTCTGAGCCTCCCG
AGGGAGCCCTGGGCTGGATGTCCTCCTCGTGGATCCCTTCTTTTGTGGCCTGCTTCAGTTTCCC
CTCTTAATGTCAATGGCTATTTCCATCTCCACATAAATTTGGGCCCAAATCTGTGTGTGCATCG
TTATTCTCAGGTTTCAGGCAGCCGGAATAAATTGAACAAGTTTGAGAAAGA

hide sequence

RefSeq Acc Id:

XM_039109565 ⟹ XP_038965493

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,574,436 - 95,583,991 (-)	NCBI

RefSeq Acc Id:

XM_039109578 ⟹ XP_038965506

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,574,436 - 95,583,182 (-)	NCBI

RefSeq Acc Id:

XM_039109580 ⟹ XP_038965508

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,574,436 - 95,584,171 (-)	NCBI

RefSeq Acc Id:

XM_039109587 ⟹ XP_038965515

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	95,574,436 - 95,584,158 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_203502	(Get FASTA)	NCBI Sequence Viewer
	XP_006229105	(Get FASTA)	NCBI Sequence Viewer
	XP_008757565	(Get FASTA)	NCBI Sequence Viewer
	XP_017444549	(Get FASTA)	NCBI Sequence Viewer
	XP_038965493	(Get FASTA)	NCBI Sequence Viewer
	XP_038965506	(Get FASTA)	NCBI Sequence Viewer
	XP_038965508	(Get FASTA)	NCBI Sequence Viewer
	XP_038965515	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA41611	(Get FASTA)	NCBI Sequence Viewer
	AAH61975	(Get FASTA)	NCBI Sequence Viewer
	EDM07414	(Get FASTA)	NCBI Sequence Viewer
	EDM07415	(Get FASTA)	NCBI Sequence Viewer
	P13599	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_203502 ⟸ NM_033351
- Peptide Label:	precursor
- UniProtKB:	P13599 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGMSQPGVLLSLLLVLLPQTWGAEPRLPLMYHLAAVSDLSTGLPSFWATGWLGAQQYLTYNNLR QEADPCGAWIWENQVSWYWEKETTDLKSKEQLFLEAIRTLENQINGTFTLQGLLGCELAPDNSS LPTAVFALNGEEFMRFNPRTGNWSGEWPETDIVGNLWMKQPEAARKESEFLLTSCPERLLGHLE RGRQNLEWKEPPSMRLKARPGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDG SFHAWSLLEVKRGDEHHYQCQVEHEGLAQPLTVDLDSPARSSVPVVGIILGLLLVVVAIAGGVL LWNRMRSGLPAPWLSLSGDDSGDLLPGGNLPPEAEPQGVNAFPATS hide sequence

RefSeq Acc Id:	XP_006229105 ⟸ XM_006229043
- Peptide Label:	isoform X1
- UniProtKB:	P13599 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGMSQPGVLLSLLLVLLPQTWGAEPRLPLMYHLAAVSDLSTGLPSFWATGWLGAQQYLTYNNLR QEADPCGAWIWENQVSWYWEKETTDLKSKEQLFLEAIRTLENQINGTFTLQGLLGCELAPDNSS LPTAVFALNGEEFMRFNPRTGNWSGEWPETDIVGNLWMKQPEAARKESEFLLTSCPERLLGHLE RGRQNLEWKEPPSMRLKARPGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDG SFHAWSLLEVKRGDEHHYQCQVEHEGLAQPLTVDLDSPARSSVPVVGIILGLLLVVVAIAGGVL LWNRMRSGLPAPWLSLSGDDSGDLLPGGNLPPEAEPQGVNAFPATS hide sequence

RefSeq Acc Id:	XP_008757565 ⟸ XM_008759343
- Peptide Label:	isoform X1
- UniProtKB:	P13599 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGMSQPGVLLSLLLVLLPQTWGAEPRLPLMYHLAAVSDLSTGLPSFWATGWLGAQQYLTYNNLR QEADPCGAWIWENQVSWYWEKETTDLKSKEQLFLEAIRTLENQINGTFTLQGLLGCELAPDNSS LPTAVFALNGEEFMRFNPRTGNWSGEWPETDIVGNLWMKQPEAARKESEFLLTSCPERLLGHLE RGRQNLEWKEPPSMRLKARPGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDG SFHAWSLLEVKRGDEHHYQCQVEHEGLAQPLTVDLDSPARSSVPVVGIILGLLLVVVAIAGGVL LWNRMRSGLPAPWLSLSGDDSGDLLPGGNLPPEAEPQGVNAFPATS hide sequence

RefSeq Acc Id:

XP_017444549 ⟸ XM_017589060

- Peptide Label:

isoform X2

- Sequence:

show sequence

MYHLAAVSDLSTGLPSFWATGWLGAQQYLTYNNLRQEADPCGAWIWENQVSWYWEKETTDLKSK
EQLFLEAIRTLENQINGTFTLQGLLGCELAPDNSSLPTAVFALNGEEFMRFNPRTGNWSGEWPE
TDIVGNLWMKQPEAARKESEFLLTSCPERLLGHLERGRQNLEWKEPPSMRLKARPGNSGSSVLT
CAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQVEHEGLAQ
PLTVDLDSPARSSVPVVGIILGLLLVVVAIAGGVLLWNRMRSGLPAPWLSLSGDDSGDLLPGGN
LPPEAEPQGVNAFPATS

hide sequence

RefSeq Acc Id:

ENSRNOP00000027944 ⟸ ENSRNOT00000027944

RefSeq Acc Id:	XP_038965508 ⟸ XM_039109580
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038965515 ⟸ XM_039109587
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038965493 ⟸ XM_039109565
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038965506 ⟸ XM_039109578
- Peptide Label:	isoform X2

Protein Domains

Ig-like C1-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690023

Promoter ID:

EPDNEW_R548

Type:

single initiation site

Name:

Fcgrt_1

Description:

Fc fragment of IgG receptor and transporter

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	101,095,534 - 101,095,594	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:61811	AgrOrtholog
Ensembl Genes	ENSRNOG00000020583	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000027944	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000027944	ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
	3.30.500.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5623787	IMAGE-MGC_LOAD
InterPro	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig/MHC_CS	UniProtKB/Swiss-Prot
	Ig_C1-set	UniProtKB/Swiss-Prot
	MHC_I-like_Ag-recog	UniProtKB/Swiss-Prot
	MHC_I-like_Ag-recog_sf	UniProtKB/Swiss-Prot
	MHC_I/II-like_Ag-recog	UniProtKB/Swiss-Prot
KEGG Report	rno:29558	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72370	IMAGE-MGC_LOAD
NCBI Gene	29558	ENTREZGENE
Pfam	C1-set	UniProtKB/Swiss-Prot
	MHC_I	UniProtKB/Swiss-Prot
PhenoGen	Fcgrt	PhenoGen
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot
	IG_MHC	UniProtKB/Swiss-Prot
SMART	IGc1	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
	SSF54452	UniProtKB/Swiss-Prot
TIGR	TC204786
UniProt	FCGRN_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-20	Fcgrt	Fc fragment of IgG receptor and transporter	Fcgrt	Fc fragment of IgG, receptor, transporter, alpha	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Fcgrt	Fc fragment of IgG, receptor, transporter, alpha	Fcgrt	Fc receptor, IgG, alpha chain transporter	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Fcgrt	Fc receptor, IgG, alpha chain transporter			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)