 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
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Analyze GeneStrainQTL List |
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Gene Annotator (Annotation Comparison) |
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Cellular Component
Molecular Function
Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | GOA data from the GO Consortium |
| 3. | Lebron JA, etal., Cell. 1998 Apr 3;93(1):111-23. |
| 4. | MGD data from the GO Consortium |
| 5. | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
| 6. | Online Mendelian Inheritance in Man, OMIM (TM). |
| 7. | RGD automated data pipeline |
| 8. | RGD automated import pipeline for gene-chemical interactions |
| 9. | Simister NE and Mostov KE, Cold Spring Harb Symp Quant Biol 1989;54 Pt 1(24):571-80. |
| 10. | Simister NE and Mostov KE, Nature 1989 Jan 12;337(6203):184-7. |
| 11. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
| 12. | Tentative Sequence Data IDs. TIGR Gene Index, Rat Data |
| 13. | Wernick NL, etal., J Biol Chem. 2005 Feb 25;280(8):7309-16. doi: 10.1074/jbc.M410752200. Epub 2004 Dec 14. |
References - uncurated| PubMed | 7964511 7969498 9493268 15169676 15489334 16382279 18818657 19164298 22573886 22969064 23220220 24802048 25658443 26887834 |
Genomics
Comparative Map Data| Fcgrt (Rattus norvegicus - Norway rat) |
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| FCGRT (Homo sapiens - human) |
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| Fcgrt (Mus musculus - house mouse) |
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| Fcgrt (Chinchilla lanigera - long-tailed chinchilla) |
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| FCGRT (Pan paniscus - bonobo/pygmy chimpanzee) |
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| FCGRT (Canis lupus familiaris - dog) |
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| Fcgrt (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| FCGRT (Sus scrofa - pig) |
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| FCGRT (Chlorocebus sabaeus - African green monkey) |
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| Fcgrt (Heterocephalus glaber - naked mole-rat) |
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Position Markers| BQ211283 |
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| D37874 |
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| D1Bda16 |
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| RH141669 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 3 | 37 | 57 | 41 | 19 | 41 | 8 | 11 | 62 | 35 | 38 | 11 | 8 |
| Low | 6 | 12 | 3 | ||||||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_033351 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006229043 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008759343 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017589060 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AAHX01005000 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01005001 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC099450 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC061975 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473979 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ229080 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| M35495 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| X14323 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000027944 ⟹ ENSRNOP00000027944 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_033351 ⟹ NP_203502 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
AGTTCTGTAATTAATTAACTAACGTGGATCAAATGAGAAGGTGAAAGTTCACACAGGAGCACTChide sequence |
| RefSeq Acc Id: | XM_006229043 ⟹ XP_006229105 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
AAGAGCTCGTGGGTGGAGCTGGATTCCCTCAGAGTTCCACAGTCCTAACTGTGTACAGACAGGAhide sequence |
| RefSeq Acc Id: | XM_008759343 ⟹ XP_008757565 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
AAGAGCTCGTGGGTGGAGCTGGATTCCCTCAGAGTTCCACAGTCCTAACTGTGTACAGACAGGAhide sequence |
| RefSeq Acc Id: | XM_017589060 ⟹ XP_017444549 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
AAGAGCTCGTGGGTGGAGCTGGATTCCCTCAGAGTTCCACAGTCCTAACTGTGTACAGACAGGAhide sequence |
Protein Sequences| Protein RefSeqs | NP_203502 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006229105 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008757565 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017444549 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAA41611 | (Get FASTA) | NCBI Sequence Viewer |
| AAH61975 | (Get FASTA) | NCBI Sequence Viewer | |
| CAA32503 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM07414 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM07415 | (Get FASTA) | NCBI Sequence Viewer | |
| P13599 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_203502 ⟸ NM_033351 |
| - Peptide Label: | precursor |
| - UniProtKB: | P13599 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MGMSQPGVLLSLLLVLLPQTWGAEPRLPLMYHLAAVSDLSTGLPSFWATGWLGAQQYLTYNNLRhide sequence |
| RefSeq Acc Id: | XP_006229105 ⟸ XM_006229043 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | P13599 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MGMSQPGVLLSLLLVLLPQTWGAEPRLPLMYHLAAVSDLSTGLPSFWATGWLGAQQYLTYNNLRhide sequence |
| RefSeq Acc Id: | XP_008757565 ⟸ XM_008759343 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | P13599 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MGMSQPGVLLSLLLVLLPQTWGAEPRLPLMYHLAAVSDLSTGLPSFWATGWLGAQQYLTYNNLRhide sequence |
| RefSeq Acc Id: | XP_017444549 ⟸ XM_017589060 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MYHLAAVSDLSTGLPSFWATGWLGAQQYLTYNNLRQEADPCGAWIWENQVSWYWEKETTDLKSKhide sequence |
| RefSeq Acc Id: | ENSRNOP00000027944 ⟸ ENSRNOT00000027944 |
Protein Domains
Ig-like C1-type
TranscriptomePromoters| RGD ID: | 13690023 | ||||||||
| Promoter ID: | EPDNEW_R548 | ||||||||
| Type: | single initiation site | ||||||||
| Name: | Fcgrt_1 | ||||||||
| Description: | Fc fragment of IgG receptor and transporter | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:61811 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000020583 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Protein | ENSRNOP00000027944 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Ensembl Transcript | ENSRNOT00000027944 | ENTREZGENE, UniProtKB/Swiss-Prot |
| Gene3D-CATH | 2.60.40.10 | UniProtKB/Swiss-Prot |
| 3.30.500.10 | UniProtKB/Swiss-Prot | |
| IMAGE_CLONE | IMAGE:5623787 | IMAGE-MGC_LOAD |
| InterPro | Ig-like_dom | UniProtKB/Swiss-Prot |
| Ig-like_dom_sf | UniProtKB/Swiss-Prot | |
| Ig-like_fold | UniProtKB/Swiss-Prot | |
| Ig/MHC_CS | UniProtKB/Swiss-Prot | |
| Ig_C1-set | UniProtKB/Swiss-Prot | |
| MHC_I-like_Ag-recog | UniProtKB/Swiss-Prot | |
| MHC_I-like_Ag-recog_sf | UniProtKB/Swiss-Prot | |
| MHC_I/II-like_Ag-recog | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:29558 | UniProtKB/Swiss-Prot |
| MGC_CLONE | MGC:72370 | IMAGE-MGC_LOAD |
| NCBI Gene | 29558 | ENTREZGENE |
| Pfam | C1-set | UniProtKB/Swiss-Prot |
| MHC_I | UniProtKB/Swiss-Prot | |
| PhenoGen | Fcgrt | PhenoGen |
| PROSITE | IG_LIKE | UniProtKB/Swiss-Prot |
| IG_MHC | UniProtKB/Swiss-Prot | |
| SMART | IGc1 | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | SSF48726 | UniProtKB/Swiss-Prot |
| SSF54452 | UniProtKB/Swiss-Prot | |
| TIGR | TC204786 | |
| UniGene | Rn.15845 | ENTREZGENE |
| UniProt | FCGRN_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2016-01-20 | Fcgrt | Fc fragment of IgG receptor and transporter | Fcgrt | Fc fragment of IgG, receptor, transporter, alpha | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-09-25 | Fcgrt | Fc fragment of IgG, receptor, transporter, alpha | Fcgrt | Fc receptor, IgG, alpha chain transporter | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2002-06-10 | Fcgrt | Fc receptor, IgG, alpha chain transporter | Name updated | 70584 | APPROVED |
RGD Curation Notes| Note Type | Note | Reference |
|---|
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| More on Fcgrt | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 61811 |
| Created: | 2001-04-11 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-03-04 |
| Status: | ACTIVE |
