Fcgrt (Fc fragment of IgG receptor and transporter) - Rat Genome Database

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Gene: Fcgrt (Fc fragment of IgG receptor and transporter) Mus musculus
Analyze
Symbol: Fcgrt
Name: Fc fragment of IgG receptor and transporter
RGD ID: 62103
MGI Page MGI
Description: Predicted to enable IgG binding activity and beta-2-microglobulin binding activity. Predicted to be involved in immune response. Predicted to be located in endosome membrane and plasma membrane. Predicted to be active in external side of plasma membrane and extracellular space. Is expressed in several structures, including genitourinary system; heart valve; intestine; sensory organ; and skeleton. Orthologous to human FCGRT (Fc gamma receptor and transporter).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fc; Fc receptor, IgG, alpha chain transporter; FcRn; igG Fc fragment receptor transporter alpha chain; IgG receptor FcRn large subunit p51; neonatal Fc receptor; neonatal fragment crystallizable Fc receptor
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,742,417 - 44,753,246 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,742,414 - 44,753,275 (-)EnsemblGRCm39 Ensembl
GRCm38745,092,993 - 45,103,822 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,092,990 - 45,103,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,348,363 - 52,359,192 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,961,106 - 44,971,134 (-)NCBIMGSCv36mm8
Celera740,545,146 - 40,556,581 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
chlordecone  (EXP)
chromium(6+)  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
corn oil  (ISO)
cyclophosphamide  (EXP)
cyclosporin A  (ISO)
dexamethasone  (EXP,ISO)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (EXP)
diuron  (ISO)
elemental selenium  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
fipronil  (ISO)
flutamide  (ISO)
folic acid  (EXP)
hexachlorobenzene  (ISO)
indometacin  (ISO)
lead diacetate  (EXP)
methapyrilene  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
paraquat  (ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
pirinixic acid  (EXP)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP)
Soman  (ISO)
sulindac sulfide  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Mechanism of hypoalbuminemia in rodents. Koltun M, etal., Am J Physiol Heart Circ Physiol 2004 Nov 11;.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7504013   PMID:7538537   PMID:7964511   PMID:8605939   PMID:9488722   PMID:10051626   PMID:10081226   PMID:10349636   PMID:10657638   PMID:10836253   PMID:10922068   PMID:10998088  
PMID:11042159   PMID:11076861   PMID:11090878   PMID:11717196   PMID:12477932   PMID:12566415   PMID:12646614   PMID:14610273   PMID:14681479   PMID:15124024   PMID:15627500   PMID:15644205  
PMID:15782199   PMID:16139891   PMID:16141072   PMID:16141073   PMID:16183124   PMID:16210471   PMID:16284651   PMID:16354907   PMID:16415101   PMID:16444258   PMID:16841095   PMID:16849638  
PMID:17077181   PMID:17116709   PMID:17717602   PMID:17878355   PMID:17983586   PMID:18198272   PMID:18272495   PMID:18287559   PMID:18542899   PMID:18599440   PMID:18684948   PMID:18799693  
PMID:18843053   PMID:19188594   PMID:19234152   PMID:19661163   PMID:20012394   PMID:20018855   PMID:20081867   PMID:20133862   PMID:20362552   PMID:20647570   PMID:21041729   PMID:21248252  
PMID:21256596   PMID:21267068   PMID:21368166   PMID:21402891   PMID:21628593   PMID:21690327   PMID:21873635   PMID:21964024   PMID:22001393   PMID:22042859   PMID:22089027   PMID:22189693  
PMID:22193411   PMID:22246033   PMID:22454526   PMID:22570488   PMID:23181795   PMID:23610371   PMID:23923029   PMID:24290911   PMID:24357670   PMID:24550358   PMID:24652290   PMID:24802048  
PMID:25654695   PMID:25658443   PMID:25756612   PMID:25905473   PMID:25918233   PMID:25918417   PMID:26539983   PMID:27225131   PMID:27232760   PMID:27479095   PMID:28330995   PMID:29158374  
PMID:29186471   PMID:30323819   PMID:30326650   PMID:30686564   PMID:30808762   PMID:30811433   PMID:30964743   PMID:31444284   PMID:31553647   PMID:31695028   PMID:31915378   PMID:32182359  
PMID:32313072   PMID:32461366   PMID:33025844   PMID:33032297   PMID:33055243   PMID:33084569   PMID:33122426   PMID:33370294   PMID:33513208   PMID:33741657   PMID:34731029   PMID:35108544  
PMID:35118359   PMID:35364055   PMID:35604122   PMID:35687695   PMID:36202799   PMID:36719773   PMID:36870576   PMID:37071647   PMID:37698877   PMID:37932271   PMID:38607033  


Genomics

Comparative Map Data
Fcgrt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,742,417 - 44,753,246 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,742,414 - 44,753,275 (-)EnsemblGRCm39 Ensembl
GRCm38745,092,993 - 45,103,822 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,092,990 - 45,103,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,348,363 - 52,359,192 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,961,106 - 44,971,134 (-)NCBIMGSCv36mm8
Celera740,545,146 - 40,556,581 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.12NCBI
FCGRT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,512,661 - 49,526,428 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,506,816 - 49,526,428 (+)EnsemblGRCh38hg38GRCh38
GRCh371950,015,918 - 50,029,685 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,708,304 - 54,721,402 (+)NCBINCBI36Build 36hg18NCBI36
Build 341954,708,303 - 54,721,400NCBI
Celera1946,884,871 - 46,899,020 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,392,637 - 46,406,719 (+)NCBIHuRef
CHM1_11950,017,336 - 50,031,504 (+)NCBICHM1_1
T2T-CHM13v2.01952,512,666 - 52,526,423 (+)NCBIT2T-CHM13v2.0
Fcgrt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,710,902 - 104,720,685 (-)NCBIGRCr8
mRatBN7.2195,574,436 - 95,584,171 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,567,175 - 95,584,084 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,959,839 - 100,968,957 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,432,506 - 109,441,624 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,722,909 - 102,732,027 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,086,872 - 101,096,159 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,086,877 - 101,095,594 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,151,852 - 102,161,703 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,566,717 - 95,575,645 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,644,827 - 95,653,756 (-)NCBI
Celera189,835,561 - 89,844,654 (-)NCBICelera
Cytogenetic Map1q22NCBI
Fcgrt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,318,967 - 1,332,141 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,320,441 - 1,331,962 (-)NCBIChiLan1.0ChiLan1.0
FCGRT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,628,042 - 55,642,176 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,548,687 - 57,562,540 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,525,053 - 46,539,136 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,442,760 - 55,459,904 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,442,760 - 55,459,904 (+)Ensemblpanpan1.1panPan2
FCGRT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,982,833 - 106,991,574 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,982,833 - 106,991,467 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,566,112 - 106,574,862 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,502,839 - 107,511,637 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,502,844 - 107,511,442 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,175,946 - 107,184,686 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,818,118 - 106,826,848 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,659,085 - 107,667,872 (-)NCBIUU_Cfam_GSD_1.0
Fcgrt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,749,833 - 21,762,855 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,368,031 - 3,381,045 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,368,063 - 3,381,039 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FCGRT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,581,133 - 54,599,783 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,581,103 - 54,599,193 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,310,155 - 50,328,168 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FCGRT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,693,531 - 42,704,686 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,694,344 - 42,704,472 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607322,625,346 - 22,640,812 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fcgrt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,709,083 - 4,719,152 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,710,024 - 4,718,997 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fcgrt
402 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:197
Count of miRNA genes:179
Interacting mature miRNAs:188
Transcripts:ENSMUST00000003512
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse

Markers in Region
D37874  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38745,093,107 - 45,093,200UniSTSGRCm38
MGSCv37752,348,477 - 52,348,570UniSTSGRCm37
Celera740,545,260 - 40,545,353UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS
cM Map723.1UniSTS
Whitehead/MRC_RH7560.62UniSTS
Fcgrt  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38745,101,958 - 45,102,591UniSTSGRCm38
MGSCv37752,357,328 - 52,357,961UniSTSGRCm37
Celera740,554,717 - 40,555,350UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.0UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001357117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY063885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D37873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D37874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D37903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D37905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D37907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D37909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D37911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D37913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L17022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  PQ136840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  PQ136841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  PQ136842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  PQ136843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000003512   ⟹   ENSMUSP00000003512
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,742,414 - 44,753,275 (-)Ensembl
GRCm38.p6 Ensembl745,092,990 - 45,103,851 (-)Ensembl
Ensembl Acc Id: ENSMUST00000209830   ⟹   ENSMUSP00000147757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,751,975 - 44,752,510 (-)Ensembl
GRCm38.p6 Ensembl745,102,551 - 45,103,086 (-)Ensembl
Ensembl Acc Id: ENSMUST00000210642   ⟹   ENSMUSP00000147496
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,742,488 - 44,753,169 (-)Ensembl
GRCm38.p6 Ensembl745,093,064 - 45,103,745 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211085   ⟹   ENSMUSP00000147969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,751,394 - 44,753,168 (-)Ensembl
GRCm38.p6 Ensembl745,101,970 - 45,103,744 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,752,259 - 44,753,219 (-)Ensembl
GRCm38.p6 Ensembl745,102,835 - 45,103,795 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211668
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,744,432 - 44,753,179 (-)Ensembl
GRCm38.p6 Ensembl745,095,008 - 45,103,755 (-)Ensembl
RefSeq Acc Id: NM_001357117   ⟹   NP_001344046
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,742,417 - 44,753,246 (-)NCBI
GRCm38745,092,993 - 45,103,822 (-)NCBI
Sequence:
RefSeq Acc Id: NM_010189   ⟹   NP_034319
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,742,417 - 44,753,246 (-)NCBI
GRCm38745,092,993 - 45,103,822 (-)NCBI
MGSCv37752,348,363 - 52,359,192 (-)RGD
Celera740,545,146 - 40,556,581 (-)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_034319   ⟸   NM_010189
- Peptide Label: isoform 1 precursor
- UniProtKB: Q9QUR0 (UniProtKB/Swiss-Prot),   Q9R2A5 (UniProtKB/Swiss-Prot),   Q61559 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001344046   ⟸   NM_001357117
- Peptide Label: isoform 2 precursor
- UniProtKB: Q6PKB0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000147969   ⟸   ENSMUST00000211085
Ensembl Acc Id: ENSMUSP00000147496   ⟸   ENSMUST00000210642
Ensembl Acc Id: ENSMUSP00000003512   ⟸   ENSMUST00000003512
Ensembl Acc Id: ENSMUSP00000147757   ⟸   ENSMUST00000209830
Protein Domains
Ig-like   Ig-like C1-type   MHC class I-like antigen recognition-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q61559-F1-model_v2 AlphaFold Q61559 1-365 view protein structure

Promoters
RGD ID:8663955
Promoter ID:EPDNEW_M10008
Type:initiation region
Name:Fcgrt_2
Description:Mus musculus Fc receptor, IgG, alpha chain transporter , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10009  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38745,103,215 - 45,103,275EPDNEW
RGD ID:8663957
Promoter ID:EPDNEW_M10009
Type:initiation region
Name:Fcgrt_1
Description:Mus musculus Fc receptor, IgG, alpha chain transporter , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10008  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38745,103,755 - 45,103,815EPDNEW
RGD ID:6848133
Promoter ID:MM_ACW:44486
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Spleen
Transcripts:FCGRT.DSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,358,071 - 52,358,571 (-)MPROMDB
RGD ID:6841099
Promoter ID:MM_KWN:50344
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_010189,   UC009GTD.1,   UC009GTE.1,   UC009GTG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,358,391 - 52,359,457 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:103017 AgrOrtholog
Ensembl Genes ENSMUSG00000003420 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000003512 ENTREZGENE
  ENSMUST00000003512.9 UniProtKB/Swiss-Prot
  ENSMUST00000209830.2 UniProtKB/TrEMBL
  ENSMUST00000210642 ENTREZGENE
  ENSMUST00000210642.2 UniProtKB/TrEMBL
  ENSMUST00000211085.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC_class-I_related UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
KEGG Report mmu:14132 UniProtKB/Swiss-Prot
MGD MGI:103017 ENTREZGENE
NCBI Gene 14132 ENTREZGENE
PANTHER IGG RECEPTOR FCRN LARGE SUBUNIT P51 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam C1-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fcgrt PhenoGen
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_MHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1B0GS17_MOUSE UniProtKB/TrEMBL
  A0A1B0GSK0_MOUSE UniProtKB/TrEMBL
  FCGRN_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q6PKB0 ENTREZGENE, UniProtKB/TrEMBL
  Q9QUR0 ENTREZGENE
  Q9R2A5 ENTREZGENE
UniProt Secondary Q9QUR0 UniProtKB/Swiss-Prot
  Q9R2A5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-09-29 Fcgrt  Fc fragment of IgG receptor and transporter  Fcgrt  Fc receptor, IgG, alpha chain transporter  Symbol and/or name change 5135510 APPROVED