Erf (Ets2 repressor factor) - Rat Genome Database

Name: Erf
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Erf (Ets2 repressor factor) Rattus norvegicus

Analyze

Symbol:

Erf

Name:

Ets2 repressor factor

RGD ID:

1311991

Description:

Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chorio-allantoic fusion; ectodermal cell differentiation; and trophoblast giant cell differentiation. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in craniosynostosis. Orthologous to human ERF (ETS2 repressor factor); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ETS domain-containing transcription factor ERF; LOC292721

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ERF (ETS2 repressor factor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Erf (Ets2 repressor factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Erf (ETS2 repressor factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ERF (ETS2 repressor factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ERF (ETS2 repressor factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Erf (ETS2 repressor factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ERF (ETS2 repressor factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ERF (ETS2 repressor factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Erf (ETS2 repressor factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TAF15 (TATA-box binding protein associated factor 15)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ERF (ETS2 repressor factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Erf (Ets2 repressor factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	erf (Ets2 repressor factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	erfl3 (Ets2 repressor factor like 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	erf	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	80,829,935 - 80,838,388 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	80,829,935 - 80,838,388 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	86,222,152 - 86,230,605 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	94,773,296 - 94,781,750 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	87,977,929 - 87,986,382 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	82,112,449 - 82,120,902 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	82,112,449 - 82,120,902 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	83,378,953 - 83,382,937 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	80,518,385 - 80,527,142 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	80,597,483 - 80,605,113 (-)	NCBI
Celera	1	75,273,608 - 75,281,418 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Arnold-Chiari Malformation (ISO)

atrial heart septal defect (ISO)

brain disease (ISO)

Carpenter Syndrome 2 (ISO)

CHITAYAT SYNDROME (ISO)

congenital hypoplastic anemia (ISO)

Craniofacial Abnormalities (ISO)

craniosynostosis (ISO)

Craniosynostosis 4 (ISO)

Craniosynostosis Syndrome, Autosomal Recessive (ISO)

Diamond-Blackfan anemia (ISO)

genetic disease (ISO)

Language Development Disorders (ISO)

Macrocephaly (ISO)

maple syrup urine disease (ISO)

multiple myeloma (ISO)

Neurodevelopmental Disorders (ISO)

Prostatic Neoplasms (ISO)

schizophrenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

8-Br-cAMP (ISO)

aflatoxin B1 (EXP)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

butanal (ISO)

cadmium atom (ISO)

caffeine (ISO)

calciol (ISO)

chlorpyrifos (EXP,ISO)

cis-caffeic acid (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

dibutyl phthalate (EXP)

dieldrin (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

folic acid (ISO)

furan (EXP)

glyphosate (EXP)

hydrazine (ISO)

hydrogen peroxide (ISO)

imidacloprid (EXP)

Licochalcone B (ISO)

nitrofen (EXP)

paracetamol (EXP,ISO)

propiconazole (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sulforaphane (EXP)

sunitinib (ISO)

temozolomide (ISO)

thapsigargin (ISO)

theophylline (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trans-caffeic acid (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chorio-allantoic fusion (ISO)

ectodermal cell differentiation (ISO)

in utero embryonic development (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

regulation of transcription by RNA polymerase II (IBA)

trophoblast giant cell differentiation (ISO)

Cellular Component

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

protein binding (ISO)

sequence-specific DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7588608	PMID:17502352	PMID:23332764

Genomics

Comparative Map Data

Erf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	80,829,935 - 80,838,388 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	80,829,935 - 80,838,388 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	86,222,152 - 86,230,605 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	94,773,296 - 94,781,750 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	87,977,929 - 87,986,382 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	82,112,449 - 82,120,902 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	82,112,449 - 82,120,902 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	83,378,953 - 83,382,937 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	80,518,385 - 80,527,142 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	80,597,483 - 80,605,113 (-)	NCBI
Celera	1	75,273,608 - 75,281,418 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

ERF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	42,247,569 - 42,255,128 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	42,247,569 - 42,255,128 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	42,751,721 - 42,759,280 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	47,443,557 - 47,451,149 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	47,443,561 - 47,451,113	NCBI
Celera	19	39,552,513 - 39,560,105 (-)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	39,182,130 - 39,189,922 (-)	NCBI		HuRef
CHM1_1	19	42,753,399 - 42,760,960 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	45,066,943 - 45,074,502 (-)	NCBI		T2T-CHM13v2.0

Erf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	24,941,985 - 24,950,522 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	24,941,986 - 24,950,186 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	25,242,560 - 25,251,104 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	25,242,561 - 25,250,761 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	26,027,579 - 26,035,777 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	24,951,320 - 24,959,425 (-)	NCBI		MGSCv36	mm8
Celera	7	19,858,364 - 19,866,638 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	13.73	NCBI

Erf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955555	654,414 - 665,277 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955555	654,945 - 661,097 (+)	NCBI	ChiLan1.0	ChiLan1.0

ERF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	19	50,221,637 - 50,229,198 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	39,135,757 - 39,143,343 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	47,728,192 - 47,735,808 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	47,728,192 - 47,735,808 (-)	Ensembl	panpan1.1		panPan2

ERF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	112,117,338 - 112,124,464 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	112,117,141 - 112,124,077 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	111,539,322 - 111,550,990 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	112,725,792 - 112,737,462 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	112,729,426 - 112,736,627 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	112,279,998 - 112,291,665 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	111,915,949 - 111,927,016 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	112,842,484 - 112,854,156 (+)	NCBI		UU_Cfam_GSD_1.0

Erf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	15,908,148 - 15,915,806 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	255,407 - 263,179 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936706	255,479 - 263,154 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ERF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	49,678,888 - 49,685,538 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	49,678,858 - 49,686,422 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	45,597,124 - 45,604,058 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ERF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	36,452,604 - 36,460,188 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	36,452,577 - 36,460,122 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	14,696,845 - 14,704,450 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Erf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624907	499,883 - 507,629 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624907	499,913 - 506,719 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Erf
18 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	290
Count of miRNA genes:	175
Interacting mature miRNAs:	222
Transcripts:	ENSRNOT00000027684
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49361465	82174945	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53895117	82174945	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53895117	82174945	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	56732668	98773277	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	56949932	101949932	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	57336763	151090257	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	65789093	115540829	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	66023617	118608521	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	72197680	90508767	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	77494165	122494165	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	77857876	122857876	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	77876254	106047988	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	78350581	123350581	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	78430536	123430536	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	78430754	91209302	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	78479925	123479925	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	80592172	125592172	Rat

Markers in Region

RH79119

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	80,830,948 - 80,831,081 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	82,113,463 - 82,113,595	NCBI	Rnor6.0
Rnor_5.0	1	83,379,967 - 83,380,099	UniSTS	Rnor5.0
RGSC_v3.4	1	80,519,399 - 80,519,531	UniSTS	RGSC3.4
Celera	1	75,274,622 - 75,274,754	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	28	23	23	1	23			53	30	35	7
Low	1	15	34	18	18	18	8	11	21	5	6	4	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001170335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008758917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000027684 ⟹ ENSRNOP00000027684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	80,829,935 - 80,838,388 (-)	Ensembl
Rnor_6.0 Ensembl	1	82,112,449 - 82,120,902 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099169 ⟹ ENSRNOP00000093732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	80,833,134 - 80,838,388 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112122 ⟹ ENSRNOP00000089762

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	80,829,935 - 80,834,794 (-)	Ensembl

RefSeq Acc Id:

NM_001170335 ⟹ NP_001163806

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	80,829,935 - 80,838,388 (-)	NCBI
Rnor_6.0	1	82,112,449 - 82,120,902 (-)	NCBI
Rnor_5.0	1	83,378,953 - 83,382,937 (-)	NCBI
RGSC_v3.4	1	80,518,385 - 80,527,142 (-)	RGD
Celera	1	75,273,608 - 75,281,418 (-)	RGD

Sequence:

show sequence

GATATTAACCCGGGAGGCGGCGGCGGGGAGGGGAGAGGCTCTGAGAGGCGAGGCCGGGTGCGGC
GGCGAGGGCGTCCCAACGGGCGCGGGACGGGACGGGGCAACGCGGGCGCCTGGAGCAGCGGCCC
GGAGTCGGGGCGCCTTGCCCCGGGCCCCCCAGCATGAAGACCCCAGCGGACACAGGGTTTGCCT
TCCCAGATTGGGCCTACAAGCCGGAGTCATCCCCTGGCTCGAGGCAGATCCAGCTGTGGCACTT
TATCTTGGAGCTGCTTCGGAAAGAGGAGTACCAGGGCGTCATCGCCTGGCAGGGAGACTACGGG
GAATTTGTCATCAAGGACCCTGATGAGGTGGCCCGACTCTGGGGGGTCCGCAAGTGCAAACCCC
AGATGAACTACGACAAGCTGAGCCGGGCCCTGCGCTATTACTATAACAAGCGCATTCTGCACAA
GACCAAGGGGAAACGGTTCACCTACAAGTTCAACTTCAACAAACTGGTGCTGGTTAATTACCCT
TTCATCGATGTGGGGCTGGCCGGGGGCGCTGTTCCCCAGAGTGCCCCTCCAGTGCCATCGGGCG
GCAGCCATTTCCGCTTCCCTCCTTCGACGCCCTCCGAGGTGCTGTCCCCCACCGAGGATCCCCG
CTCTCCACCAGCTTGTTCTTCATCGTCCTCTTCTCTCTTCTCCGCTGTGGTTGCTCGACGCCTG
GGCCGAGGCTCTGTCAGCGACTGCAGTGATGGCACCTCAGAGCTGGAGGAGCCTCTGGGGGAGG
ACCCCAGGGCACGACCACCTGGCCCTCCGGAGCTGGGTGCCTTCCGAGGGCCCCCGCTGGCCCG
CCTCCCACATGATCCTGGTGTCTTCCGTGTCTATCCTCGGCCTCGGGGTGGTCCTGAACCCCTA
AGTCCCTTCCCTGTGTCACCTTTGGCTGGGCCTGGCTCCCTTCTACCCCCTCAACTCTCCCCAG
CTCTGCCCATGACTCCCACCCACCTGGCCTACACACCCTCACCCACGCTGAGTCCTATGTACCC
CAGTGGTGGCGGGGGCCCTAGTGGCTCAGGGGGGGGTTCCCACTTCTCCTTCAGTCCGGAGGAC
ATGAAACGGTACCTGCAGGCCCACACCCAAAGCGTCTACAACTACCACCTCAGTCCCCGCGCCT
TCCTGCACTATCCAGGGCTGGTGGTGCCCCAGCCTCAGCGCCCTGACAAGTGCCCACTGCCGCC
CATGGCACCGGAGACCCCGCCGGTTCCCTCCTCAGCCTCGTCTTCCTCTTCTTCCTCTTCATCC
CCGTTCAAGTTTAAGCTGCAGCCACCCCCGCTAGGACGCCGGCAGCGGGCAGCTGGAGAGAAGG
CTCCAGGGGGCACTGACAAGAGCAGTGATGGTAGTGGCTCTGGTGGGCTGGCCGAGGGGGCAGG
CGCATTAGCCCCCCCACCGCCACCACCACCCCAGATTAAGGTGGAACCCATCTCAGAGGGCGAG
TCGGAGGAGGTGGAGGTGACTGACATCAGTGACGAAGATGAGGAAGATGGGGAGGTGTTCAAGA
CCCCCCGTGCCCCACCCGCTCCCCCCAAGCCAGAGCCTGGAGAGGCACCAGGGGCAGCCCAGTG
CATGCCTCTTAAACTGCGCTTTAAAAGGCGCTGGAGTGAAGACTGTCGCCTGGAGGGGGGCGGG
TGCCTCTCTGGGGGCCCTGAGGATGAGGGTGAGGACAAGAAGGTGCGTGGGGACATGGGCCCTG
GGGAGCCTGGGGGACCCCTCACTCCTCGGCGAGTGAGCTCTGATCTCCAGCACGCTACAGCCCA
GCTCTCCCTGGAGCACCGAGATTCCTGAGAGCCGTGGGCAAGGGCCCGGTGCGCCACCCCCAAC
TACCCCACTCCCCCTGAGCTTTTGCTGCCTTAACCCCCCCCCCCCCAGCCCTGGAGGTGAGGGC
AGCTCTCTTTAGTCTCCTCCCTGCCTCCTCCCTTTCTCCTCCCCCACATTTTGTATAAAACTTT
GAATTTTTTTTTTAATGGTAGGGTGGGTGGGTGCCCAGAGCTGGGGGCTAATCTCCTCTTCTCT
GGGTTTCTAAGTTCTGGGCAAAGTGGTGGTGGGGGGTGGGAGGGGGGGTCTTAAAGGGGGGGCA
CCTCCATTCTGGGGATTTCTATTTGAACAGAGGCTTTGGCCTTAAAACCCAGGAACTTTTTTAT
TACAATCGTAGGAAGTAAAGCCTTGTCTCCCTCCCTCTTCTCTGCCTCTTACCTCGTCCTGCCT
CTCCCCCCCTCGTGCCCCTCCCCCAGCCCTAACCCTGCCTTCCTTGCCCCTCCAGGGGCTGTGA
GTGCCTGGGTTTCTTATACCCCATAAGGTTGCAGCAGAGGCAGGAGGGACAAATTTTATAAACC
AAAAATTCTGTGGGGGGTGGTGGGGTGGGGGGCAGAGGAAGGTGAGGGGTGCCGCCTATGGGCC
ACAAATCTCTACAAGTGCCTGTTCCCTACACCACCCCAGTACTAGTCCAGTCCCTTCACACCCA
CTCCCAGCTGCTCCTAGGTCTGGCCCATGGGCAGGTGGGTCAAGGGACAGGAAGGGGGGGTCCC
TCAAAACCAAACTGGAAGCCCCTCTCTGCCTCCCAGCTGGGGCCCCAGGGGTGGGCTGGAGGGT
TTTGGTCAAGCCTTATTCTGTATTGGGAATGGAGGGTGGGGTGGGACATGAGGGGGCTGCTGGA
GAATGTATTCAAAACAATAAAACTTTGGACCTTTGCATGTGGTAATGCATCCTAGGTGCTGGGT
ACAGCCACAGTATCAACACAGACTTGGTTTGCTTCTGGACAGGTCTAGACACCTGCTTCTATCT
GTGGCCAGAAGGTCTGACTCCACCTGAACAGGTCAGCTAGGCCTGGGGAGTTACTGGCCTACTT
TCAGATGTCACAAACCTCGGAGCGGATGATTAAGGTTTCTGGCTTTCTCTAGTCTTGTGTTTCC
TTGACTGGTTCCTTATCTCATCTGCCTCTTGGACCCTTAACATGACCCTGCTGTTCCTGGCTCT
CCTACCTGAATCGCATTTGCCCTCCAGCTCTGGCTGCTAAGCCACACCCGTCAGGGCCCCAGGG
AAGGAAGGGTCGTGTATTTTGGACCAAGGCCAGCTTCTTGCTCATCTCCCTCAAAATGTACGGA
AGAGGCTTTAGTGGTCCACACCTGTAATCCCCCCAGCACTGGTGTTAGGAAGTTTAAGGTTATG
GCCTGCCTGGACCATGTAAAAGGGAAATGTGTGATCCTGCTTCGGAGCCTTGGACCCGGAGGCC
TGGAGTGTCTTGAAATGCAGCCCTTGGGCTGGAGCGCCGCTCAGCTCTGTGTTCAAGGGTGCTT
CCACTCTTGAGAGAACCTCAGTTCATTTCAGAGTACTTTACGTGGGGTGGCTCATGACAGTTGG
CACCCCCAGTTCCAGGGGATCCAGCTTCTGGCACCCACACAGAATTGGCATACATTTACTCAGA
CACATTAACAAAAATATTTTAAGAAATTTATACCTATGCATATGAACGTTTGGTCCGTATGCAT
ATCCATGTATCATGTGCTCTGTGCCCAAGATGGTCAGAAAAGGGCGTCGGATGTCCTGGAAGGA
CAGAAAGATGGTTTCGAACCGACATGTGGGTGCTGGGAACCAACCCTGGGTCATCTGCAAGAGC
AGCAAGTGCTCTTAGCCACCAAGCCATCTTTCCAGCCCCAATAAAACTTATGTCTTAAAGGAA

hide sequence

RefSeq Acc Id:

XM_008758917 ⟹ XP_008757139

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	80,830,923 - 80,836,959 (-)	NCBI
Rnor_6.0	1	82,112,449 - 82,119,480 (-)	NCBI

Sequence:

show sequence

GGGGTGCGCAGTGCCGTAGGGTCAGTCACGTGCGTCCCACTTAGTCCCCCACTCCCGGACTCTC
ACAGGCTCCGGGGCTGCGGGGCCCTGGGGGCAGCAGGAGCCTCGCCTCACCCGGGGAGGGGACC
AAGGCGCTCAGACAACCCCGCCTTGTCTTCCCTCTATGTTACGGGCCTTGGCCTGACGGGACCT
GTAAGGCCACTGCAACCCTGTCTGGGGTCCCGGTCATGTGTAGATTCTCATGGGAAGGCGGGGG
ACCAGAACGGCCTCGAGGTCGGTTTGTTTCTCCTGACTGCCGGCCACTGCTCGCCCTTCCATCC
GATCCTCCATCCCGGCGTTTCTCTGCTCCGCCGTGGCTGTTTCCCACTTCCTGTTTTCTTCCCG
GCTCTGGCGCCATCGAGGTCTGCCTGGAGTGGGGGAGGTGTTGAGGCCCCCCGGGAGGCAGACG
TATTTTTCCTCAACCACCACCCCTCCTATCTGACCCCTATATTCCCATAAAAAAGTTTAGGCAG
TCATGTTGAGTTGGGGATTGTTTCCCAGAACTTATGCCCCGACCCAGGCTTGCACAGTCTGGGA
TATCCAGGTGTGCCTTCTGGGACCCAGCCATCATAGCCCTTCCTGTCTGCAGCCACCTCTACAC
CCTGTCTGCGTTTCTGGAGCCCTCTTTCAGTGTAGCTGCTTTCTTCCAGCCTCTCTGGACCCCC
CATGCTGGAGAGGTCTTGCACCCTCAAGCTTTCTTGCTGCAGAGCTGGTGTTTCCGTGATTTAA
GCACGTGGACCCGTATACAACACACACATGGTCTCCTTGCCCGTGCCTGGCTCCTGGCTCCAAG
GCCTGGGGAACAGAGCCCCATTGAGACACCCTGACGTCACCCCCACTCCGTCCCCTCCCCAAAG
CTGGGAACAGGCCCTCGTGTATGCTGTGTCCGATGAGGAAAGCCGGGTTTGCCTTCCCAGATTG
GGCCTACAAGCCGGAGTCATCCCCTGGCTCGAGGCAGATCCAGCTGTGGCACTTTATCTTGGAG
CTGCTTCGGAAAGAGGAGTACCAGGGCGTCATCGCCTGGCAGGGAGACTACGGGGAATTTGTCA
TCAAGGACCCTGATGAGGTGGCCCGACTCTGGGGGGTCCGCAAGTGCAAACCCCAGATGAACTA
CGACAAGCTGAGCCGGGCCCTGCGCTATTACTATAACAAGCGCATTCTGCACAAGACCAAGGGG
AAACGGTTCACCTACAAGTTCAACTTCAACAAACTGGTGCTGGTTAATTACCCTTTCATCGATG
TGGGGCTGGCCGGGGGCGCTGTTCCCCAGAGTGCCCCTCCAGTGCCATCGGGCGGCAGCCATTT
CCGCTTCCCTCCTTCGACGCCCTCCGAGGTGCTGTCCCCCACCGAGGATCCCCGCTCTCCACCA
GCTTGTTCTTCATCGTCCTCTTCTCTCTTCTCCGCTGTGGTTGCTCGACGCCTGGGCCGAGGCT
CTGTCAGCGACTGCAGTGATGGCACCTCAGAGCTGGAGGAGCCTCTGGGGGAGGACCCCAGGGC
ACGACCACCTGGCCCTCCGGAGCTGGGTGCCTTCCGAGGGCCCCCGCTGGCCCGCCTCCCACAT
GATCCTGGTGTCTTCCGTGTCTATCCTCGGCCTCGGGGTGGTCCTGAACCCCTAAGTCCCTTCC
CTGTGTCACCTTTGGCTGGGCCTGGCTCCCTTCTACCCCCTCAACTCTCCCCAGCTCTGCCCAT
GACTCCCACCCACCTGGCCTACACACCCTCACCCACGCTGAGTCCTATGTACCCCAGTGGTGGC
GGGGGCCCTAGTGGCTCAGGGGGGGGTTCCCACTTCTCCTTCAGTCCGGAGGACATGAAACGGT
ACCTGCAGGCCCACACCCAAAGCGTCTACAACTACCACCTCAGTCCCCGCGCCTTCCTGCACTA
TCCAGGGCTGGTGGTGCCCCAGCCTCAGCGCCCTGACAAGTGCCCACTGCCGCCCATGGCACCG
GAGACCCCGCCGGTTCCCTCCTCAGCCTCGTCTTCCTCTTCTTCCTCTTCATCCCCGTTCAAGT
TTAAGCTGCAGCCACCCCCGCTAGGACGCCGGCAGCGGGCAGCTGGAGAGAAGGCTCCAGGGGG
CACTGACAAGAGCAGTGATGGTAGTGGCTCTGGTGGGCTGGCCGAGGGGGCAGGCGCATTAGCC
CCCCCACCGCCACCACCACCCCAGATTAAGGTGGAACCCATCTCAGAGGGCGAGTCGGAGGAGG
TGGAGGTGACTGACATCAGTGACGAAGATGAGGAAGATGGGGAGGTGTTCAAGACCCCCCGTGC
CCCACCCGCTCCCCCCAAGCCAGAGCCTGGAGAGGCACCAGGGGCAGCCCAGTGCATGCCTCTT
AAACTGCGCTTTAAAAGGCGCTGGAGTGAAGACTGTCGCCTGGAGGGGGGCGGGTGCCTCTCTG
GGGGCCCTGAGGATGAGGGTGAGGACAAGAAGGTGCGTGGGGACATGGGCCCTGGGGAGCCTGG
GGGACCCCTCACTCCTCGGCGAGTGAGCTCTGATCTCCAGCACGCTACAGCCCAGCTCTCCCTG
GAGCACCGAGATTCCTGAGAGCCGTGGGCAAGGGCCCGGTGCGCCACCCCCAACTACCCCACTC
CCCCTGAGCTTTTGCTGCCTTAACCCCCCCCCCCCCAGCCCTGGAGGTGAGGGCAGCTCTCTTT
AGTCTCCTCCCTGCCTCCTCCCTTTCTCCTCCCCCACATTTTGTATAAAACTTTGAATTTTTTT
TTTAATGGTAGGGTGGGTGGGTGCCCAGAGCTGGGGGCTAATCTCCTCTTCTCTGGGTTTCTAA
GTTCTGGGCAAAGTGGTGGTGGGGGGTGGGAGGGGGGGTCTTAAAGGGGGGGCACCTCCATTCT
GGGGATTTCTATTTGAACAGAGGCTTTGGCCTTAAAACCCAGGAACTTTTTTATTACAATCGTA
GGAAGTAAAGCCTTGTCTCCCTCCCTCTTCTCTGCCTCTTACCTCGTCCTGCCTCTCCCCCCCT
CGTGCCCCTCCCCCAGCCCTAACCCTGCCTTCCTTGCCCCTCCAGGGGCTGTGAGTGCCTGGGT
TTCTTATACCCCATAAGGTTGCAGCAGAGGCAGGAGGGACAAATTTTATAAACCAAAAATTCTG
TGGGGGGTGGTGGGGTGGGGGGCAGAGGAAGGTGAGGGGTGCCGCCTATGGGCCACAAATCTCT
ACAAGTGCCTGTTCCCTACACCACCCCAGTACTAGTCCAGTCCCTTCACACCCACTCCCAGCTG
CTCCTAGGTCTGGCCCATGGGCAGGTGGGTCAAGGGACAGGAAGGGGGGGTCCCTCAAAACCAA
ACTGGAAGCCCCTCTCTGCCTCCCAGCTGGGGCCCCAGGGGTGGGCTGGAGGGTTTTGGTCAAG
CCTTATTCTGTATTGGGAATGGAGGGTGGGGTGGGACATGAGGGGGCTGCTGGAGAATGTATTC
AAAACAATAAAACTTTGGACCTTTGCATGTGGTAATGCATCCTAGGTGCTGGGTACAGCCACAG
TATCAACACAGACTTGGTTTGCTTCTGGACAGGTCTAGACACCTGCTTCTATCTGTGGCCAGAA
GGTCTGACTCCACCTGAACAGGTCAGCTAGGCCTGGGGAGTTACTGGCCTACTTTCAGATGTCA
CAAACCTCGGAGCGGATGATTAAGGTTTCTGGCTTTCTCTAGTCTTGTGTTTCCTTGACTGGTT
CCTTATCTCATCTGCCTCTTGGACCCTTAACATGACCCTGCTGTTCCTGGCTCTCCTACCTGAA
TCGCATTTGCCCTCCAGCTCTGGCTGCTAAGCCACACCCGTCAGGGCCCCAGGGAAGGAAGGGT
CGTGTATTTTGGACCAAGGCCAGCTTCTTGCTCATCTCCCTCAAAATGTACGGAAGAGGCTTTA
GTGGTCCACACCTGTAATCCCCCCAGCACTGGTGTTAGGAAGTTTAAGGTTATGGCCTGCCTGG
ACCATGTAAAAGGGAAATGTGTGATCCTGCTTCGGAGCCTTGGACCCGGAGGCCTGGAGTGTCT
TGAAATGCAGCCCTTGGGCTGGAGCGCCGCTCAGCTCTGTGTTCAAGGGTGCTTCCACTCTTGA
GAGAACCTCAGTTCATTTCAGAGTACTTTACGTGGGGTGGCTCATGACAGTTGGCACCCCCAGT
TCCAGGGGATCCAGCTTCTGGCACCCACACAGAATTGGCATACATTTACTCAGACACATTAACA
AAAATATTTTAAGAAATTTATACCTATGCATATGAACGTTTGGTCCGTATGCATATCCATGTAT
CATGTGCTCTGTGCCCAAGATGGTCAGAAAAGGGCGTCGGATGTCCTGGAAGGACAGAAAGATG
GTTTCGAACCGACATGTGGGTGCTGGGAACCAACCCTGGGTCATCTGCAAGAGCAGCAAGTGCT
CTTAGCCACCAAGCCATCTTTCCAGCCCCAATAAAACTTATGTCTTAAAGGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001163806	(Get FASTA)	NCBI Sequence Viewer
	XP_008757139	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001163806 ⟸ NM_001170335

- UniProtKB:

D3ZJW0 (UniProtKB/TrEMBL), A0A8I6A9F0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKTPADTGFAFPDWAYKPESSPGSRQIQLWHFILELLRKEEYQGVIAWQGDYGEFVIKDPDEVA
RLWGVRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFNKLVLVNYPFIDVGLAGGAV
PQSAPPVPSGGSHFRFPPSTPSEVLSPTEDPRSPPACSSSSSSLFSAVVARRLGRGSVSDCSDG
TSELEEPLGEDPRARPPGPPELGAFRGPPLARLPHDPGVFRVYPRPRGGPEPLSPFPVSPLAGP
GSLLPPQLSPALPMTPTHLAYTPSPTLSPMYPSGGGGPSGSGGGSHFSFSPEDMKRYLQAHTQS
VYNYHLSPRAFLHYPGLVVPQPQRPDKCPLPPMAPETPPVPSSASSSSSSSSSPFKFKLQPPPL
GRRQRAAGEKAPGGTDKSSDGSGSGGLAEGAGALAPPPPPPPQIKVEPISEGESEEVEVTDISD
EDEEDGEVFKTPRAPPAPPKPEPGEAPGAAQCMPLKLRFKRRWSEDCRLEGGGCLSGGPEDEGE
DKKVRGDMGPGEPGGPLTPRRVSSDLQHATAQLSLEHRDS

hide sequence

RefSeq Acc Id:	XP_008757139 ⟸ XM_008758917
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A9F0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLCPMRKAGFAFPDWAYKPESSPGSRQIQLWHFILELLRKEEYQGVIAWQGDYGEFVIKDPDEV ARLWGVRKCKPQMNYDKLSRALRYYYNKRILHKTKGKRFTYKFNFNKLVLVNYPFIDVGLAGGA VPQSAPPVPSGGSHFRFPPSTPSEVLSPTEDPRSPPACSSSSSSLFSAVVARRLGRGSVSDCSD GTSELEEPLGEDPRARPPGPPELGAFRGPPLARLPHDPGVFRVYPRPRGGPEPLSPFPVSPLAG PGSLLPPQLSPALPMTPTHLAYTPSPTLSPMYPSGGGGPSGSGGGSHFSFSPEDMKRYLQAHTQ SVYNYHLSPRAFLHYPGLVVPQPQRPDKCPLPPMAPETPPVPSSASSSSSSSSSPFKFKLQPPP LGRRQRAAGEKAPGGTDKSSDGSGSGGLAEGAGALAPPPPPPPQIKVEPISEGESEEVEVTDIS DEDEEDGEVFKTPRAPPAPPKPEPGEAPGAAQCMPLKLRFKRRWSEDCRLEGGGCLSGGPEDEG EDKKVRGDMGPGEPGGPLTPRRVSSDLQHATAQLSLEHRDS hide sequence

RefSeq Acc Id:

ENSRNOP00000027684 ⟸ ENSRNOT00000027684

RefSeq Acc Id:

ENSRNOP00000093732 ⟸ ENSRNOT00000099169

RefSeq Acc Id:

ENSRNOP00000089762 ⟸ ENSRNOT00000112122

Protein Domains

ETS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZJW0-F1-model_v2	AlphaFold	D3ZJW0	1-552	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311991	AgrOrtholog
BioCyc Gene	G2FUF-60395	BioCyc
Ensembl Genes	ENSRNOG00000020426	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000027684	ENTREZGENE
	ENSRNOP00000027684.6	UniProtKB/TrEMBL
	ENSRNOP00000089762.1	UniProtKB/TrEMBL
	ENSRNOP00000093732.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027684	ENTREZGENE
	ENSRNOT00000027684.8	UniProtKB/TrEMBL
	ENSRNOT00000099169.1	UniProtKB/TrEMBL
	ENSRNOT00000112122.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	Ets	UniProtKB/TrEMBL
	ETS_fam	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
KEGG Report	rno:292721	UniProtKB/TrEMBL
NCBI Gene	292721	ENTREZGENE
PANTHER	PTHR11849	UniProtKB/TrEMBL
	PTHR11849:SF31	UniProtKB/TrEMBL
Pfam	Ets	UniProtKB/TrEMBL
PhenoGen	Erf	PhenoGen
PRINTS	ETSDOMAIN	UniProtKB/TrEMBL
PROSITE	ETS_DOMAIN_1	UniProtKB/TrEMBL
	ETS_DOMAIN_2	UniProtKB/TrEMBL
	ETS_DOMAIN_3	UniProtKB/TrEMBL
SMART	ETS	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A0A8I6A9F0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AKZ0_RAT	UniProtKB/TrEMBL
	D3ZJW0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Erf	Ets2 repressor factor	Erf_predicted	Ets2 repressor factor (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Erf_predicted	Ets2 repressor factor (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM