Rasip1 (Ras interacting protein 1)

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Gene: Rasip1 (Ras interacting protein 1) Rattus norvegicus

Analyze

Symbol:

Rasip1

Name:

Ras interacting protein 1

RGD ID:

1305291

Description:

Predicted to have GTPase binding activity and protein homodimerization activity. Predicted to be involved in several processes, including negative regulation of Rho protein signal transduction; negative regulation of cellular metabolic process; and tube morphogenesis. Predicted to localize to cell-cell junction and protein-containing complex. Orthologous to human RASIP1 (Ras interacting protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC292912; ras-interacting protein 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RASIP1 (Ras interacting protein 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Rasip1 (Ras interacting protein 1)	HGNC	Treefam, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Rasip1 (Ras interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RASIP1 (Ras interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RASIP1 (Ras interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rasip1 (Ras interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RASIP1 (Ras interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	RASIP1 (Ras interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rasip1 (Ras interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	RADIL (Rap associating with DIL domain)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	RASIP1 (Ras interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Rasip1 (Ras interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	rasip1 (Ras interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	96,097,078 - 96,109,564 (+)	NCBI
Rnor_6.0 Ensembl	1	101,610,773 - 101,621,646 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	101,609,209 - 101,621,648 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	102,687,843 - 102,700,428 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	96,097,668 - 96,108,543 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	96,174,114 - 96,186,654 (+)	NCBI
Celera	1	90,352,345 - 90,363,220 (+)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

8-Br-cAMP (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butan-1-ol (ISO)

butanal (ISO)

cadmium dichloride (EXP)

choline (ISO)

dibutyl phthalate (EXP)

endosulfan (EXP)

ethanol (ISO)

etoposide (ISO)

folic acid (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

isobutanol (ISO)

L-methionine (ISO)

paracetamol (ISO)

phenol red (ISO)

sunitinib (ISO)

tamoxifen (ISO)

trimellitic anhydride (ISO)

troglitazone (ISO)

vinclozolin (EXP)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (ISO)

branching morphogenesis of an epithelial tube (ISO)

negative regulation of autophagy (ISO)

negative regulation of membrane permeability (ISO)

negative regulation of Rho protein signal transduction (IBA,ISO)

negative regulation of Rho-dependent protein serine/threonine kinase activity (IBA,ISO)

positive regulation of integrin activation (ISO)

regulation of GTPase activity (IBA,ISO)

vasculogenesis (ISO)

Cellular Component

cell-cell junction (IBA,ISO)

protein-containing complex (ISO)

Molecular Function

GTPase binding (IBA,ISO)

protein binding (ISO)

protein homodimerization activity (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19272373	PMID:21396893	PMID:22354037	PMID:26780829

Genomics

Comparative Map Data

Rasip1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	96,097,078 - 96,109,564 (+)	NCBI
Rnor_6.0 Ensembl	1	101,610,773 - 101,621,646 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	101,609,209 - 101,621,648 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	102,687,843 - 102,700,428 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	96,097,668 - 96,108,543 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	96,174,114 - 96,186,654 (+)	NCBI
Celera	1	90,352,345 - 90,363,220 (+)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

RASIP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	48,720,585 - 48,740,610 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	48,720,585 - 48,740,610 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	49,223,842 - 49,243,867 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	19	49,223,842 - 49,244,136 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	53,915,654 - 53,935,782 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	19	53,915,653 - 53,935,782	NCBI
Celera	19	46,089,934 - 46,110,062 (-)	NCBI
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	45,603,007 - 45,622,781 (-)	NCBI		HuRef
CHM1_1	19	49,225,580 - 49,245,732 (-)	NCBI		CHM1_1

Rasip1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	45,276,961 - 45,288,516 (+)	NCBI	GRCm39		mm39
GRCm38	7	45,627,537 - 45,639,092 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	45,627,488 - 45,639,093 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	52,882,907 - 52,894,462 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	7	45,495,579 - 45,507,134 (+)	NCBI			mm8
Celera	7	41,089,079 - 41,100,635 (+)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI

Rasip1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955559	1,831,123 - 1,843,905 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955559	1,830,574 - 1,844,107 (+)	NCBI	ChiLan1.0	ChiLan1.0

RASIP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	54,311,649 - 54,318,585 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	19	45,720,179 - 45,740,131 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

RASIP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	1	107,581,424 - 107,597,682 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	1	107,583,169 - 107,597,683 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Rasip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936664	2,743,568 - 2,754,618 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RASIP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	54,058,759 - 54,076,473 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	54,058,748 - 54,072,415 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	49,806,097 - 49,819,876 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RASIP1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	41,970,704 - 41,997,951 (-)	NCBI
ChlSab1.1 Ensembl	6	41,991,176 - 41,996,155 (-)	Ensembl

Rasip1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624832	5,176,697 - 5,189,673 (+)	NCBI

Position Markers

AI853551

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	101,621,431 - 101,621,525	NCBI	Rnor6.0
Rnor_5.0	1	102,700,211 - 102,700,305	UniSTS	Rnor5.0
RGSC_v3.4	1	96,108,326 - 96,108,420	UniSTS	RGSC3.4
Celera	1	90,363,003 - 90,363,097	UniSTS
Cytogenetic Map	1	q22	UniSTS

RH128437

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	101,621,370 - 101,621,583	NCBI	Rnor6.0
Rnor_5.0	1	102,700,150 - 102,700,363	UniSTS	Rnor5.0
RGSC_v3.4	1	96,108,265 - 96,108,478	UniSTS	RGSC3.4
Celera	1	90,362,942 - 90,363,155	UniSTS
RH 3.4 Map	1	908.8	UniSTS
Cytogenetic Map	1	q22	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5655769	122614963	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	23406428	108057505	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	25951907	130917265	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34993530	173445086	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	35377692	217372257	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43579208	126240667	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43579208	126240667	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43579208	126240667	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	1	43579208	126240667	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43579208	126240667	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	49147799	156446783	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49578577	169852184	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49578693	217054291	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	57761301	104391981	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	58209327	103209327	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	58354072	161711996	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	64588516	125875986	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	66113339	122614963	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	79134941	113593716	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	79689548	124689548	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	82788437	239853971	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	83502376	128502376	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	83656882	126240667	Rat
61344	Bp29	Blood pressure QTL 29	7.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	85779320	130779320	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	85917265	130917265	Rat
4889494	Scort2	Serum corticosterone level QTL 2	4.2		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	86776571	131776571	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	88634585	106002500	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	90804143	161321256	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)	1	91093646	136093646	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	94201400	184846632	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	94201400	197187904	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	94225372	130917265	Rat
1300153	Bp171	Blood pressure QTL 171	3.37		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94364073	153076991	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	95304961	156446783	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	99983293	127203999	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	99983293	188289386	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	99983293	198656062	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	99983293	216213510	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	99983293	216325819	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	100131562	236763528	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	100354344	145354344	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	34
Count of miRNA genes:	31
Interacting mature miRNAs:	33
Transcripts:	ENSRNOT00000032535
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		37	6	6	8	6	1	3	66	26	30	11	1
Low	3	6	51	35	11	35	7	8	8	9	11		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006229030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC168876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000032535 ⟹ ENSRNOP00000034336

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	101,610,773 - 101,621,646 (+)	Ensembl

RefSeq Acc Id:

NM_001106261 ⟹ NP_001099731

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	96,098,689 - 96,109,564 (+)	NCBI
Rnor_6.0	1	101,610,773 - 101,621,648 (+)	NCBI
Rnor_5.0	1	102,687,843 - 102,700,428 (+)	NCBI
RGSC_v3.4	1	96,097,668 - 96,108,543 (+)	RGD
Celera	1	90,352,345 - 90,363,220 (+)	RGD

Sequence:

show sequence

GTCGGCTGGAGCAGGAGGCCTTCGGTGCTGCGGATGCAGACGGCACAAACGCCCCATCTTGGCG
GACCCAGAAGAATAGGTCTCGGGCAGCATCTGGCGGGGCAGCTTTGGCCAGTCCTGGTCCAGGA
TCAGGATCCGGGACCCCCACTGGGTCCGGGGGCAAGGAGCGATCTGAAAATCTGTCGCTGCGTC
GAAGTGTGTCTGAGCTGAGTCTACAGGGGCGGAGGCGGAGGCAGCAGGAACGCAGGCAGCAGGC
ACTTAGCATGGCCCCAGGGGCGGCTGATGCTCAGATGGTGCCAACGGACCCTGGAGACTTTGAC
CAGTTGACTCAGTGCCTCATTCAGGCACCCAGCAACCGTCCTTACTTCCTTCTGCTCCAGGGCT
ACCAGGATGCTCAGGACTTCGTGGTGTATGTGATGACACGAGAGCAGCACGTGTTCGGCCGAGG
TGGGCCCTCGTCGTCCCGCGGCGGATCCCCTGCCCCATATGTGGACACCTTCCTCAACGCCCCA
GACATCCTGCCTCGACATTGCACGGTGCGCGCGGGTCCTGAGCCCCCAGCTATGGTGCGCCCAT
CCCGGGGCGCCCCGGTCACACACAATGGCTGCCTTTTGCTGCGCGAGGCAGAGTTGCATCCCGG
AGACCTGCTAGGCCTGGGAGAGCATTTCCTGTTCATGTATAAGGACCCCCGCGCCGGGGGCTCT
GGTCCCGCTCGGCCACCCTGGCTGCCTGCGCGCCCCGGGGCCGCGCCACCGGGTCCGGGCTGGG
CCTTTTCTTGTCGCCTGTGTGGCCGTGGCCTGCAGGAGCGCGGCGAGGCACTGGCTGCCTACCT
GGACGGCCGCGAGCCGGTGCTGCGCTTTAGACCACGAGAGGAAGAGGCGCTGTTGGGAGAGATC
GTGCGCGCTGCAGCCTCGGGCGCAGGAGACCTGCCACCACTCGGGCCCGCCACTCTGCTGGCAC
TGTGTGTGCAGCATTCGGCGAGGGAGCTAGAGCTGGGCCACCTGCCTCGCTTGCTGGGCCGCCT
GGCCCGGCTCATCAAAGAGGCCGTTTGGGAAAAAATTAAAGAAATTGGAGACCGCCAGCCAGAG
AACCACCCAGAGGGAGTTCCTGAGGTGCCTCTGACCCCAGAGGCTGTGTCTGTGGAGCTGAGAC
CGCTCATACTGTGGATGGCCAATACCACAGAGCTTCTGAGCTTTGTTCAGGAGAAAGTGCTAGA
GATGGAGAAAGAGGCTGACCAGGAGGGCCTGTCCTCCGACCCTCAGCTCTGCAATGATTTGGAA
TTGTGTGACGAGGCCTTGGCCCTCCTGGATGAGGTCATCATGTGTACCTTCCAGCAGTCCGTCT
ACTACCTCACCAAGACTCTCTATTCGACACTGCCAGCTCTCCTGGACAGTAACCCTTTCACTGC
CGGGGCAGAGTTGCCGGGGCCTGGTGCAGAGCTGGAGGCCATGCCACCTGGACTCAGGCCTACC
CTGGGTGTGTTCCAGGCAGCTCTAGAACTGACCAGTCAGTGTGAGCTGCATCCCGACCTCGTGT
CCCAGACTTTTGGCTACTTGTTCTTCTTCTCCAATGCATCCCTTCTCAACTCGCTGATGGAACG
AGGTCAAGGCCGACCTTTCTATCAGTGGTCTCGAGCCGTCCAAATCAGAACCAACTTGGATCTC
GTTTTGGATTGGCTGCAGGGGGCCGGGCTGGGTGACATTGCCACTGAGTTCTTCCGGAAGCTCT
CCATTGCCGTGAACCTGCTGTGTGTACCCCGTACCTCCCTGCTCAAGGCTTCATGGAGCAGCTT
ACGGACTGACTACCCCACCTTGACTCCTGCTCAACTCCACCATCTCCTCAGCCACTACCAGTTG
GGTCCTGGCCGCGGACCACCACCAGCTTGGGACCCACCACCTGCAGAGCGAGATGCTGTGGACA
CAGGGGATATCTTTGAAAGTTTTTCCTCGCATCCTCCTCTCATCCTACCCCTGGGTAGCTCACG
CCTGCGCCTCACGGGCCCAGTGACAGATGATGCATTACACCGAGAACTACGCAGGCTCCGTCGC
CTCCTCTGGGATCTTGAGCAGCAGGAGCTGCCAGCCAATCATCGCCATGGACCGCCGGTGGCTG
CGACACCTTGAAAACCAATGACAAAGAAACGCGCGCAACTTGAAATTGCACCGGTTTTTAAGGG
AGCCCGCCTGGGTGTAGAGCATTTTGGGAGTTGTAGTTTTCCCCGAGCAGACCGCTGAGAGTTT
GACTTGTTGGGTTGGTAGATGATCGGACAATGGGAAGATGGGCTTGGGATGTGAATTCCAAGAA
GTAATAAAAGTATCTGTGGTATTGACAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006229030 ⟹ XP_006229092

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	96,097,078 - 96,109,564 (+)	NCBI
Rnor_6.0	1	101,609,209 - 101,621,648 (+)	NCBI
Rnor_5.0	1	102,687,843 - 102,700,428 (+)	NCBI

Sequence:

show sequence

ACCCAGTGCTGGGAGCTTGGGCAGAGGAAAACACTTTACAGAGGGATTGGGACTTAACGGAGGC
CAACGGCACCAGGGCCTCCGGGTGCTACAGGACCCGAAGCAGGGGCCATGCTATCTGGTGAACG
AAAGGAGGGCGGAAGCCCCCGCTTTGGGAAGCTCCATCTCCCTGTGGGCCTGTGGATCAATTCC
CCAAGGAAACAGCTCGCCAAACTGGGGCGGCGCTGGCCTAGCGCTGCCTCTGTCAAGTCCTCGT
CCTCCGACACGGGGAGCCGCAGCAGCGAGCCCCTGCCGCCACCGCCGCCGCCGCACGTGGAGCT
GCGGCGCGTTGGTGCGGTGAAGGCGGCGGGGGGCGCCTCGGGCAGCCGAGCCAAGCGCATCTCG
CAGCTGTTTCGGGGCTCGGGGGCCGGCGGCGCCGGGGGTCCTGGCACGCCCGGGGGCGCGCAGC
GCTGGGCCAGCGAGAAGAAGCTGCCTGAACTGGCGGCGGGTGTTGCTCCGGAGCCCCCGTTGCC
CACGCGCGCCGCGGTGCCCCCGGGAGTGCTCAAGATCTTCGCGGCCGGGCTGGCGTCGGGCGCC
AACTACAAGAGCGTGCTGGCTACGGAGCGATCTACCGCGCGCGAGCTGGTGGCGGAGGCGCTGG
AGCGCTACGGGTTGACGGGCGGCCGCGGAGCGGGCGACAGCGGCTGCGTGGACGCCTACGCGCT
TTGCGACGCTCTGGGCCGACCCGCCGCTGGCGTGGGCGGTGGCGAGTGGCGCGCGGAGCACCTG
CGGGTGCTGGCCGACGCCGAGCGCCCCCTGCTGGTGCAGGACCTGTGGCGCGCGCGGCCGGGCT
GGGCGCGGCGCTTTGAGCTGCGCGGCCGCGAGGAGGCCCGTCGGCTGGAGCAGGAGGCCTTCGG
TGCTGCGGATGCAGACGGCACAAACGCCCCATCTTGGCGGACCCAGAAGAATAGGTCTCGGGCA
GCATCTGGCGGGGCAGCTTTGGCCAGTCCTGGTCCAGGATCAGGATCCGGGACCCCCACTGGGT
CCGGGGGCAAGGAGCGATCTGAAAATCTGTCGCTGCGTCGAAGTGTGTCTGAGCTGAGTCTACA
GGGGCGGAGGCGGAGGCAGCAGGAACGCAGGCAGCAGGCACTTAGCATGGCCCCAGGGGCGGCT
GATGCTCAGATGGTGCCAACGGACCCTGGAGACTTTGACCAGTTGACTCAGTGCCTCATTCAGG
CACCCAGCAACCGTCCTTACTTCCTTCTGCTCCAGGGCTACCAGGATGCTCAGGACTTCGTGGT
GTATGTGATGACACGAGAGCAGCACGTGTTCGGCCGAGGTGGGCCCTCGTCGTCCCGCGGCGGA
TCCCCTGCCCCATATGTGGACACCTTCCTCAACGCCCCAGACATCCTGCCTCGACATTGCACGG
TGCGCGCGGGTCCTGAGCCCCCAGCTATGGTGCGCCCATCCCGGGGCGCCCCGGTCACACACAA
TGGCTGCCTTTTGCTGCGCGAGGCAGAGTTGCATCCCGGAGACCTGCTAGGCCTGGGAGAGCAT
TTCCTGTTCATGTATAAGGACCCCCGCGCCGGGGGCTCTGGTCCCGCTCGGCCACCCTGGCTGC
CTGCGCGCCCCGGGGCCGCGCCACCGGGTCCGGGCTGGGCCTTTTCTTGTCGCCTGTGTGGCCG
TGGCCTGCAGGAGCGCGGCGAGGCACTGGCTGCCTACCTGGACGGCCGCGAGCCGGTGCTGCGC
TTTAGACCACGAGAGGAAGAGGCGCTGTTGGGAGAGATCGTGCGCGCTGCAGCCTCGGGCGCAG
GAGACCTGCCACCACTCGGGCCCGCCACTCTGCTGGCACTGTGTGTGCAGCATTCGGCGAGGGA
GCTAGAGCTGGGCCACCTGCCTCGCTTGCTGGGCCGCCTGGCCCGGCTCATCAAAGAGGCCGTT
TGGGAAAAAATTAAAGAAATTGGAGACCGCCAGCCAGAGAACCACCCAGAGGGAGTTCCTGAGG
TGCCTCTGACCCCAGAGGCTGTGTCTGTGGAGCTGAGACCGCTCATACTGTGGATGGCCAATAC
CACAGAGCTTCTGAGCTTTGTTCAGGAGAAAGTGCTAGAGATGGAGAAAGAGGCTGACCAGGAG
GGCCTGTCCTCCGACCCTCAGCTCTGCAATGATTTGGAATTGTGTGACGAGGCCTTGGCCCTCC
TGGATGAGGTCATCATGTGTACCTTCCAGCAGTCCGTCTACTACCTCACCAAGACTCTCTATTC
GACACTGCCAGCTCTCCTGGACAGTAACCCTTTCACTGCCGGGGCAGAGTTGCCGGGGCCTGGT
GCAGAGCTGGAGGCCATGCCACCTGGACTCAGGCCTACCCTGGGTGTGTTCCAGGCAGCTCTAG
AACTGACCAGTCAGTGTGAGCTGCATCCCGACCTCGTGTCCCAGACTTTTGGCTACTTGTTCTT
CTTCTCCAATGCATCCCTTCTCAACTCGCTGATGGAACGAGGTCAAGGCCGACCTTTCTATCAG
TGGTCTCGAGCCGTCCAAATCAGAACCAACTTGGATCTCGTTTTGGATTGGCTGCAGGGGGCCG
GGCTGGGTGACATTGCCACTGAGTTCTTCCGGAAGCTCTCCATTGCCGTGAACCTGCTGTGTGT
ACCCCGTACCTCCCTGCTCAAGGCTTCATGGAGCAGCTTACGGACTGACTACCCCACCTTGACT
CCTGCTCAACTCCACCATCTCCTCAGCCACTACCAGTTGGGTCCTGGCCGCGGACCACCACCAG
CTTGGGACCCACCACCTGCAGAGCGAGATGCTGTGGACACAGGGGATATCTTTGAAAGTTTTTC
CTCGCATCCTCCTCTCATCCTACCCCTGGGTAGCTCACGCCTGCGCCTCACGGGCCCAGTGACA
GATGATGCATTACACCGAGAACTACGCAGGCTCCGTCGCCTCCTCTGGGATCTTGAGCAGCAGG
AGCTGCCAGCCAATCATCGCCATGGACCGCCGGTGGCTGCGACACCTTGAAAACCAATGACAAA
GAAACGCGCGCAACTTGAAATTGCACCGGTTTTTAAGGGAGCCCGCCTGGGTGTAGAGCATTTT
GGGAGTTGTAGTTTTCCCCGAGCAGACCGCTGAGAGTTTGACTTGTTGGGTTGGTAGATGATCG
GACAATGGGAAGATGGGCTTGGGATGTGAATTCCAAGAAGTAATAAAAGTATCTGTGGTATTGA
C

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099731	(Get FASTA)	NCBI Sequence Viewer
	XP_006229092	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI68876	(Get FASTA)	NCBI Sequence Viewer
	EDM07322	(Get FASTA)	NCBI Sequence Viewer
	EDM07323	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001099731 ⟸ NM_001106261

- UniProtKB:

B5DF05 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAPGAADAQMVPTDPGDFDQLTQCLIQAPSNRPYFLLLQGYQDAQDFVVYVMTREQHVFGRGGP
SSSRGGSPAPYVDTFLNAPDILPRHCTVRAGPEPPAMVRPSRGAPVTHNGCLLLREAELHPGDL
LGLGEHFLFMYKDPRAGGSGPARPPWLPARPGAAPPGPGWAFSCRLCGRGLQERGEALAAYLDG
REPVLRFRPREEEALLGEIVRAAASGAGDLPPLGPATLLALCVQHSARELELGHLPRLLGRLAR
LIKEAVWEKIKEIGDRQPENHPEGVPEVPLTPEAVSVELRPLILWMANTTELLSFVQEKVLEME
KEADQEGLSSDPQLCNDLELCDEALALLDEVIMCTFQQSVYYLTKTLYSTLPALLDSNPFTAGA
ELPGPGAELEAMPPGLRPTLGVFQAALELTSQCELHPDLVSQTFGYLFFFSNASLLNSLMERGQ
GRPFYQWSRAVQIRTNLDLVLDWLQGAGLGDIATEFFRKLSIAVNLLCVPRTSLLKASWSSLRT
DYPTLTPAQLHHLLSHYQLGPGRGPPPAWDPPPAERDAVDTGDIFESFSSHPPLILPLGSSRLR
LTGPVTDDALHRELRRLRRLLWDLEQQELPANHRHGPPVAATP

hide sequence

RefSeq Acc Id:

XP_006229092 ⟸ XM_006229030

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLSGERKEGGSPRFGKLHLPVGLWINSPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPLPPPP
PPHVELRRVGAVKAAGGASGSRAKRISQLFRGSGAGGAGGPGTPGGAQRWASEKKLPELAAGVA
PEPPLPTRAAVPPGVLKIFAAGLASGANYKSVLATERSTARELVAEALERYGLTGGRGAGDSGC
VDAYALCDALGRPAAGVGGGEWRAEHLRVLADAERPLLVQDLWRARPGWARRFELRGREEARRL
EQEAFGAADADGTNAPSWRTQKNRSRAASGGAALASPGPGSGSGTPTGSGGKERSENLSLRRSV
SELSLQGRRRRQQERRQQALSMAPGAADAQMVPTDPGDFDQLTQCLIQAPSNRPYFLLLQGYQD
AQDFVVYVMTREQHVFGRGGPSSSRGGSPAPYVDTFLNAPDILPRHCTVRAGPEPPAMVRPSRG
APVTHNGCLLLREAELHPGDLLGLGEHFLFMYKDPRAGGSGPARPPWLPARPGAAPPGPGWAFS
CRLCGRGLQERGEALAAYLDGREPVLRFRPREEEALLGEIVRAAASGAGDLPPLGPATLLALCV
QHSARELELGHLPRLLGRLARLIKEAVWEKIKEIGDRQPENHPEGVPEVPLTPEAVSVELRPLI
LWMANTTELLSFVQEKVLEMEKEADQEGLSSDPQLCNDLELCDEALALLDEVIMCTFQQSVYYL
TKTLYSTLPALLDSNPFTAGAELPGPGAELEAMPPGLRPTLGVFQAALELTSQCELHPDLVSQT
FGYLFFFSNASLLNSLMERGQGRPFYQWSRAVQIRTNLDLVLDWLQGAGLGDIATEFFRKLSIA
VNLLCVPRTSLLKASWSSLRTDYPTLTPAQLHHLLSHYQLGPGRGPPPAWDPPPAERDAVDTGD
IFESFSSHPPLILPLGSSRLRLTGPVTDDALHRELRRLRRLLWDLEQQELPANHRHGPPVAATP

hide sequence

RefSeq Acc Id:

ENSRNOP00000034336 ⟸ ENSRNOT00000032535

Protein Domains

Dilute

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305291	AgrOrtholog
Ensembl Genes	ENSRNOG00000021004	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000034336	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000032535	ENTREZGENE, UniProtKB/TrEMBL
InterPro	CBD_Rasip1/Radil	UniProtKB/TrEMBL
	Dilute	UniProtKB/TrEMBL
	SMAD_FHA_domain	UniProtKB/TrEMBL
KEGG Report	rno:292912	UniProtKB/TrEMBL
NCBI Gene	292912	ENTREZGENE
Pfam	DIL	UniProtKB/TrEMBL
PhenoGen	Rasip1	PhenoGen
PROSITE	DILUTE	UniProtKB/TrEMBL
SMART	DIL	UniProtKB/TrEMBL
Superfamily-SCOP	SMAD_FHA	UniProtKB/TrEMBL
UniProt	B5DF05	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	F1LN01	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Rasip1	Ras interacting protein 1	Rasip1_predicted	Ras interacting protein 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Rasip1_predicted	Ras interacting protein 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)