Eif3k (eukaryotic translation initiation factor 3, subunit K) - Rat Genome Database

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Gene: Eif3k (eukaryotic translation initiation factor 3, subunit K) Rattus norvegicus
Analyze
Symbol: Eif3k
Name: eukaryotic translation initiation factor 3, subunit K
RGD ID: 1309221
Description: Predicted to enable RNA binding activity and ribosome binding activity. Predicted to contribute to translation initiation factor activity. Predicted to be involved in translational initiation. Predicted to be located in cytosol. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to human EIF3K (eukaryotic translation initiation factor 3 subunit K); PARTICIPATES IN translation initiation pathway; INTERACTS WITH 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Eif3s12; eukaryotic translation initiation factor 3 subunit K; eukaryotic translation initiation factor 3, subunit 12; PLAC-24
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8193,387,628 - 93,397,551 (-)NCBIGRCr8
mRatBN7.2184,260,127 - 84,270,051 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,259,673 - 84,270,302 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx189,669,952 - 89,679,797 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0198,129,768 - 98,139,619 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0191,425,809 - 91,435,654 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0187,927,142 - 87,937,033 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl187,927,141 - 87,937,516 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0189,103,168 - 89,113,069 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,083,646 - 84,088,799 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,161,357 - 84,171,636 (-)NCBI
Celera178,650,207 - 78,655,360 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 57 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif3kRat17alpha-ethynylestradiol affects expressionISOEif3k (Mus musculus)6480464Ethinyl Estradiol affects the expression of EIF3K mRNACTDPMID:17555576
Eif3kRat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in decreased expression of EIF3K mRNACTDPMID:26496021
Eif3kRat17beta-hydroxy-17-methylestra-4,9,11-trien-3-one affects splicingISOEIF3K (Homo sapiens)6480464Metribolone affects the splicing of EIF3K mRNACTDPMID:17010196
Eif3kRat2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOEif3k (Mus musculus)64804642 more ...CTDPMID:30294300
Eif3kRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOEIF3K (Homo sapiens)64804642 more ...CTDPMID:31675489
Eif3kRat2,2',4,4'-Tetrabromodiphenyl ether increases expressionEXP 64804642 more ...CTDPMID:31826744
Eif3kRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOEif3k (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of EIF3K mRNACTDPMID:21570461
Eif3kRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of EIF3K mRNACTDPMID:33387578
Eif3kRat2-amino-14,16-dimethyloctadecan-3-ol decreases expressionISOEIF3K (Homo sapiens)64804642-amino-14 and 16-dimethyloctadecan-3-ol results in decreased expression of EIF3K proteinCTDPMID:32044396
Eif3kRat4,4'-sulfonyldiphenol affects expressionISOEif3k (Mus musculus)6480464bisphenol S affects the expression of EIF3K mRNACTDPMID:39298647
Eif3kRat4,4'-sulfonyldiphenol increases expressionISOEIF3K (Homo sapiens)6480464bisphenol S results in increased expression of EIF3K proteinCTDPMID:34186270
Eif3kRataflatoxin B1 increases methylationISOEIF3K (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of EIF3K geneCTDPMID:28458013
Eif3kRatarsenite(3-) multiple interactionsISOEIF3K (Homo sapiens)6480464arsenite promotes the reaction [G3BP1 protein binds to EIF3K mRNA] and arsenite promotes the reaction [G3BP1 protein binds to EIF3K protein]CTDPMID:32406909
Eif3kRatbenzo[a]pyrene increases expressionISOEif3k (Mus musculus)6480464Benzo(a)pyrene results in increased expression of EIF3K mRNACTDPMID:22228805
Eif3kRatbis(2-ethylhexyl) phthalate increases expressionISOEif3k (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of EIF3K mRNACTDPMID:33754040
Eif3kRatbisphenol A multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in decreased expression of EIF3K mRNACTDPMID:26496021
Eif3kRatbisphenol A increases expressionISOEIF3K (Homo sapiens)6480464bisphenol A results in increased expression of EIF3K proteinCTDPMID:34186270
Eif3kRatbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of EIF3K mRNACTDPMID:32145629 and PMID:33296240
Eif3kRatbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of EIF3K mRNACTDPMID:25181051 and PMID:34947998
Eif3kRatbisphenol AF increases expressionISOEIF3K (Homo sapiens)6480464bisphenol AF results in increased expression of EIF3K proteinCTDPMID:34186270

1 to 20 of 57 rows

Biological Process
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif3kRatbiological_process  ND 159840701/2016: no relevant rat dataRGD 
Eif3kRatcytoplasmic translational initiation involved_inIEAUniRule:UR0001071071600115GO_REF:0000104UniProtGO_REF:0000104
Eif3kRatformation of cytoplasmic translation initiation complex involved_inIEAUniRule:UR0001071071600115GO_REF:0000104UniProtGO_REF:0000104
Eif3kRatregulation of translational initiation involved_inIEAInterPro:IPR0160201600115GO_REF:0000002InterProGO_REF:0000002
Eif3kRattranslation involved_inIEAUniProtKB-KW:KW-06481600115GO_REF:0000043UniProtGO_REF:0000043
Eif3kRattranslational initiation involved_inISOEIF3K (Homo sapiens)1624291 PMID:17581632RGDPMID:17581632
Eif3kRattranslational initiation involved_inIEAUniProtKB:Q9UBQ5 and ensembl:ENSP000002483421600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3kRattranslational initiation involved_inISOEif3k (Mus musculus)1624291 PMID:17581632RGDPMID:17581632
Eif3kRattranslational initiation involved_inIEAUniProtKB-KW:KW-03961600115GO_REF:0000043UniProtGO_REF:0000043
1 to 9 of 9 rows

Cellular Component
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif3kRatcytoplasm located_inIEAInterPro:IPR0093741600115GO_REF:0000002InterProGO_REF:0000002
Eif3kRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Eif3kRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Eif3kRatcytoplasm located_inIEAUniRule:UR0001071071600115GO_REF:0000104UniProtGO_REF:0000104
Eif3kRatcytosol located_inIEAUniProtKB:Q9UBQ5 and ensembl:ENSP000002483421600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3kRatcytosol located_inISOEIF3K (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Eif3kRateukaryotic 43S preinitiation complex part_ofIEAUniRule:UR0001071071600115GO_REF:0000104UniProtGO_REF:0000104
Eif3kRateukaryotic 48S preinitiation complex part_ofIEAUniRule:UR0001071071600115GO_REF:0000104UniProtGO_REF:0000104
Eif3kRateukaryotic translation initiation factor 3 complex part_ofISOEif3k (Mus musculus)1624291 PMID:17581632RGDPMID:17581632
Eif3kRateukaryotic translation initiation factor 3 complex part_ofIEAInterPro:IPR0093741600115GO_REF:0000002InterProGO_REF:0000002
Eif3kRateukaryotic translation initiation factor 3 complex part_ofIBAMGI:1921080 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Eif3kRateukaryotic translation initiation factor 3 complex part_ofIEAUniProtKB:Q9UBQ5 and ensembl:ENSP000002483421600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3kRateukaryotic translation initiation factor 3 complex part_ofIEAUniRule:UR0001071071600115GO_REF:0000104UniProtGO_REF:0000104
Eif3kRateukaryotic translation initiation factor 3 complex part_ofIEAInterPro:IPR009374 and InterPro:IPR0160201600115GO_REF:0000002InterProGO_REF:0000002
Eif3kRateukaryotic translation initiation factor 3 complex part_ofISOEIF3K (Homo sapiens)1624291 PMID:17322308 more ...RGDPMID:17322308 more ...
Eif3kRatnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
Eif3kRatnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
1 to 17 of 17 rows

Molecular Function
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif3kRatprotein binding enablesISOEIF3K (Homo sapiens)1624291UniProtKB:O14645 more ...RGDPMID:16189514 more ...
Eif3kRatribosome binding enablesIEAInterPro:IPR0160201600115GO_REF:0000002InterProGO_REF:0000002
Eif3kRatRNA binding enablesIEAUniRule:UR0001071071600115GO_REF:0000104UniProtGO_REF:0000104
Eif3kRattranslation initiation factor activity contributes_toISOEIF3K (Homo sapiens)1624291 PMID:17581632 and PMID:25849773RGDPMID:17581632 and PMID:25849773
Eif3kRattranslation initiation factor activity enablesIEAInterPro:IPR0093741600115GO_REF:0000002InterProGO_REF:0000002
Eif3kRattranslation initiation factor activity contributes_toIEAUniProtKB:Q9UBQ5 and ensembl:ENSP000002483421600115GO_REF:0000107EnsemblGO_REF:0000107
Eif3kRattranslation initiation factor activity contributes_toIBAMGI:1921080 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Eif3kRattranslation initiation factor activity enablesIEAUniProtKB-KW:KW-03961600115GO_REF:0000043UniProtGO_REF:0000043
Eif3kRattranslation initiation factor activity enablesIEAInterPro:IPR009374 and InterPro:IPR0160201600115GO_REF:0000002InterProGO_REF:0000002
Eif3kRattranslation initiation factor activity enablesIEAUniRule:UR0001071071600115GO_REF:0000104UniProtGO_REF:0000104
Eif3kRattranslation initiation factor activity contributes_toISOEif3k (Mus musculus)1624291 PMID:17581632RGDPMID:17581632
1 to 11 of 11 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Eif3kRattranslation initiation pathway  ISOEIF3K (Homo sapiens)10002776 RGD 

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The scanning mechanism of eukaryotic translation initiation. Hinnebusch AG Annu Rev Biochem. 2014;83:779-812. doi: 10.1146/annurev-biochem-060713-035802. Epub 2014 Jan 29.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
PMID:12006665   PMID:16935469   PMID:17322308   PMID:17581632   PMID:18599441   PMID:19946888   PMID:23376485   PMID:25849773  



Eif3k
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8193,387,628 - 93,397,551 (-)NCBIGRCr8
mRatBN7.2184,260,127 - 84,270,051 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl184,259,673 - 84,270,302 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx189,669,952 - 89,679,797 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0198,129,768 - 98,139,619 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0191,425,809 - 91,435,654 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0187,927,142 - 87,937,033 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl187,927,141 - 87,937,516 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0189,103,168 - 89,113,069 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4184,083,646 - 84,088,799 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1184,161,357 - 84,171,636 (-)NCBI
Celera178,650,207 - 78,655,360 (-)NCBICelera
Cytogenetic Map1q21NCBI
EIF3K
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381938,619,188 - 38,636,954 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1938,619,082 - 38,636,955 (+)EnsemblGRCh38hg38GRCh38
GRCh371939,109,828 - 39,127,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361943,801,562 - 43,819,435 (+)NCBINCBI36Build 36hg18NCBI36
Build 341943,801,576 - 43,819,433NCBI
Celera1935,911,748 - 35,929,621 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1935,556,294 - 35,574,163 (+)NCBIHuRef
CHM1_11939,110,545 - 39,128,418 (+)NCBICHM1_1
T2T-CHM13v2.01941,423,166 - 41,440,932 (+)NCBIT2T-CHM13v2.0
Eif3k
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39728,670,797 - 28,681,322 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl728,670,797 - 28,681,289 (-)EnsemblGRCm39 Ensembl
GRCm38728,971,372 - 28,981,890 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl728,971,372 - 28,981,864 (-)EnsemblGRCm38mm10GRCm38
MGSCv37729,756,392 - 29,766,833 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36728,680,133 - 28,690,574 (-)NCBIMGSCv36mm8
Celera723,532,815 - 23,543,259 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map716.94NCBI
Eif3k
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955468848,406 - 858,239 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955468849,149 - 858,239 (-)NCBIChiLan1.0ChiLan1.0
EIF3K
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22044,911,980 - 44,929,143 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11946,782,164 - 46,799,467 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01935,714,791 - 35,732,049 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11944,286,262 - 44,303,608 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1944,286,262 - 44,303,608 (+)Ensemblpanpan1.1panPan2
EIF3K
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11114,433,373 - 114,443,911 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1114,433,375 - 114,443,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1113,838,008 - 113,848,550 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01115,035,289 - 115,045,857 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1115,035,291 - 115,045,846 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11114,608,270 - 114,618,832 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01114,226,014 - 114,236,551 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01115,264,552 - 115,275,118 (-)NCBIUU_Cfam_GSD_1.0
Eif3k
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934913,150,200 - 13,161,570 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368011,315,509 - 1,330,242 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368011,315,530 - 1,326,926 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF3K
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1647,476,184 - 47,488,933 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2643,027,843 - 43,040,551 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EIF3K
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1633,263,091 - 33,281,170 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl633,263,098 - 33,281,517 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607311,211,361 - 11,229,238 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif3k
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479412,025,591 - 12,035,972 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479412,025,545 - 12,035,893 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Eif3k
49 total Variants

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:100
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000067802
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 38 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat

1 to 10 of 38 rows
RH131932  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2184,259,773 - 84,259,971 (+)MAPPERmRatBN7.2
Rnor_6.0187,926,791 - 87,926,988NCBIRnor6.0
Rnor_5.0189,102,817 - 89,103,014UniSTSRnor5.0
RGSC_v3.4184,083,295 - 84,083,492UniSTSRGSC3.4
Celera178,649,856 - 78,650,053UniSTS
RH 3.4 Map1840.2UniSTS
Cytogenetic Map1q21UniSTS
RH91438  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2184,260,155 - 84,261,631 (+)MAPPERmRatBN7.2
Rnor_6.0187,927,173 - 87,928,648NCBIRnor6.0
Rnor_5.0189,103,199 - 89,104,674UniSTSRnor5.0
RGSC_v3.4184,083,677 - 84,085,152UniSTSRGSC3.4
Celera178,650,238 - 78,651,713UniSTS
Cytogenetic Map1q21UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000067802   ⟹   ENSRNOP00000061066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl184,259,673 - 84,265,154 (-)Ensembl
Rnor_6.0 Ensembl187,927,175 - 87,932,171 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087522   ⟹   ENSRNOP00000068995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl184,260,843 - 84,270,302 (-)Ensembl
Rnor_6.0 Ensembl187,927,141 - 87,937,516 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106519   ⟹   ENSRNOP00000081776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl184,259,676 - 84,269,921 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106874   ⟹   ENSRNOP00000091592
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl184,259,676 - 84,270,302 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112033   ⟹   ENSRNOP00000094716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl184,260,111 - 84,270,000 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118913   ⟹   ENSRNOP00000083732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl184,259,676 - 84,269,983 (-)Ensembl
RefSeq Acc Id: NM_001398703   ⟹   NP_001385632
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,387,628 - 93,397,487 (-)NCBI
mRatBN7.2184,260,127 - 84,269,987 (-)NCBI
RefSeq Acc Id: XM_039104247   ⟹   XP_038960175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,390,882 - 93,397,551 (-)NCBI
mRatBN7.2184,264,503 - 84,270,051 (-)NCBI
RefSeq Acc Id: XM_063283417   ⟹   XP_063139487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8193,387,628 - 93,397,551 (-)NCBI
Ensembl Acc Id: ENSRNOP00000061066   ⟸   ENSRNOT00000067802
Ensembl Acc Id: ENSRNOP00000068995   ⟸   ENSRNOT00000087522
RefSeq Acc Id: XP_038960175   ⟸   XM_039104247
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000083732   ⟸   ENSRNOT00000118913
Ensembl Acc Id: ENSRNOP00000081776   ⟸   ENSRNOT00000106519
PCI

Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JU77-F1-model_v2 AlphaFold A0A0G2JU77 1-215 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 35 of 35 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-60205 BioCyc
Ensembl Genes ENSRNOG00000020495 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067802.3 UniProtKB/TrEMBL
  ENSRNOT00000087522.2 UniProtKB/TrEMBL
  ENSRNOT00000106519.1 UniProtKB/TrEMBL
  ENSRNOT00000106874.1 UniProtKB/TrEMBL
  ENSRNOT00000112033 ENTREZGENE
  ENSRNOT00000112033.1 UniProtKB/TrEMBL
  ENSRNOT00000118913 ENTREZGENE
  ENSRNOT00000118913.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  ARM repeat, domain 1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  CSN8_PSD8_EIF3K UniProtKB/TrEMBL
  PCI_dom UniProtKB/TrEMBL
  Transl_init_fac_sub12_euk UniProtKB/TrEMBL
  Transl_init_fac_sub12_N_euk UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene 292762 ENTREZGENE
PANTHER EIF-3_p25 UniProtKB/TrEMBL
  EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT K UniProtKB/TrEMBL
Pfam CSN8_PSD8_EIF3K UniProtKB/TrEMBL
PhenoGen Eif3k PhenoGen
PROSITE PCI UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020495 RatGTEx
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
UniProt A0A0G2JU77_RAT UniProtKB/TrEMBL
  A0A8I5ZV86_RAT UniProtKB/TrEMBL
  A0A8I5ZX76 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFY5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIB7 ENTREZGENE, UniProtKB/TrEMBL
  A6J9M3 ENTREZGENE, UniProtKB/TrEMBL
  D4A190_RAT UniProtKB/TrEMBL
1 to 35 of 35 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Eif3k  eukaryotic translation initiation factor 3, subunit K  Eif3s12_predicted  eukaryotic translation initiation factor 3, subunit 12 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Eif3s12_predicted  eukaryotic translation initiation factor 3, subunit 12 (predicted)  eIF3k_predicted  eukaryotic translation initiation factor 3 subunit k (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 eIF3k_predicted  eukaryotic translation initiation factor 3 subunit k (predicted)      Symbol and Name status set to approved 70820 APPROVED